Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9572 Trifolium pratense HOM05D007799 ORTHO05D009854 1.7e-108 396.0 192 100.0
Medtr8g079475 Medicago truncatula HOM05D007799 ORTHO05D009854 9.0e-86 320.5 187 82.4
Glyma.05G143400 Glycine max HOM05D007799 ORTHO05D009854 4.5e-77 291.6 187 75.9
Glyma.08G099800 Glycine max HOM05D007799 ORTHO05D009854 4.9e-76 288.1 187 75.4
VMungo0251G0945 Vigna mungo HOM05D007799 ORTHO05D009854 7.4e-72 274.2 181 73.5
Glyma.13G221700 Glycine max HOM05D007799 ORTHO05D009854 4.9e-68 261.5 187 67.9
Phvul.002G177900 Phaseolus vulgaris HOM05D007799 ORTHO05D009854 6.5e-68 261.2 181 70.2
Glyma.15G090500 Glycine max HOM05D007799 ORTHO05D009854 8.4e-68 260.8 187 67.9
Lj6g0006831 Lotus japonicus HOM05D007799 ORTHO05D009854 2.5e-67 259.2 186 68.8
Lalb_Chr13g0294011 Lupinus albus HOM05D007799 ORTHO05D009854 1.8e-65 253.1 186 65.6
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 6.7e-65 251.1 187 66.8
Phvul.006G168136 Phaseolus vulgaris HOM05D007799 ORTHO05D009854 1.1e-64 250.4 188 65.4
arahy.Tifrunner.gnm1.ann1.W0WEAA Arachis hypogaea HOM05D007799 ORTHO05D009854 1.9e-64 249.6 187 66.3
Medtr2g018670 Medicago truncatula HOM05D007799 ORTHO05D009854 2.5e-64 249.2 187 65.2
Lalb_Chr20g0117681 Lupinus albus HOM05D007799 ORTHO05D009854 3.3e-64 248.8 184 66.8
TPR.G26257 Trifolium pratense HOM05D007799 ORTHO05D009854 5.7e-64 248.1 184 66.8
VMungo0540G2150 Vigna mungo HOM05D007799 ORTHO05D009854 9.7e-64 247.3 188 64.9
Ca_00511_v3 Cicer arietinum L. HOM05D007799 ORTHO05D009854 2.8e-63 245.7 187 63.6
arahy.Tifrunner.gnm1.ann1.80ML42 Arachis hypogaea HOM05D007799 ORTHO05D009854 6.9e-62 241.1 188 64.4
Lalb_Chr15g0086631 Lupinus albus HOM05D007799 ORTHO05D009854 1.2e-61 240.4 186 65.6
arahy.Tifrunner.gnm1.ann1.NZ6SRJ Arachis hypogaea HOM05D007799 ORTHO05D009854 2.6e-61 239.2 188 63.3
Psat1g192080 Pisum sativum HOM05D007799 ORTHO05D009854 5.9e-61 238.0 187 63.1
Manes.15G125000 Manihot esculenta HOM05D007799 ORTHO05D009854 3.7e-55 218.8 183 57.4
Eucgr.D00266 Eucalyptus grandis HOM05D007799 ORTHO05D009854 1.1e-54 217.2 187 55.6
Duzib192G0648 Durio zibethinus HOM05D007799 ORTHO05D009854 1.8e-54 216.5 183 56.3
QL05p055084 Quercus lobata HOM05D007799 ORTHO05D009854 6.9e-54 214.5 188 57.4
Thecc.06G144300 Theobroma cacao HOM05D007799 ORTHO05D009854 5.0e-52 208.4 180 53.9
Actinidia32344 Actinidia chinensis HOM05D007799 ORTHO05D009854 8.5e-52 207.6 182 54.9
Cfa000897 Carpinus fangiana HOM05D007799 ORTHO05D009854 1.1e-51 207.2 187 54.0
Atru.chr10.1081 Acer truncatum HOM05D007799 ORTHO05D009854 2.5e-51 206.1 161 59.6
