Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9575 Trifolium pratense HOM05D003216 ORTHO05D009933 0.0e+00 1078.9 510 100.0
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 3.4e-164 582.4 713 47.7
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 1.4e-133 480.7 673 43.1
TPR.G25329 Trifolium pratense HOM05D009380 ORTHO05D009933 2.9e-107 393.3 416 47.8
TPR.G38560 Trifolium pratense HOM05D009380 ORTHO05D009933 2.0e-92 344.0 253 66.8
TPR.G31202 Trifolium pratense HOM05D009380 ORTHO05D009933 3.6e-81 306.6 508 39.6
TPR.G28022 Trifolium pratense HOM05D003216 ORTHO05D002268 9.4e-74 282.0 171 80.7
TPR.G22718 Trifolium pratense HOM05D003216 ORTHO05D002268 5.7e-71 272.7 171 78.9
TPR.G1696 Trifolium pratense HOM05D009380 ORTHO05D009933 5.3e-69 266.2 410 36.8
TPR.G35306 Trifolium pratense HOM05D003216 ORTHO05D002268 1.6e-68 264.6 188 67.0
TPR.G14425 Trifolium pratense HOM05D003216 ORTHO05D002268 1.7e-67 261.2 220 60.5
TPR.G36380 Trifolium pratense HOM05D003216 ORTHO05D002268 6.8e-56 222.6 188 56.9
TPR.G8192 Trifolium pratense HOM05D003216 ORTHO05D002268 8.3e-54 215.7 159 63.5
TPR.G20309 Trifolium pratense HOM05D003216 ORTHO05D002268 3.3e-50 203.8 134 73.1
TPR.G31505 Trifolium pratense HOM05D003216 ORTHO05D002268 2.1e-49 201.1 157 61.8
TPR.G38871 Trifolium pratense HOM05D003216 ORTHO05D002268 2.2e-46 191.0 123 75.6
TPR.G22805 Trifolium pratense HOM05D003216 ORTHO05D002268 5.4e-45 186.4 107 80.4
TPR.G28459 Trifolium pratense HOM05D003216 ORTHO05D002268 9.5e-42 175.6 195 45.6
Medtr8g446690 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-37 162.2 180 48.3
TPR.G14065 Trifolium pratense HOM05D003216 ORTHO05D002268 6.6e-35 152.9 194 42.8
TPR.G17160 Trifolium pratense HOM05D003216 ORTHO05D002268 8.6e-35 152.5 194 42.3
TPR.G21729 Trifolium pratense HOM05D003813 ORTHO05D004557 5.6e-34 149.8 96 59.4
TPR.G30425 Trifolium pratense HOM05D003216 ORTHO05D002268 1.2e-33 148.7 110 65.5
TPR.G8656 Trifolium pratense HOM05D003216 ORTHO05D002268 2.1e-33 147.9 169 43.2
Medtr2g461120 Medicago truncatula HOM05D003216 ORTHO05D002268 5.2e-32 143.3 156 44.9
TPR.G17604 Trifolium pratense HOM05D003216 ORTHO05D002268 2.6e-31 141.0 110 61.8
Medtr1g051465 Medicago truncatula HOM05D003216 ORTHO05D002268 2.2e-30 137.9 185 41.6
TPR.G20359 Trifolium pratense HOM05D003216 ORTHO05D002268 4.9e-30 136.7 152 46.7
Medtr1g035110 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-29 135.6 179 38.5
Medtr7g006230 Medicago truncatula HOM05D003216 ORTHO05D002268 4.1e-29 133.7 178 38.8
Medtr5g062340 Medicago truncatula HOM05D003216 ORTHO05D002268 1.6e-28 131.7 179 37.4
TPR.G754 Trifolium pratense HOM05D003216 ORTHO05D002268 1.6e-28 131.7 130 48.5
Medtr2g061890 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-28 131.3 210 36.2
Medtr5g018790 Medicago truncatula HOM05D003216 ORTHO05D002268 2.7e-28 131.0 179 38.5
Medtr3g032550 Medicago truncatula HOM05D003216 ORTHO05D002268 4.6e-28 130.2 159 39.6
TPR.G7282 Trifolium pratense HOM05D003216 ORTHO05D002268 6.0e-28 129.8 127 50.4
TPR.G22501 Trifolium pratense HOM05D009380 ORTHO05D009933 1.0e-27 129.0 71 74.6
