Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 6.0e-238 827.0 393 100.0
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 2.2e-211 738.8 397 88.2
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 9.1e-210 733.4 396 87.4
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 3.1e-202 708.4 389 87.1
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 3.1e-202 708.4 389 87.1
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 5.2e-197 691.0 394 83.5
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 1.7e-195 686.0 393 81.9
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 1.1e-191 673.3 393 80.4
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 4.2e-191 671.4 394 81.2
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 5.5e-191 671.0 393 80.2
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 1.2e-190 669.8 393 80.9
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 3.4e-188 661.8 394 79.9
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 1.3e-187 659.8 387 82.4
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 2.3e-184 649.0 396 80.1
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 1.9e-170 602.8 389 73.0
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 9.2e-170 600.5 394 71.3
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 1.7e-168 596.3 387 72.6
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 2.5e-167 592.4 388 70.1
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 7.3e-167 590.9 387 71.8
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 4.7e-166 588.2 389 71.7
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 1.1e-165 587.0 393 70.7
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 6.8e-165 584.3 395 70.6
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 3.4e-164 582.0 420 67.6
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 2.9e-163 578.9 390 69.0
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 1.1e-162 577.0 394 69.3
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 4.1e-162 575.1 388 69.8
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 1.2e-161 573.5 393 68.2
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 1.3e-160 570.1 381 70.9
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 1.2e-158 563.5 389 69.4
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 8.9e-157 557.4 384 68.5
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 1.2e-156 557.0 398 66.6
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 1.2e-156 557.0 390 67.4
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 1.3e-155 553.5 391 67.5
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 2.2e-155 552.7 398 66.3
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 4.1e-154 548.5 392 67.9
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 7.1e-154 547.7 394 66.0
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 7.8e-153 544.3 389 66.6
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 1.3e-152 543.5 396 65.7
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 3.9e-152 542.0 396 65.7
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 2.5e-151 539.3 391 65.0
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 3.3e-151 538.9 398 64.1
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 7.3e-151 537.7 388 66.5
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 1.2e-150 537.0 395 65.8
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 1.2e-150 537.0 392 65.8
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 2.1e-150 536.2 399 65.9
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 2.8e-150 535.8 396 65.2
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 2.4e-149 532.7 395 64.6
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 8.9e-149 530.8 436 59.9
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 1.2e-148 530.4 399 64.9
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.5e-148 530.0 388 66.8
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 2.0e-148 529.6 344 72.4
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 7.6e-148 527.7 395 63.5
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 7.6e-148 527.7 397 65.7
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 1.3e-147 526.9 383 66.1
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 2.9e-147 525.8 394 64.7
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 2.9e-147 525.8 390 64.9
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 4.9e-147 525.0 395 63.8
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.4e-146 523.5 395 65.3
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 1.9e-146 523.1 340 72.9
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 3.2e-146 522.3 381 65.4
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 1.2e-145 520.4 389 64.8
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.2e-145 520.4 398 63.1
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 1.2e-145 520.4 401 62.3
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 1.6e-145 520.0 448 56.9
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 2.1e-145 519.6 400 63.8
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 1.3e-144 516.9 420 62.4
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 2.5e-143 512.7 393 64.1
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 3.3e-143 512.3 379 66.8
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 9.6e-143 510.8 376 64.4
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 1.6e-142 510.0 400 63.0
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.1e-141 507.3 396 62.6
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 1.8e-141 506.5 387 61.2
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.7e-139 500.0 393 64.1
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 2.2e-139 499.6 398 61.1
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 7.1e-138 494.6 396 62.6
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 1.2e-137 493.8 389 60.7
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 3.5e-137 492.3 403 61.0
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 3.5e-137 492.3 398 61.3
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 7.9e-137 491.1 328 69.8