Duzib235G1165 Durio zibethinus HOM05D007799 ORTHO05D009854 1.8e-49 199.9 181 53.6
RcHm_v2.0_Chr5g0014941 Rosa chinensis HOM05D007799 ORTHO05D009854 2.3e-49 199.5 191 51.3
Prupe.4G085700 Prunus persica HOM05D007799 ORTHO05D009854 8.8e-49 197.6 169 57.4
COL.COLO4_31009 Corchorus olitorius HOM05D007799 ORTHO05D009854 1.1e-48 197.2 165 57.0
Ciclev10016395m.g Citrus clementina HOM05D007799 ORTHO05D009854 1.5e-48 196.8 189 51.3
MD10G1258100 Malus domestica HOM05D007799 ORTHO05D009854 2.0e-48 196.4 186 53.2
CiPaw.10G088800 Carya illinoinensis HOM05D007799 ORTHO05D009854 2.6e-48 196.1 191 50.8
Rhsim13G0117700 Rhododendron simsii HOM05D007799 ORTHO05D009854 2.6e-48 196.1 160 58.1
Dinv32213 Davidia involucrata HOM05D007799 ORTHO05D009854 1.7e-47 193.4 180 56.1
FAN16G3425 Fragaria x ananassa HOM05D007799 ORTHO05D009854 1.7e-47 193.4 185 51.9
CiPaw.09G119600 Carya illinoinensis HOM05D007799 ORTHO05D009854 2.8e-47 192.6 189 50.8
FvH4_3g05030 Fragaria vesca HOM05D007799 ORTHO05D009854 1.1e-46 190.7 185 51.4
FAN11G0145 Fragaria x ananassa HOM05D007799 ORTHO05D009854 1.1e-46 190.7 185 51.4
FAN25G3832 Fragaria x ananassa HOM05D007799 ORTHO05D009854 1.1e-46 190.7 185 51.4
Potri.011G081701 Populus trichocarpa HOM05D007799 ORTHO05D009854 1.4e-46 190.3 166 54.8
CSS0035706 Camellia sinensis var. sinensis HOM05D007799 ORTHO05D009854 2.4e-46 189.5 171 57.3
Cc00_g02020 Coffea canephora HOM05D007799 ORTHO05D009854 3.1e-46 189.1 183 51.4
FAN21G3556 Fragaria x ananassa HOM05D007799 ORTHO05D009854 5.3e-46 188.3 185 50.8
GSVIVG01021549001 Vitis vinifera HOM05D007799 ORTHO05D009854 5.3e-46 188.3 186 51.1
CSS0034958 Camellia sinensis var. sinensis HOM05D007799 ORTHO05D009854 1.2e-45 187.2 171 56.7
MD05G1279400 Malus domestica HOM05D007799 ORTHO05D009854 1.2e-45 187.2 168 54.8
CANSAT35G1982 Cannabis sativa HOM05D007799 ORTHO05D009854 1.5e-45 186.8 193 52.3
Peaxi162Scf00045g02414 Petunia axillaris HOM05D007799 ORTHO05D009854 1.3e-44 183.7 181 53.6
Gorai.010G237400 Gossypium raimondii HOM05D007799 ORTHO05D009854 5.0e-44 181.8 167 54.5
MBI02_g12199_MAGBIO Magnolia biondii HOM05D007799 ORTHO05D009854 1.1e-43 180.6 178 48.9
PGR083G2472 Punica granatum HOM05D007799 ORTHO05D009854 1.4e-43 180.3 199 47.7
Gohir.A06G196000 Gossypium hirsutum HOM05D007799 ORTHO05D009854 2.5e-43 179.5 167 53.9
vmacro03431 Vaccinium macrocarpon HOM05D007799 ORTHO05D009854 2.5e-43 179.5 186 51.6
Haze_05684 Corylus avellana HOM05D007799 ORTHO05D009854 5.5e-43 178.3 167 52.1
MBI18_g11218_MAGBIO Magnolia biondii HOM05D007799 ORTHO05D009854 9.4e-43 177.6 179 46.9