TPR.G40558 Trifolium pratense HOM05D003216 ORTHO05D002268 1.0e-27 129.0 166 42.8
TPR.G22845 Trifolium pratense HOM05D003216 ORTHO05D002268 1.3e-27 128.6 152 42.1
Medtr4g132765 Medicago truncatula HOM05D003216 ORTHO05D002268 1.7e-27 128.3 184 39.7
TPR.G40729 Trifolium pratense HOM05D003216 ORTHO05D002268 2.3e-27 127.9 133 46.6
Medtr1g016820 Medicago truncatula HOM05D003216 ORTHO05D002268 5.1e-27 126.7 179 36.9
Medtr3g437080 Medicago truncatula HOM05D003216 ORTHO05D002268 5.1e-27 126.7 140 42.1
Medtr7g029645 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-26 125.6 184 37.5
Medtr8g017510 Medicago truncatula HOM05D003216 ORTHO05D002268 2.5e-26 124.4 184 38.0
Medtr8g468040 Medicago truncatula HOM05D003216 ORTHO05D002268 2.5e-26 124.4 159 39.6
Medtr8g020437 Medicago truncatula HOM05D003216 ORTHO05D002268 3.3e-26 124.0 179 38.0
Medtr3g014480 Medicago truncatula HOM05D003216 ORTHO05D002268 5.6e-26 123.2 159 37.7
Medtr4g113170 Medicago truncatula HOM05D003216 ORTHO05D002268 1.6e-25 121.7 158 37.3
Medtr1g052720 Medicago truncatula HOM05D009380 ORTHO05D009933 2.8e-25 120.9 249 30.5
Medtr2g096070 Medicago truncatula HOM05D003216 ORTHO05D002268 3.6e-25 120.6 179 36.3
Medtr6g035400 Medicago truncatula HOM05D003216 ORTHO05D002268 8.1e-25 119.4 184 37.0
TPR.G27562 Trifolium pratense HOM05D003216 ORTHO05D002268 8.1e-25 119.4 118 45.8
TPR.G32043 Trifolium pratense HOM05D003216 ORTHO05D002268 1.1e-24 119.0 118 44.9
TPR.G17632 Trifolium pratense HOM05D003216 ORTHO05D002268 6.8e-24 116.3 118 44.9
Medtr6g084230 Medicago truncatula HOM05D003216 ORTHO05D002268 2.6e-23 114.4 160 40.0
Medtr6g465600 Medicago truncatula HOM05D009380 ORTHO05D009933 3.4e-23 114.0 232 28.4
TPR.G11014 Trifolium pratense HOM05D009380 ORTHO05D009933 4.4e-23 113.6 72 58.3
TPR.G16425 Trifolium pratense HOM05D003216 ORTHO05D002268 2.9e-22 110.9 117 42.7
Medtr8g040220 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-21 108.6 154 37.7
TPR.G17165 Trifolium pratense HOM05D003216 ORTHO05D002268 3.2e-21 107.5 171 35.7
Medtr4g065057 Medicago truncatula HOM05D003216 ORTHO05D002268 4.1e-21 107.1 156 37.8
Medtr5g039360 Medicago truncatula HOM05D003216 ORTHO05D002268 5.4e-21 106.7 141 40.4
Medtr4g048540 Medicago truncatula HOM05D003216 ORTHO05D002268 9.2e-21 105.9 142 38.7
Medtr5g037560 Medicago truncatula HOM05D003216 ORTHO05D002268 1.6e-20 105.1 144 36.8
Medtr8g463980 Medicago truncatula HOM05D003216 ORTHO05D002268 1.0e-19 102.4 176 31.8
TPR.G40026 Trifolium pratense HOM05D003216 ORTHO05D002268 1.3e-19 102.1 93 51.6
Medtr7g050355 Medicago truncatula HOM05D000096 ORTHO05D000045 3.0e-19 100.9 183 29.0
Medtr7g056013 Medicago truncatula HOM05D003216 ORTHO05D002268 3.0e-19 100.9 181 34.3
Medtr1g064700 Medicago truncatula HOM05D003216 ORTHO05D002268 3.9e-19 100.5 138 38.4
TPR.G1751 Trifolium pratense HOM05D003216 ORTHO05D002268 1.1e-18 99.0 159 40.9
TPR.G30446 Trifolium pratense HOM05D009380 ORTHO05D009933 1.1e-18 99.0 252 27.8
Medtr8g409330 Medicago truncatula HOM05D003216 ORTHO05D002268 3.3e-18 97.4 173 34.7
