Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 5.3e-254 880.6 452 100.0
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 3.1e-238 828.2 452 92.3
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 1.4e-235 819.3 452 92.0
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 2.0e-232 808.9 452 91.4
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 4.4e-224 781.2 452 87.2
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 1.1e-222 776.5 452 87.2
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 4.2e-219 764.6 455 86.6
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 1.6e-218 762.7 453 86.3
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 1.2e-216 756.5 455 85.9
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 7.7e-213 743.8 451 83.4
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 3.6e-186 655.2 453 74.8
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 3.4e-184 648.7 403 83.4
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 3.0e-180 635.6 436 73.4
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 1.5e-176 623.2 442 71.7
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 3.4e-176 622.1 440 72.5
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 7.6e-176 620.9 418 73.9
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 4.9e-175 618.2 437 71.4
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 3.2e-174 615.5 440 72.3
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 1.2e-173 613.6 442 69.7
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 1.6e-173 613.2 442 70.8
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 2.1e-173 612.8 417 73.6
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.1e-173 612.8 435 72.6
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 2.7e-173 612.5 438 71.5
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 3.5e-173 612.1 439 70.8
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 3.5e-173 612.1 427 72.8
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 3.5e-173 612.1 407 74.7
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 6.0e-173 611.3 418 74.2
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 1.7e-172 609.8 436 70.9
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 5.1e-172 608.2 436 71.6
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 5.1e-172 608.2 439 71.5
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 8.7e-172 607.4 436 70.4
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 1.1e-171 607.1 442 69.9
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.1e-171 607.1 438 71.9
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 3.6e-170 602.1 430 70.9
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 4.7e-170 601.7 446 70.2
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 1.1e-169 600.5 418 73.2
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.8e-169 599.7 415 73.5
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 9.0e-169 597.4 417 71.9
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 1.2e-168 597.0 437 71.4
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 2.0e-168 596.3 427 70.0
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 3.4e-168 595.5 441 68.9
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 9.9e-168 594.0 454 67.0
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 1.3e-167 593.6 408 73.0
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 4.9e-167 591.7 432 69.7
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 8.4e-167 590.9 418 71.3
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 2.4e-166 589.3 439 67.9
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 4.2e-166 588.6 438 70.5
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 7.1e-166 587.8 419 69.9
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 9.3e-166 587.4 404 74.0
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 2.1e-165 586.3 420 70.5
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 2.7e-165 585.9 417 71.2
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 3.5e-165 585.5 417 69.5
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 7.8e-165 584.3 441 68.3
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 1.0e-164 583.9 428 68.0
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 2.3e-164 582.8 410 70.0
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 6.6e-164 581.3 439 68.3
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 8.7e-164 580.9 419 71.1
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 8.7e-164 580.9 426 69.7
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.5e-163 580.1 419 70.9
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 1.9e-163 579.7 390 72.8
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 1.9e-163 579.7 410 70.0
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.5e-163 579.3 419 71.1
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 4.3e-163 578.6 415 70.4
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 5.6e-163 578.2 409 71.6
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 1.6e-162 576.6 419 69.0
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 2.1e-162 576.2 412 71.4
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 1.1e-161 573.9 430 70.2
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 1.5e-160 570.1 431 68.0
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 1.5e-160 570.1 414 69.8
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.0e-160 569.7 416 70.2
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 1.7e-159 566.6 412 69.9
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 2.9e-159 565.8 424 67.7
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 4.9e-159 565.1 403 72.7
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 8.4e-159 564.3 430 67.4
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 2.7e-157 559.3 450 64.0
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 5.1e-156 555.1 409 68.7
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 6.7e-156 554.7 393 71.0
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 8.7e-156 554.3 453 64.7
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 4.8e-154 548.5 476 60.7
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 6.9e-153 544.7 413 68.0
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 9.0e-153 544.3 525 58.1
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 8.4e-151 537.7 440 64.1
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 2.4e-150 536.2 389 68.4
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 5.5e-150 535.0 413 66.3
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.2e-149 533.9 419 64.9
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 4.6e-149 531.9 398 68.6
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 1.6e-146 523.5 446 64.1
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 1.6e-146 523.5 446 64.1
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 4.2e-142 508.8 391 68.3
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 7.9e-141 504.6 370 71.6
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 1.0e-140 504.2 417 62.4
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.7e-135 486.9 371 70.1
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 9.4e-134 481.1 419 59.4
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 1.6e-133 480.3 328 74.1
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 1.4e-132 477.2 405 62.0
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 5.0e-127 458.8 415 60.5
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 2.3e-124 449.9 396 58.1
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 5.7e-123 445.3 328 69.8
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 7.7e-112 408.3 409 55.7
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 2.2e-111 406.8 322 66.8
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 4.8e-106 389.0 404 58.7
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 4.8e-106 389.0 304 64.1
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.2e-104 384.4 408 53.7
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.7e-96 356.7 253 72.7
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 7.7e-96 355.1 337 59.9
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 1.2e-91 341.3 394 48.2
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.2e-81 306.6 227 73.1
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 8.6e-79 298.5 223 70.4
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 7.3e-78 295.4 391 45.0
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 2.1e-77 293.9 221 65.6
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 7.8e-64 248.8 392 40.1
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 9.9e-51 205.3 127 78.7
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 3.3e-46 190.3 120 76.7
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.4e-43 180.3 111 78.4
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 2.2e-42 177.6 112 76.8
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 8.4e-42 175.6 111 76.6
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.6e-40 171.4 111 74.8
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.9e-33 147.9 104 76.0
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 1.9e-33 147.9 124 59.7
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 5.7e-30 136.3 88 72.7
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 9.6e-30 135.6 105 65.7
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.7e-24 117.5 93 61.3
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 2.8e-21 107.5 87 63.2
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 3.7e-21 107.1 67 68.7
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 1.8e-20 104.8 78 60.3
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 6.9e-20 102.8 91 58.2
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 3.8e-18 97.1 105 53.3
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 3.6e-16 90.5 107 51.4
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 3.6e-16 90.5 49 79.6
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 7.4e-14 82.8 143 44.1
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 4.1e-12 77.0 43 76.7
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 6.9e-12 76.3 51 70.6
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 2.9e-10 70.9 41 78.0


User provided reference genes

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