Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 9.7e-56 219.9 113 100.0
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.8e-33 146.0 116 72.4
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 3.7e-31 138.3 115 70.4
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 7.0e-30 134.0 115 68.7
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 7.0e-30 134.0 115 68.7
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 3.8e-28 128.3 116 66.4
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 8.6e-28 127.1 118 64.4
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 2.5e-27 125.6 116 66.4
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 9.5e-27 123.6 111 65.8
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.1e-26 122.5 129 58.9
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 6.1e-26 120.9 117 62.4
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 3.0e-25 118.6 136 55.1
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 4.0e-25 118.2 116 65.5
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 5.2e-25 117.9 115 60.0
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 3.4e-24 115.2 99 67.7
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 9.8e-24 113.6 117 57.3
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 3.7e-23 111.7 99 64.6
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 3.7e-23 111.7 99 64.6
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 6.4e-23 110.9 115 58.3
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 8.3e-23 110.5 104 62.5
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.1e-22 110.2 113 57.5
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.1e-22 110.2 136 50.7
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 1.8e-22 109.4 115 58.3
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 5.4e-22 107.8 104 60.6
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 9.2e-22 107.1 114 56.1
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 2.0e-21 105.9 152 49.3
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.7e-21 105.5 113 55.8
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 3.5e-21 105.1 99 63.6
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 4.6e-21 104.8 114 57.0
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 7.8e-21 104.0 99 64.6
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 7.8e-21 104.0 98 65.3
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 1.7e-20 102.8 116 55.2
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 5.0e-20 101.3 100 62.0
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 5.0e-20 101.3 106 54.7
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.1e-19 100.1 113 54.0
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.5e-19 99.8 113 53.1
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 3.3e-19 98.6 114 52.6
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 5.6e-19 97.8 103 60.2
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 5.6e-19 97.8 101 56.4
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.2e-18 96.7 114 52.6
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 1.6e-18 96.3 113 56.6
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 1.6e-18 96.3 108 52.8
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 1.1e-17 93.6 110 56.4
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 2.3e-17 92.4 176 40.3
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 3.1e-17 92.0 112 49.1
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 4.0e-17 91.7 121 51.2
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 6.8e-17 90.9 111 48.6
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.8e-17 90.9 115 49.6
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.8e-17 90.9 115 49.6
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 1.2e-16 90.1 114 50.0
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 1.5e-16 89.7 136 45.6
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.5e-16 89.7 115 48.7
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 3.4e-16 88.6 98 57.1
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 9.8e-16 87.0 65 73.8
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 1.3e-15 86.7 99 56.6
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 1.3e-15 86.7 113 47.8
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 1.7e-15 86.3 46 93.5
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 2.2e-15 85.9 104 50.0
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 2.2e-15 85.9 109 47.7
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 2.2e-15 85.9 45 93.3
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.9e-15 85.5 115 47.0
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.7e-15 85.1 95 52.6
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 6.4e-15 84.3 49 85.7
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 6.4e-15 84.3 58 74.1
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 1.4e-14 83.2 129 48.1
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 3.2e-14 82.0 115 46.1
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 3.2e-14 82.0 124 48.4
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 4.1e-14 81.6 55 80.0
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 5.4e-14 81.3 115 48.7
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 5.4e-14 81.3 108 48.1
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 5.4e-14 81.3 106 50.0
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 9.2e-14 80.5 63 68.3
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 1.2e-13 80.1 115 44.3
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 1.6e-13 79.7 52 73.1
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.6e-13 79.7 45 86.7
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 2.0e-13 79.3 169 37.9
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.0e-13 79.3 117 46.2
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 2.7e-13 79.0 108 46.3
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 2.7e-13 79.0 115 47.0
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 3.5e-13 78.6 115 45.2
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 4.6e-13 78.2 114 50.0
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.6e-13 78.2 115 44.3
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 4.6e-13 78.2 55 76.4
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 4.6e-13 78.2 108 47.2