TPR.G14047 Trifolium pratense HOM05D003216 ORTHO05D002268 9.5e-18 95.9 125 43.2
Phvul.008G000100 Phaseolus vulgaris HOM05D000593 ORTHO05D000562 1.2e-17 95.5 157 33.8
Medtr2g436740 Medicago truncatula HOM05D003216 ORTHO05D002268 3.6e-17 94.0 118 39.0
Medtr3g087410 Medicago truncatula HOM05D003216 ORTHO05D002268 6.2e-17 93.2 184 33.2
Medtr1g101180 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-16 92.0 157 30.6
Medtr7g024793 Medicago truncatula HOM05D003216 ORTHO05D002268 2.4e-16 91.3 98 42.9
Medtr6g086765 Medicago truncatula HOM05D003216 ORTHO05D002268 5.2e-16 90.1 131 43.5
Medtr7g069450 Medicago truncatula HOM05D003216 ORTHO05D002268 6.8e-16 89.7 158 29.7
TPR.G5059 Trifolium pratense HOM05D009380 ORTHO05D009933 8.9e-16 89.4 251 27.5
CSS0006571 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.5e-15 88.6 165 30.9
CSS0033855 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 2.0e-15 88.2 165 30.9
Medtr3g044770 Medicago truncatula HOM05D003216 ORTHO05D002268 2.6e-15 87.8 109 42.2
CANSAT64G1746 Cannabis sativa HOM05D000593 ORTHO05D002268 3.4e-15 87.4 162 33.3
CANSAT64G1841 Cannabis sativa HOM05D000593 ORTHO05D002268 3.4e-15 87.4 162 33.3
Medtr2g461930 Medicago truncatula HOM05D003216 ORTHO05D002268 5.8e-15 86.7 159 32.1
TPR.G38697 Trifolium pratense HOM05D003216 ORTHO05D002268 7.6e-15 86.3 75 45.3
Medtr4g015450 Medicago truncatula HOM05D003216 ORTHO05D010126 1.7e-14 85.1 109 41.3
Medtr7g095760 Medicago truncatula HOM05D003216 ORTHO05D002268 4.9e-14 83.6 107 43.9
CSS0028555 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 8.4e-14 82.8 165 29.7
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 8.4e-14 82.8 76 42.1
Medtr2g067680 Medicago truncatula HOM05D003216 ORTHO05D002268 8.4e-14 82.8 109 34.9
CSS0009299 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.4e-13 82.0 170 29.4
TPR.G40224 Trifolium pratense HOM05D003216 ORTHO05D002268 1.9e-13 81.6 148 34.5
CSS0016602 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 3.2e-13 80.9 146 30.8
Lj6A78T35 Lonicera japonica HOM05D000011 ORTHO05D002639 9.2e-13 79.3 180 29.4
Medtr8g463970 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-12 79.0 97 45.4
CSS0037267 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.6e-12 78.6 160 30.0
Ca_10000_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.6e-12 78.6 157 30.6
Ca_25321_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 1.6e-12 78.6 159 31.4
Medtr0091s0090 Medicago truncatula HOM05D009380 ORTHO05D009933 2.1e-12 78.2 96 39.6
TPR.G8428 Trifolium pratense HOM05D009380 ORTHO05D009933 2.1e-12 78.2 219 28.3
TPR.G39932 Trifolium pratense HOM05D009380 ORTHO05D009933 4.6e-12 77.0 49 63.3
Ca_01383_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 6.0e-12 76.6 144 31.9
TWI74G1657 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 6.0e-12 76.6 153 30.7
Ca_07608_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002268 7.8e-12 76.3 150 32.7
TWI14G0423 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 7.8e-12 76.3 204 26.5
Ca_05375_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 1.0e-11 75.9 150 33.3