PGSC0003DMG400002292 Solanum tuberosum HOM05D007799 ORTHO05D009854 9.4e-43 177.6 181 50.8
Oeu032721.1 Olea europaea HOM05D007799 ORTHO05D009854 1.2e-42 177.2 160 53.1
Nitab4.5_0005655g0010 Nicotiana tabacum HOM05D007799 ORTHO05D009854 4.7e-42 175.3 182 50.5
Gohir.D06G203500 Gossypium hirsutum HOM05D007799 ORTHO05D009854 8.0e-42 174.5 153 54.2
Migut.K01168 Erythranthe guttata HOM05D007799 ORTHO05D009854 1.5e-40 170.2 152 51.3
CsaV3_1G036880 Cucumis sativus L. HOM05D007799 ORTHO05D009854 2.2e-39 166.4 184 48.9
Oeu031191.1 Olea europaea HOM05D007799 ORTHO05D009854 4.8e-39 165.2 160 51.9
ClCG03G006490 Citrullus lanatus HOM05D007799 ORTHO05D009854 1.4e-38 163.7 165 50.9
DCAR_003890 Daucus carota HOM05D007799 ORTHO05D009854 1.6e-37 160.2 179 45.8
Sed0012400 Sechium edule HOM05D007799 ORTHO05D009854 1.0e-36 157.5 158 50.0
Nn3g20329 Nelumbo nucifera HOM05D007799 ORTHO05D009854 1.7e-36 156.8 140 54.3
HPP92_026553 Vanilla planifolia HOM05D007799 ORTHO05D009854 2.2e-36 156.4 179 40.8
ECA236G2997 Erigeron canadensis HOM05D007799 ORTHO05D009854 5.0e-36 155.2 189 43.9
SalBow8G4130 Salvia bowleyana HOM05D007799 ORTHO05D009854 5.0e-36 155.2 166 45.8
HanXRQChr15g0482011 Helianthus annuus HOM05D007799 ORTHO05D009854 1.5e-35 153.7 181 44.2
Nitab4.5_0000315g0030 Nicotiana tabacum HOM05D007799 ORTHO05D009854 4.2e-35 152.1 162 49.4
Lsat_1_v5_gn_7_27461 Lactuca sativa HOM05D007799 ORTHO05D009854 2.7e-34 149.4 183 43.2
Sopen08g008720 Solanum pennellii HOM05D007799 ORTHO05D009854 2.8e-31 139.4 156 47.4
Solyc08g023510.3 Solanum lycopersicum HOM05D007799 ORTHO05D009854 2.7e-29 132.9 149 47.7
ATR1098G006 Amborella trichopoda HOM05D007799 ORTHO05D009854 1.0e-28 131.0 168 38.7
CDE12G0863 Ceratophyllum demersum HOM05D007799 ORTHO05D009854 3.8e-28 129.0 170 39.4
HanXRQChr04g0116571 Helianthus annuus HOM05D007799 ORTHO05D009854 5.0e-28 128.6 180 41.7
HPP92_028169 Vanilla planifolia HOM05D007799 ORTHO05D009854 3.2e-27 125.9 164 36.6
DCAR_007872 Daucus carota HOM05D007799 ORTHO05D009854 4.2e-27 125.6 174 40.2
TAR624G0778 Trochodendron aralioides HOM05D007799 ORTHO05D009854 5.2e-25 118.6 99 56.6
MELO3C035703.2 Cucumis melo HOM05D007799 ORTHO05D009854 4.2e-19 99.0 93 51.6
HPP92_026526 Vanilla planifolia HOM05D007799 ORTHO05D009854 4.7e-18 95.5 110 40.0
SEGI_29226 Sequoiadendron giganteum HOM05D007799 ORTHO05D009854 2.4e-14 83.2 169 30.8
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 3.8e-12 75.9 57 59.6
SEGI_17039 Sequoiadendron giganteum HOM05D014396 ORTHO05D017117 5.4e-06 55.5 123 26.8


User provided reference genes

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