Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 3.1e-153 545.0 266 100.0
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 3.0e-108 395.6 233 83.7
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 9.8e-99 364.0 214 79.0
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 9.8e-99 364.0 218 80.7
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 1.2e-91 340.5 233 70.0
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 9.8e-91 337.4 233 69.5
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 2.5e-86 322.8 230 67.8
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 7.3e-86 321.2 229 67.7
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 4.7e-85 318.5 228 67.1
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 4.7e-85 318.5 229 66.8
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.1e-81 307.4 229 65.1
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 6.0e-80 301.6 206 69.4
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 4.3e-78 295.4 212 67.9
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.1e-77 293.1 217 63.1
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 6.2e-77 291.6 213 64.8
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 1.4e-76 290.4 213 63.8
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 4.0e-76 288.9 209 67.0
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 2.6e-75 286.2 221 62.4
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 3.8e-74 282.3 227 62.1
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 3.8e-74 282.3 227 59.9
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 4.9e-74 282.0 225 61.8
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 1.1e-73 280.8 233 58.4
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 1.9e-73 280.0 205 62.9
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 3.2e-73 279.3 193 67.9
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.2e-72 277.3 219 61.2
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 3.5e-72 275.8 228 57.0
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 3.5e-72 275.8 205 62.9
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 4.6e-72 275.4 205 60.5
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 7.8e-72 274.6 203 61.6
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 7.8e-72 274.6 229 59.0
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.3e-71 273.9 209 61.7
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 3.9e-71 272.3 217 61.3
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 8.6e-71 271.2 206 62.1
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.1e-70 270.8 210 61.4
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.1e-70 270.8 210 61.4
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.1e-70 270.8 194 64.9
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 1.5e-70 270.4 228 56.1
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.5e-70 269.6 204 63.2
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.1e-69 266.5 197 63.5
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 2.1e-69 266.5 206 60.7
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 2.8e-69 266.2 227 56.8
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.6e-69 265.8 205 60.5
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 4.7e-69 265.4 221 59.3
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 1.1e-68 264.2 201 61.2
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 1.4e-68 263.8 194 62.9
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 2.4e-68 263.1 208 60.1
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.0e-68 262.3 223 58.3
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 9.0e-68 261.2 188 63.3
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 1.5e-67 260.4 228 57.0
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 2.0e-67 260.0 219 57.5
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 2.0e-67 260.0 229 56.8
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 2.6e-67 259.6 210 59.5
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 4.4e-67 258.8 215 58.1
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 4.4e-67 258.8 216 59.3
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 4.4e-67 258.8 227 55.9
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 7.6e-67 258.1 214 56.1
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 1.3e-66 257.3 228 55.3
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 2.2e-66 256.5 206 59.2
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.2e-66 256.5 210 57.6
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 3.8e-66 255.8 212 57.1
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.8e-66 255.8 191 62.8
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 4.9e-66 255.4 187 64.2
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 8.4e-66 254.6 225 55.1
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 8.4e-66 254.6 188 63.3
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.1e-65 254.2 223 54.7
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 1.1e-65 254.2 223 56.1
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.4e-65 253.8 209 58.4
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.9e-65 253.4 253 52.2
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.9e-65 253.4 216 56.9
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 5.4e-65 251.9 212 58.0
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 5.4e-65 251.9 227 54.6
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 7.1e-65 251.5 201 60.7
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 9.3e-65 251.1 193 60.1
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.2e-64 250.8 218 56.0
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 2.1e-64 250.0 190 61.1
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 3.5e-64 249.2 208 59.6
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 4.6e-64 248.8 207 57.5
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.8e-64 248.1 202 58.9
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 7.8e-64 248.1 187 62.0
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 1.0e-63 247.7 184 62.0
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.7e-63 246.9 200 61.0
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.7e-63 246.9 220 55.0
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 2.3e-63 246.5 213 55.4
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.0e-63 246.1 211 56.9
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 5.1e-63 245.4 218 54.6
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 5.1e-63 245.4 200 60.5
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 6.6e-63 245.0 216 55.1
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.1e-62 244.2 214 56.5
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 1.5e-62 243.8 197 56.3