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 3.9e-136 488.8 390 61.0
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 1.1e-135 487.3 398 60.6
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 1.9e-135 486.5 390 60.0
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 1.9e-135 486.5 393 62.3
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 3.3e-135 485.7 389 61.2
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 4.3e-135 485.3 389 59.9
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 9.6e-135 484.2 413 59.1
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 2.9e-131 472.6 394 58.9
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 3.8e-131 472.2 389 59.6
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 3.8e-131 472.2 389 59.9
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 1.1e-130 470.7 393 60.1
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 1.1e-130 470.7 369 60.7
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 1.9e-130 469.9 389 60.2
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 1.9e-130 469.9 392 60.2
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 2.1e-129 466.5 390 60.0
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 1.9e-127 459.9 431 54.8
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 4.3e-127 458.8 373 59.2
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 2.1e-126 456.4 388 58.8
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 2.1e-126 456.4 393 58.3
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.1e-125 454.1 388 58.5
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 1.1e-125 454.1 428 53.5
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 5.3e-125 451.8 391 58.1
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 4.5e-124 448.7 388 58.5
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 2.2e-123 446.4 403 56.6
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 1.9e-122 443.4 386 56.5
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 8.7e-120 434.5 345 62.0
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 7.4e-119 431.4 234 88.5
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 7.2e-114 414.8 306 62.7
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 3.9e-104 382.5 277 69.3
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 8.8e-104 381.3 262 70.2
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 4.0e-88 329.3 388 43.8
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 2.2e-86 323.6 391 43.5
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 1.1e-85 321.2 392 42.6
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 1.8e-85 320.5 282 57.4
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 2.4e-85 320.1 353 46.5
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 2.7e-76 290.0 204 67.2
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 3.8e-75 286.2 301 45.5
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 5.0e-75 285.8 229 59.0
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 7.8e-68 261.9 315 46.3
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 7.5e-63 245.4 204 56.4
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 3.5e-60 236.5 173 68.2
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 3.3e-58 229.9 234 47.4
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 2.0e-55 220.7 156 63.5
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 2.7e-52 210.3 363 36.1
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 1.2e-49 201.4 189 54.0
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 2.5e-42 177.2 133 67.7
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 4.4e-39 166.4 122 66.4
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 4.6e-36 156.4 334 32.0
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 1.7e-35 154.5 349 31.8
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 1.1e-26 125.2 149 42.3
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 8.1e-25 119.0 178 39.3
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-17 94.0 148 40.5
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 9.9e-15 85.5 65 64.6
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-12 77.0 69 47.8
Prupe.8G259600 Prunus persica HOM05D005667 ORTHO05D007299 2.1e-09 67.8 38 78.9
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 8.2e-09 65.9 78 51.3
AagrBONN_evm.TU.Sc2ySwM_228.5273 Anthoceros agrestis HOM05D004669 ORTHO05D005767 3.4e-07 60.5 156 29.5
RcHm_v2.0_Chr2g0136751 Rosa chinensis HOM05D004669 ORTHO05D005767 7.6e-07 59.3 284 23.2
FAN02G3057 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.3e-06 58.5 262 23.7
FAN05G0230 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.7e-06 58.2 262 23.7
MCO13G313 Micromonas commoda HOM05D004669 ORTHO05D005767 1.7e-06 58.2 145 27.6
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.7e-06 58.2 189 25.4
FvH4_6g30400 Fragaria vesca HOM05D004669 ORTHO05D005767 2.2e-06 57.8 262 23.3
Hma1.2p1_0531F.1_g173340 Hydrangea macrophylla HOM05D000684 ORTHO05D000688 2.2e-06 57.8 151 29.1
FvH4_3g19920 Fragaria vesca HOM05D000684 ORTHO05D000688 3.8e-06 57.0 150 27.3
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 4.9e-06 56.6 172 27.3
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 4.9e-06 56.6 172 27.3
Thhalv10006752m.g Eutrema salsugineum HOM05D004669 ORTHO05D005767 4.9e-06 56.6 172 26.7
Cre06.g278176 Chlamydomonas reinhardtii HOM05D003769 ORTHO05D034408 6.5e-06 56.2 126 31.0
AL1G27560 Arabidopsis lyrata HOM05D004669 ORTHO05D005767 8.4e-06 55.8 172 26.7
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 8.4e-06 55.8 172 26.7
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 8.4e-06 55.8 172 26.7
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 8.4e-06 55.8 172 26.7
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 8.4e-06 55.8 172 26.7
CARHR016000 Cardamine hirsuta HOM05D004669 ORTHO05D005767 8.4e-06 55.8 172 26.7
FAN14G3011 Fragaria x ananassa HOM05D004669 ORTHO05D005767 8.4e-06 55.8 202 24.3
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 8.4e-06 55.8 172 23.3


User provided reference genes

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