Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 3.6e-129 464.9 235 100.0
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 2.8e-121 438.7 233 94.0
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 3.6e-121 438.3 233 94.0
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 5.8e-119 431.0 232 94.0
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 2.2e-118 429.1 235 90.2
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 4.4e-111 404.8 232 87.1
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.9e-109 399.4 232 85.8
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-108 396.7 230 85.2
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.1e-106 390.2 234 82.1
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 1.5e-106 389.8 235 82.1
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.9e-106 389.4 229 82.5
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 2.5e-106 389.0 233 82.0
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 1.4e-104 383.3 230 82.2
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 4.3e-98 361.7 231 77.1
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 2.2e-94 349.4 227 74.4
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 2.2e-94 349.4 228 75.0
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 3.8e-94 348.6 232 73.7
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 6.4e-94 347.8 228 74.1
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 6.4e-94 347.8 233 70.8
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 8.4e-94 347.4 227 74.0
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 8.4e-94 347.4 224 75.9
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 8.4e-94 347.4 233 71.2
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.1e-93 347.1 227 73.6
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.9e-93 346.3 233 73.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 3.2e-93 345.5 233 70.8
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 7.1e-93 344.4 233 72.5
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 9.3e-93 344.0 228 74.1
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 9.3e-93 344.0 224 75.0
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.2e-92 343.6 227 73.1
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.2e-92 343.6 227 70.9
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 3.5e-92 342.0 232 72.8
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.0e-91 340.5 227 70.9
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.3e-91 340.1 224 73.7
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.7e-91 339.7 227 72.7
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.9e-91 338.6 233 70.0
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 3.9e-91 338.6 227 71.4
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.1e-91 338.2 231 71.0
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 8.7e-91 337.4 224 72.8
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 8.7e-91 337.4 233 69.1
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.9e-90 336.3 224 71.9
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 2.5e-90 335.9 233 75.5
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.5e-90 335.9 227 70.0
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 2.5e-90 335.9 227 70.0
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.5e-90 335.9 228 70.6
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.5e-90 335.9 228 71.1
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 5.6e-90 334.7 228 71.5
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 5.6e-90 334.7 228 71.5
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 7.4e-90 334.3 227 69.2
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 7.4e-90 334.3 218 74.8
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 9.6e-90 334.0 225 71.1
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 9.6e-90 334.0 231 68.4
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 9.6e-90 334.0 232 69.0
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-89 332.8 233 69.1
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 2.1e-89 332.8 232 69.4
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 2.8e-89 332.4 231 69.3
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 2.8e-89 332.4 227 70.9
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 3.6e-89 332.0 225 72.4
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 4.8e-89 331.6 222 73.4
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 8.1e-89 330.9 227 71.4
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.1e-88 330.5 227 70.5
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.1e-88 330.5 233 68.2
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 1.8e-88 329.7 232 69.8
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.4e-88 329.3 225 70.7
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 2.4e-88 329.3 228 70.2
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 3.1e-88 328.9 209 77.0
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 4.0e-88 328.6 228 70.2
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 4.0e-88 328.6 225 70.2
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 9.0e-88 327.4 233 69.1
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.2e-87 327.0 227 69.6
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.5e-87 326.6 218 73.4
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.5e-87 326.6 233 67.8
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.0e-87 326.2 224 71.4
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 2.6e-87 325.9 232 68.1
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 2.6e-87 325.9 223 72.6
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 2.6e-87 325.9 233 70.8
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 4.5e-87 325.1 225 70.2
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 4.5e-87 325.1 223 70.4
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 7.6e-87 324.3 227 69.2
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 9.9e-87 323.9 230 67.4
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.3e-86 323.6 225 69.8
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 1.7e-86 323.2 223 70.4
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.7e-86 323.2 223 72.2
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 2.9e-86 322.4 225 69.8
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 2.9e-86 322.4 228 68.9
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 3.8e-86 322.0 225 69.3
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 4.9e-86 321.6 225 69.8
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 4.9e-86 321.6 225 68.9
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 4.9e-86 321.6 228 68.4
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 6.4e-86 321.2 225 69.8
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 8.4e-86 320.9 227 67.8
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 8.4e-86 320.9 224 67.4
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.9e-85 319.7 231 68.0
