Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 2.6e-92 342.0 171 100.0
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 1.8e-61 239.6 127 91.3
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 6.8e-61 237.7 127 91.3
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 6.4e-59 231.1 127 89.0
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.4e-58 229.9 128 89.1
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.9e-58 229.6 127 89.0
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.9e-58 229.6 127 86.6
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 7.1e-58 227.6 127 86.6
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 1.2e-57 226.9 127 86.6
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 3.5e-57 225.3 127 85.0
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 3.5e-57 225.3 134 80.6
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 3.5e-57 225.3 134 80.6
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 6.6e-56 221.1 127 83.5
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.1e-55 220.3 127 83.5
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 4.3e-55 218.4 127 83.5
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 7.3e-55 217.6 127 82.7
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 1.6e-54 216.5 127 82.7
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.1e-54 216.1 124 83.9
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 2.1e-54 216.1 127 82.7
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 6.2e-54 214.5 124 82.3
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 8.1e-54 214.2 128 82.0
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 8.1e-54 214.2 128 82.0
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 8.1e-54 214.2 127 81.9
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.1e-54 214.2 127 81.9
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 8.1e-54 214.2 125 84.0
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.1e-53 213.8 124 81.5
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.4e-53 213.4 124 81.5
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.8e-53 213.0 127 81.9
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.3e-53 212.6 127 81.1
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.3e-53 212.6 127 81.1
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 3.1e-53 212.2 127 81.1
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 3.1e-53 212.2 128 80.5
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.1e-53 212.2 127 81.1
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 5.2e-53 211.5 125 81.6
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 5.2e-53 211.5 127 81.1
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 5.2e-53 211.5 127 80.3
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 6.8e-53 211.1 127 79.5
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 6.8e-53 211.1 127 79.5
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.2e-52 210.3 128 78.1
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 2.6e-52 209.1 127 80.3
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 3.4e-52 208.8 127 78.7
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 5.8e-52 208.0 127 79.5
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 5.8e-52 208.0 127 78.7
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 5.8e-52 208.0 126 78.6
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 7.6e-52 207.6 127 79.5
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 7.6e-52 207.6 127 78.0
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 9.9e-52 207.2 125 80.0
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-51 206.5 127 79.5
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 2.2e-51 206.1 118 83.1
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 2.2e-51 206.1 129 78.3
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.9e-51 205.7 118 83.1
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 2.9e-51 205.7 127 78.7
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 4.9e-51 204.9 127 77.2
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 6.4e-51 204.5 129 77.5
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 8.3e-51 204.1 128 78.1
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 8.3e-51 204.1 128 78.1
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 1.1e-50 203.8 127 77.2
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.1e-50 203.8 127 77.2
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.4e-50 203.4 127 76.4
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.4e-50 203.4 127 76.4
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.4e-50 203.4 126 77.0
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 1.4e-50 203.4 147 68.7
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.9e-50 203.0 126 76.2
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.4e-50 202.6 128 77.3
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 4.1e-50 201.8 128 77.3
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 4.1e-50 201.8 126 74.6
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 4.1e-50 201.8 126 74.6
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.4e-50 201.4 128 76.6
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 5.4e-50 201.4 127 77.2
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 5.4e-50 201.4 128 76.6
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 7.1e-50 201.1 128 76.6
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 7.1e-50 201.1 128 71.9
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 7.1e-50 201.1 128 75.8
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 7.1e-50 201.1 126 75.4
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 9.2e-50 200.7 127 77.2
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 9.2e-50 200.7 130 76.2
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 9.2e-50 200.7 125 77.6
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.2e-49 200.3 125 77.6
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 1.2e-49 200.3 127 76.4
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 1.2e-49 200.3 127 76.4
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 1.6e-49 199.9 124 75.0
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.5e-49 198.7 128 76.6
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 4.6e-49 198.4 126 74.6
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 7.8e-49 197.6 128 73.4
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 7.8e-49 197.6 129 75.2
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.0e-48 197.2 127 75.6
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.3e-48 196.1 126 73.8
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 3.0e-48 195.7 126 73.0
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 1.1e-47 193.7 130 72.3
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 1.1e-47 193.7 127 74.8
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.5e-47 193.4 127 73.2
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 1.5e-47 193.4 127 73.2
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.9e-47 193.0 127 72.4
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 1.9e-47 193.0 127 73.2
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 1.9e-47 193.0 127 73.2
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 1.9e-47 193.0 126 72.2
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 3.3e-47 192.2 127 73.2
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 5.6e-47 191.4 127 73.2
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 5.6e-47 191.4 127 73.2
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 5.6e-47 191.4 127 73.2
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 7.3e-47 191.0 127 73.2
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 9.6e-47 190.7 127 73.2
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 9.6e-47 190.7 126 70.6
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.2e-46 190.3 127 72.4
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.6e-46 188.7 133 67.7
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 6.2e-46 188.0 127 74.0
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 2.4e-45 186.0 125 76.8
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 5.2e-45 184.9 128 71.1
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 2.6e-44 182.6 127 67.7
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 2.2e-43 179.5 109 76.1
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.4e-42 174.9 106 80.2
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 2.1e-41 172.9 171 55.0
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 3.9e-40 168.7 127 69.3
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.9e-39 166.4 96 79.2
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 4.9e-35 151.8 87 85.1
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 5.4e-34 148.3 88 78.4
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.1e-31 140.6 103 69.9
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 6.2e-30 134.8 82 76.8
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 3.4e-28 129.0 98 65.3
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 1.1e-26 124.0 74 82.4
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 7.1e-26 121.3 89 67.4
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.3e-24 117.1 78 70.5
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 4.3e-23 112.1 88 60.2
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 9.6e-23 110.9 127 52.0
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.2e-20 104.0 67 73.1
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.4e-20 102.4 61 80.3
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.3e-19 100.5 67 73.1
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 1.7e-19 100.1 85 50.6
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.1e-18 97.4 57 82.5
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 2.5e-15 86.3 97 49.5
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 5.7e-15 85.1 51 84.3
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.3e-14 84.0 114 49.1
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.9e-08 62.4 65 50.8
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 1.1e-07 60.8 59 45.8
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.3e-06 57.4 40 60.0


User provided reference genes

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