Ca_14741_v3 Cicer arietinum L. HOM05D003326 ORTHO05D001185 1.3e-11 75.5 150 32.0
RcHm_v2.0_Chr7g0206311 Rosa chinensis HOM05D000593 ORTHO05D000562 1.3e-11 75.5 167 29.3
ECA247G1059 Erigeron canadensis HOM05D000593 ORTHO05D002268 1.7e-11 75.1 158 29.7
TPR.G30694 Trifolium pratense HOM05D003216 ORTHO05D002268 1.7e-11 75.1 71 40.8
Medtr2g026620 Medicago truncatula HOM05D003216 ORTHO05D002268 2.3e-11 74.7 97 43.3
Medtr7g004990 Medicago truncatula HOM05D003216 ORTHO05D002268 2.3e-11 74.7 97 40.2
CSS0019902 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 3.9e-11 73.9 147 27.9
Medtr5g006100 Medicago truncatula HOM05D003216 ORTHO05D004526 5.1e-11 73.6 98 42.9
Aqoxy1G00859 Aquilegia oxysepala HOM05D003216 ORTHO05D002268 6.6e-11 73.2 160 26.9
Aqoxy5G01684 Aquilegia oxysepala HOM05D000593 ORTHO05D000562 6.6e-11 73.2 160 26.9
RcHm_v2.0_Chr1g0329481 Rosa chinensis HOM05D000593 ORTHO05D000562 8.7e-11 72.8 148 29.1
Ca_11017_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 1.1e-10 72.4 157 25.5
Ca_11910_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 1.1e-10 72.4 155 28.4
Medtr1g036180 Medicago truncatula HOM05D003216 ORTHO05D002268 1.5e-10 72.0 148 33.8
Medtr8g064960 Medicago truncatula HOM05D009380 ORTHO05D009933 1.5e-10 72.0 93 36.6
TWI73G0339 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.5e-10 72.0 120 34.2
TWI73G0826 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.5e-10 72.0 153 29.4
MD05G1031400 Malus domestica HOM05D000593 ORTHO05D000562 1.9e-10 71.6 157 28.7
MD10G1032900 Malus domestica HOM05D000593 ORTHO05D000562 1.9e-10 71.6 157 28.7
FvH4_7g04391 Fragaria vesca HOM05D000593 ORTHO05D000562 2.5e-10 71.2 159 27.7
Atru.chr2.576 Acer truncatum HOM05D000593 ORTHO05D000562 5.6e-10 70.1 149 27.5
Actinidia22184 Actinidia chinensis HOM05D000455 ORTHO05D000434 5.6e-10 70.1 208 26.0
Medtr5g032220 Medicago truncatula HOM05D000593 ORTHO05D000562 5.6e-10 70.1 104 36.5
Atru.chr4.890 Acer truncatum HOM05D000593 ORTHO05D000562 7.3e-10 69.7 149 27.5
Medtr5g094740 Medicago truncatula HOM05D003834 ORTHO05D004483 7.3e-10 69.7 123 34.1
TPR.G24026 Trifolium pratense HOM05D009380 ORTHO05D009933 9.6e-10 69.3 105 34.3
Atru.chr6.1396 Acer truncatum HOM05D000593 ORTHO05D000562 1.3e-09 68.9 166 25.3
Medtr4g050580 Medicago truncatula HOM05D003216 ORTHO05D002268 1.3e-09 68.9 96 38.5
Medtr1g111720 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-09 68.2 133 27.8
CANSAT54G0060 Cannabis sativa HOM05D003216 ORTHO05D002268 3.6e-09 67.4 157 29.3
Ca_14497_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 3.6e-09 67.4 102 34.3
Medtr1g087870 Medicago truncatula HOM05D008463 ORTHO05D009933 4.8e-09 67.0 96 33.3
TWI81G0284 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 4.8e-09 67.0 141 30.5
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.1e-08 65.9 166 27.1
Atru.chr11.1014 Acer truncatum HOM05D000593 ORTHO05D000562 1.4e-08 65.5 157 26.1
Medtr7g033500 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-08 65.5 80 40.0
Psat0ss4104g0080 Pisum sativum HOM05D008463 ORTHO05D009933 1.4e-08 65.5 114 28.9