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.9e-85 319.7 225 68.4
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 3.2e-85 318.9 227 70.0
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 3.2e-85 318.9 225 68.9
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 3.2e-85 318.9 224 70.5
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 4.2e-85 318.5 233 70.0
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 5.5e-85 318.2 228 69.3
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.2e-84 317.0 218 72.0
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 2.7e-84 315.8 271 61.3
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.0e-83 313.9 235 68.1
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.0e-83 313.9 229 67.2
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.3e-83 313.5 223 68.6
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.8e-83 313.2 229 67.2
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.0e-83 312.4 235 68.1
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.0e-83 312.4 229 67.2
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 3.9e-83 312.0 228 68.0
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.7e-83 311.2 201 74.1
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.5e-82 310.1 227 65.2
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.5e-82 310.1 227 68.3
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.9e-82 309.7 210 70.5
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 5.6e-82 308.1 224 66.1
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 1.2e-79 300.4 227 63.0
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.5e-79 300.1 204 72.1
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 4.5e-79 298.5 195 75.9
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.8e-79 298.1 232 63.4
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.7e-78 296.6 313 50.2
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 6.5e-78 294.7 225 65.3
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 8.4e-78 294.3 224 64.7
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.5e-77 292.7 227 63.4
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 3.2e-77 292.4 221 64.7
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 7.1e-77 291.2 235 60.4
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.8e-75 286.6 227 63.0
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 6.9e-72 274.6 204 62.7
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.3e-70 270.4 188 70.7
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 5.0e-70 268.5 221 61.1
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.5e-66 256.1 235 58.3
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 6.3e-65 251.5 195 63.1
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.2e-63 247.3 175 68.0
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-62 243.8 154 76.0
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 5.0e-62 241.9 182 67.0
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 3.2e-61 239.2 224 55.4
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.0e-59 234.2 216 54.2
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.3e-57 227.3 211 59.7
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.7e-57 225.7 144 75.7
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.4e-56 223.0 133 80.5
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 9.1e-56 221.1 230 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 2.0e-55 219.9 219 50.7
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.6e-52 210.3 124 80.6
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.2e-47 194.1 169 60.4
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 2.0e-47 193.4 147 68.7
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 1.2e-44 184.1 142 66.2
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 4.7e-44 182.2 139 61.9
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 6.1e-44 181.8 144 63.9
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 1.1e-42 177.6 134 64.2
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 2.6e-42 176.4 142 60.6
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 4.8e-41 172.2 133 63.9
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 4.1e-40 169.1 202 46.0
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 4.1e-40 169.1 119 65.5
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 2.0e-39 166.8 134 63.4
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 3.2e-37 159.5 151 60.3
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 7.2e-37 158.3 184 44.0
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 3.0e-35 152.9 126 61.9
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.2e-34 151.0 191 45.5
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 2.8e-33 146.4 106 66.0
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.1e-32 144.4 97 73.2
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.4e-32 144.1 91 75.8
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 3.1e-32 142.9 85 80.0
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 2.7e-31 139.8 109 67.0
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 2.9e-30 136.3 102 69.6
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.8e-27 127.1 85 74.1
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 6.8e-27 125.2 91 70.3
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.5e-26 124.0 81 77.8
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 2.6e-26 123.2 77 79.2
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.6e-26 123.2 85 67.1
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 8.3e-25 118.2 95 66.3
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.1e-24 115.9 85 68.2
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 9.2e-24 114.8 85 68.2
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 2.0e-23 113.6 76 71.1
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 2.3e-22 110.2 71 71.8
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 1.6e-20 104.0 95 56.8
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-20 104.0 121 48.8
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.7e-17 94.0 63 71.4
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 3.2e-16 89.7 61 68.9
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 3.5e-15 86.3 182 30.8
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 5.9e-15 85.5 90 45.6
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 1.3e-14 84.3 63 68.3
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.3e-13 79.3 64 64.1
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 2.1e-12 77.0 185 31.4
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 5.2e-11 72.4 49 69.4
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 3.4e-10 69.7 60 55.0
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 7.5e-10 68.6 185 28.1
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 2.2e-09 67.0 67 49.3


User provided reference genes

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