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.5e-62 243.8 214 56.1
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 3.3e-62 242.7 200 60.5
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 3.3e-62 242.7 200 60.5
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 3.3e-62 242.7 135 85.2
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.3e-62 242.7 219 56.6
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.3e-62 242.7 219 56.6
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 4.3e-62 242.3 213 54.5
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 5.6e-62 241.9 213 54.9
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 7.3e-62 241.5 195 58.5
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 9.6e-62 241.1 196 59.7
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 9.6e-62 241.1 207 57.5
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 1.6e-61 240.4 218 55.0
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.6e-61 240.4 231 50.2
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.6e-61 240.4 227 53.7
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 2.1e-61 240.0 231 49.8
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.8e-61 239.6 213 54.0
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 2.8e-61 239.6 219 53.0
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 4.8e-61 238.8 225 53.3
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 6.2e-61 238.4 214 54.7
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 6.2e-61 238.4 204 55.9
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.4e-60 237.3 231 49.4
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 2.4e-60 236.5 206 55.3
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.4e-60 236.5 228 50.9
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 3.1e-60 236.1 206 55.3
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 3.1e-60 236.1 213 52.6
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 4.0e-60 235.7 212 52.4
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 4.0e-60 235.7 231 48.5
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 5.3e-60 235.3 214 54.7
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 5.3e-60 235.3 214 54.7
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 9.0e-60 234.6 212 52.4
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 1.2e-59 234.2 218 56.0
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.6e-59 233.0 246 49.2
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 2.2e-58 229.9 198 54.5
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.1e-57 227.6 219 54.3
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 2.4e-57 226.5 215 52.1
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.6e-56 222.2 188 54.3
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 6.0e-56 221.9 227 50.7
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 6.0e-56 221.9 200 54.0
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 1.3e-55 220.7 217 50.7
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 3.0e-55 219.5 219 49.8
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 1.5e-54 217.2 191 51.8
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 3.3e-54 216.1 211 50.2
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.3e-53 214.2 165 63.0
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.6e-53 213.8 226 47.3
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.4e-52 210.7 192 51.6
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.8e-52 210.3 199 48.2
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.6e-51 204.9 192 50.0
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.2e-50 203.4 214 49.1
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 2.7e-48 196.4 215 50.2
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 7.9e-48 194.9 148 59.5
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 2.3e-47 193.4 199 49.2
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.9e-46 190.3 225 48.4
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.1e-44 184.5 144 59.0
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.1e-44 184.5 212 48.6
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.2e-43 181.0 168 52.4
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.2e-43 181.0 194 51.0
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 1.5e-43 180.6 144 61.8
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 2.6e-43 179.9 127 66.9
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 7.1e-41 171.8 216 40.3
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.7e-34 150.6 165 48.5
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 3.2e-33 146.4 111 63.1
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 2.1e-32 143.7 96 69.8
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 2.3e-31 140.2 115 59.1
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.9e-31 139.4 96 66.7
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 1.3e-29 134.4 207 37.7
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.3e-29 132.1 96 65.6
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 8.2e-29 131.7 209 34.4
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.4e-28 131.0 112 53.6
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 6.9e-28 128.6 110 53.6
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 1.3e-26 124.4 112 54.5
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.7e-26 124.0 157 45.9
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.9e-25 120.6 110 50.0
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 7.2e-25 118.6 136 47.1
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 2.1e-24 117.1 110 48.2
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 8.8e-23 111.7 175 35.4
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 7.4e-22 108.6 100 49.0
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.7e-21 107.5 107 48.6
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 2.2e-21 107.1 91 54.9
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.8e-21 106.7 89 52.8
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 6.3e-21 105.5 117 52.1
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 6.9e-20 102.1 174 33.3
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 4.5e-19 99.4 88 48.9
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.9e-17 94.0 62 66.1
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 2.1e-16 90.5 85 45.9
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 2.0e-14 84.0 77 46.8
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.0e-14 84.0 63 61.9
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 4.8e-13 79.3 59 62.7
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 6.5e-10 68.9 58 55.2


User provided reference genes

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