Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 6.3e-123 444.1 223 100.0
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 2.8e-75 285.8 185 77.3
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 2.8e-75 285.8 185 77.3
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 2.9e-67 259.2 179 74.9
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 7.0e-66 254.6 177 72.9
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 1.2e-57 227.3 184 67.9
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 2.0e-57 226.5 174 68.4
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 2.8e-54 216.1 182 67.6
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 4.7e-54 215.3 204 60.3
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 1.2e-44 184.1 178 55.6
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 1.3e-43 180.6 179 54.2
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 3.8e-43 179.1 181 56.4
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 3.8e-43 179.1 185 53.5
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 1.4e-42 177.2 180 55.6
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 2.4e-42 176.4 153 59.5
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 2.4e-42 176.4 181 55.8
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 2.4e-42 176.4 181 55.8
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 1.3e-40 170.6 177 52.5
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 2.3e-40 169.9 176 52.3
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 2.3e-40 169.9 179 55.3
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 3.9e-40 169.1 177 51.4
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 4.3e-39 165.6 176 52.3
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 7.3e-39 164.9 191 50.3
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 9.6e-39 164.5 163 54.6
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 9.6e-39 164.5 115 67.8
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 1.6e-38 163.7 176 48.9
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 3.6e-38 162.5 103 72.8
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.6e-38 162.5 103 72.8
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 4.7e-38 162.2 157 56.1
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 8.1e-38 161.4 103 71.8
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 1.1e-37 161.0 176 51.1
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 1.4e-37 160.6 159 55.3
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 2.4e-37 159.8 171 50.9
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 4.0e-37 159.1 103 70.9
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 5.2e-37 158.7 189 48.7
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 2.6e-36 156.4 171 50.3
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 2.6e-36 156.4 176 48.3
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 3.4e-36 156.0 187 50.3
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 4.4e-36 155.6 170 50.0
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 4.4e-36 155.6 128 58.6
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 9.9e-36 154.5 170 54.1
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 2.2e-35 153.3 103 68.9
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 2.9e-35 152.9 165 52.7
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 3.2e-34 149.4 154 46.8
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 9.3e-34 147.9 183 45.9
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 1.6e-33 147.1 151 52.3
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 2.1e-33 146.7 115 60.0
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 2.7e-33 146.4 103 67.0
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 4.6e-33 145.6 180 46.1
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.0e-32 144.4 164 50.0
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 1.0e-32 144.4 117 61.5
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 1.0e-32 144.4 103 66.0
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 1.7e-32 143.7 174 46.6
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.7e-32 143.7 115 60.0
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 3.0e-32 142.9 110 65.5
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 5.1e-32 142.1 128 55.5
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 8.7e-32 141.4 84 78.6
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 8.7e-32 141.4 90 72.2
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 2.5e-31 139.8 115 58.3
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 3.3e-31 139.4 92 68.5
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 4.3e-31 139.0 153 49.0
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 5.6e-31 138.7 149 45.0
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 7.3e-31 138.3 90 68.9
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 7.3e-31 138.3 161 46.0
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 1.3e-30 137.5 103 59.2
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 1.3e-30 137.5 103 59.2
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 2.1e-30 136.7 173 46.8
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 2.1e-30 136.7 103 62.1
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 2.8e-30 136.3 167 46.1
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 3.6e-30 136.0 103 62.1
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 1.1e-29 134.4 133 51.9
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 1.1e-29 134.4 167 44.3
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 1.1e-29 134.4 99 60.6
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 1.1e-29 134.4 99 60.6
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 1.1e-29 134.4 104 59.6
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 2.4e-29 133.3 149 47.7
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 2.4e-29 133.3 149 47.7
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 5.3e-29 132.1 104 58.7
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 6.9e-29 131.7 118 55.1
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 9.0e-29 131.3 102 59.8
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 3.4e-28 129.4 101 60.4
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 4.5e-28 129.0 155 46.5
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 2.2e-27 126.7 100 59.0
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 3.8e-27 125.9 109 55.0
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 4.9e-27 125.6 171 43.9
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 8.4e-27 124.8 113 54.9
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 1.1e-26 124.4 93 60.2
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 2.4e-26 123.2 92 66.3
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 3.5e-25 119.4 178 43.3
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 4.6e-25 119.0 102 51.0
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 4.6e-25 119.0 158 44.3
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 7.9e-25 118.2 177 44.1
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 1.3e-24 117.5 147 44.2
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 1.3e-24 117.5 158 43.7
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 1.3e-24 117.5 158 43.7
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 3.3e-23 112.8 129 47.3
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 7.4e-23 111.7 111 49.5
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 2.4e-21 106.7 131 46.6
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 5.3e-21 105.5 158 43.7
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 4.2e-18 95.9 177 37.9
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 2.1e-17 93.6 92 53.3
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 3.3e-15 86.3 104 47.1
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 9.6e-15 84.7 64 59.4
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 3.7e-14 82.8 252 31.3
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 3.4e-12 76.3 58 60.3
VMungo0540G0573 Vigna mungo HOM05D007263 ORTHO05D009187 5.8e-12 75.5 101 50.5
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.3e-11 74.3 102 40.2
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 1.9e-10 70.5 87 40.2
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 7.1e-10 68.6 87 41.4
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 1.3e-06 57.8 90 36.7


User provided reference genes

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