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 6.0e-13 77.8 44 86.4
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 7.8e-13 77.4 115 45.2
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 7.8e-13 77.4 41 92.7
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 7.8e-13 77.4 44 86.4
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 1.0e-12 77.0 114 47.4
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.0e-12 77.0 115 44.3
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.3e-12 76.6 152 42.1
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.7e-12 76.3 115 44.3
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.7e-12 76.3 45 84.4
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.7e-12 76.3 45 84.4
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.7e-12 76.3 45 84.4
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.3e-12 75.9 50 80.0
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 3.0e-12 75.5 107 54.2
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.0e-12 75.5 44 86.4
Glyma.03G213100 Glycine max HOM05D003821 ORTHO05D004449 3.9e-12 75.1 61 70.5
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 8.6e-12 73.9 49 79.6
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 8.6e-12 73.9 114 44.7
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.5e-11 73.2 45 82.2
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.5e-11 73.2 115 45.2
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.5e-11 73.2 110 45.5
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 1.5e-11 73.2 111 48.6
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 1.9e-11 72.8 99 50.5
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 1.9e-11 72.8 99 49.5
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 3.3e-11 72.0 44 81.8
Medtr7g108610 Medicago truncatula HOM05D003821 ORTHO05D004449 3.3e-11 72.0 56 76.8
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 3.3e-11 72.0 45 84.4
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 4.3e-11 71.6 99 47.5
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 4.3e-11 71.6 115 43.5
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 5.6e-11 71.2 98 45.9
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 7.3e-11 70.9 134 44.0
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 7.3e-11 70.9 47 76.6
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 9.5e-11 70.5 46 76.1
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.2e-10 70.1 49 77.6
Hund20554 Selenicereus undatus HOM05D003821 ORTHO05D004449 1.2e-10 70.1 105 46.7
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 1.6e-10 69.7 131 42.7
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 3.6e-10 68.6 107 43.0
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 4.7e-10 68.2 109 45.0
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 6.2e-10 67.8 114 45.6
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 1.1e-09 67.0 116 42.2
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 1.1e-09 67.0 41 78.0
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 1.4e-09 66.6 100 45.0
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.4e-09 66.6 112 42.0
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 2.3e-09 65.9 115 44.3
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.0e-09 65.1 45 77.8
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 6.8e-09 64.3 115 47.8
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 1.2e-08 63.5 113 39.8
Gohir.A10G164000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.5e-08 63.2 82 47.6
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 2.0e-08 62.8 31 96.8
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 2.6e-08 62.4 78 48.7
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 2.6e-08 62.4 34 88.2
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 3.4e-08 62.0 40 77.5
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 3.4e-08 62.0 115 41.7
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.4e-08 61.6 89 43.8
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 5.8e-08 61.2 115 40.0
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 5.8e-08 61.2 31 93.5
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 9.9e-08 60.5 117 41.0
Mapoly0039s0070 Marchantia polymorpha HOM05D003821 ORTHO05D004449 1.3e-07 60.1 100 41.0
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.2e-07 59.3 111 40.5
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 2.2e-07 59.3 30 93.3
VMungo0251G2956 Vigna mungo HOM05D000069 ORTHO05D022756 2.9e-07 58.9 49 67.3
PSO832G3070 Papaver somniferum HOM05D003821 ORTHO05D004449 3.7e-07 58.5 112 37.5
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 6.4e-07 57.8 116 42.2
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 6.4e-07 57.8 114 37.7
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 6.4e-07 57.8 31 90.3
Aa31LG8G3720 Aethionema arabicum HOM05D003821 ORTHO05D004449 8.3e-07 57.4 113 38.9
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 8.3e-07 57.4 103 38.8
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 1.1e-06 57.0 113 38.9
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.1e-06 57.0 31 87.1
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 1.4e-06 56.6 31 87.1
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.4e-06 56.6 30 90.0
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 1.9e-06 56.2 31 87.1
MELO3C032813.2 Cucumis melo HOM05D003821 ORTHO05D004449 2.4e-06 55.8 55 56.4
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 2.4e-06 55.8 114 38.6
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 2.4e-06 55.8 116 38.8
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 3.2e-06 55.5 32 81.2
Thhalv10027508m.g Eutrema salsugineum HOM05D003821 ORTHO05D004449 3.2e-06 55.5 52 61.5
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.2e-06 55.5 30 86.7
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 7.1e-06 54.3 108 36.1
Hma1.2p1_0209F.1_g088610 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 7.1e-06 54.3 113 40.7
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 7.1e-06 54.3 31 80.6
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 9.2e-06 53.9 27 96.3
Pp3c16_4400 Physcomitrium patens HOM05D003821 ORTHO05D004449 9.2e-06 53.9 39 74.4


User provided reference genes

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