CSS0014323 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.8e-08 65.1 140 30.0
TWI75G0109 Tripterygium wilfordii HOM05D003216 ORTHO05D002268 1.8e-08 65.1 135 30.4
Medtr5g017770 Medicago truncatula HOM05D003216 ORTHO05D002268 2.4e-08 64.7 92 39.1
TPR.G29741 Trifolium pratense HOM05D000593 ORTHO05D002268 2.4e-08 64.7 83 44.6
Medtr2g451140 Medicago truncatula HOM05D003216 ORTHO05D002268 3.1e-08 64.3 100 36.0
Medtr3g072200 Medicago truncatula HOM05D003216 ORTHO05D002268 3.1e-08 64.3 91 38.5
Medtr7g110090 Medicago truncatula HOM05D008463 ORTHO05D009933 4.0e-08 63.9 125 32.8
Ca_13826_v3 Cicer arietinum L. HOM05D000593 ORTHO05D004526 5.3e-08 63.5 90 38.9
Medtr1g047540 Medicago truncatula HOM05D008463 ORTHO05D009933 5.3e-08 63.5 217 25.3
CANSAT01G1396 Cannabis sativa HOM05D000593 ORTHO05D000562 6.9e-08 63.2 133 32.3
Medtr0091s0080 Medicago truncatula HOM05D009380 ORTHO05D009933 6.9e-08 63.2 82 34.1
Medtr1g015680 Medicago truncatula HOM05D003216 ORTHO05D002268 6.9e-08 63.2 69 46.4
Medtr3g088695 Medicago truncatula HOM05D003216 ORTHO05D002268 6.9e-08 63.2 110 36.4
MD08G1164400 Malus domestica HOM05D000593 ORTHO05D000562 1.5e-07 62.0 153 26.1
Medtr3g104445 Medicago truncatula HOM05D003216 ORTHO05D002268 1.5e-07 62.0 86 32.6
Medtr3g452180 Medicago truncatula HOM05D008463 ORTHO05D009933 1.5e-07 62.0 125 32.8
Rhsim01G0176400 Rhododendron simsii HOM05D003216 ORTHO05D002268 1.5e-07 62.0 159 25.8
Rhsim06G0090900 Rhododendron simsii HOM05D003216 ORTHO05D002268 1.5e-07 62.0 159 25.8
Medtr6g059570 Medicago truncatula HOM05D003216 ORTHO05D002268 2.0e-07 61.6 74 40.5
TWI63G0793 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 2.0e-07 61.6 156 28.2
Medtr2g034775 Medicago truncatula HOM05D003216 ORTHO05D002268 2.6e-07 61.2 96 37.5
Medtr1g023090 Medicago truncatula HOM05D003216 ORTHO05D002268 3.4e-07 60.8 70 42.9
Medtr6g084295 Medicago truncatula HOM05D003216 ORTHO05D002268 3.4e-07 60.8 52 48.1
Medtr1g103800 Medicago truncatula HOM05D003216 ORTHO05D002268 4.4e-07 60.5 79 39.2
Medtr6g004370 Medicago truncatula HOM05D003216 ORTHO05D002268 4.4e-07 60.5 68 42.6
TPR.G19405 Trifolium pratense HOM05D003216 ORTHO05D002268 5.8e-07 60.1 164 26.2
Medtr1g089160 Medicago truncatula HOM05D003216 ORTHO05D002268 7.6e-07 59.7 82 41.5
TWI59G0546 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.3e-06 58.9 146 27.4
Medtr5g028280 Medicago truncatula HOM05D003216 ORTHO05D002268 1.7e-06 58.5 77 39.0
Medtr5g071980 Medicago truncatula HOM05D003216 ORTHO05D002268 1.7e-06 58.5 78 37.2
Medtr7g055617 Medicago truncatula HOM05D003216 ORTHO05D002268 2.2e-06 58.2 87 36.8
Oeu035640.1 Olea europaea HOM05D000593 ORTHO05D000562 2.2e-06 58.2 118 31.4
Oeu064531.1 Olea europaea HOM05D000593 ORTHO05D002268 3.8e-06 57.4 115 31.3
Medtr1g024975 Medicago truncatula HOM05D003216 ORTHO05D002268 6.4e-06 56.6 73 31.5
Medtr5g413325 Medicago truncatula HOM05D003216 ORTHO05D002268 6.4e-06 56.6 69 40.6
Medtr6g089230 Medicago truncatula HOM05D003216 ORTHO05D004526 6.4e-06 56.6 56 41.1


User provided reference genes

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