Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 1.7e-146 522.7 271 100.0
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 1.3e-101 373.6 281 71.9
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 2.8e-101 372.5 278 71.9
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 8.2e-93 344.4 280 69.6
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 2.8e-85 319.3 283 62.9
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 1.2e-83 313.9 284 63.0
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 2.2e-82 309.7 282 61.7
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 1.6e-80 303.5 282 61.7
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 5.2e-79 298.5 285 61.1
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 1.6e-75 287.0 288 57.3
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 3.3e-70 269.2 288 54.2
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 1.3e-69 267.3 286 54.5
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 1.3e-69 267.3 167 77.2
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.7e-69 266.9 280 52.9
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 1.8e-68 263.5 287 52.3
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 1.8e-68 263.5 279 53.4
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 3.1e-68 262.7 275 53.5
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 4.1e-68 262.3 294 52.7
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 7.0e-68 261.5 278 54.3
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 9.1e-68 261.2 273 53.8
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.2e-67 260.8 273 53.1
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 2.0e-67 260.0 249 57.0
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 2.7e-67 259.6 284 53.9
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 3.5e-67 259.2 291 51.9
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 5.9e-67 258.5 282 51.8
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 7.7e-67 258.1 257 54.9
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 1.0e-66 257.7 275 52.4
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.7e-66 256.9 158 76.6
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 2.9e-66 256.1 286 52.8
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 3.8e-66 255.8 165 71.5
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 8.5e-66 254.6 283 53.0
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 1.1e-65 254.2 163 75.5
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 4.2e-65 252.3 159 75.5
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 7.2e-65 251.5 282 50.7
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 7.2e-65 251.5 157 75.2
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 9.4e-65 251.1 286 51.4
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 9.4e-65 251.1 157 77.1
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.2e-64 250.8 160 73.1
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 2.1e-64 250.0 158 74.1
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 2.7e-64 249.6 158 74.1
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 4.7e-64 248.8 160 72.5
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.0e-63 247.7 159 73.6
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.8e-63 246.9 282 50.7
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 2.3e-63 246.5 247 57.1
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.3e-63 246.5 282 50.4
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 2.3e-63 246.5 156 76.3
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 3.0e-63 246.1 158 75.3
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 3.0e-63 246.1 282 48.6
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 6.8e-63 245.0 158 76.6
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.0e-62 243.4 278 48.6
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 4.4e-62 242.3 167 71.9
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 5.7e-62 241.9 158 73.4
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 9.8e-62 241.1 164 69.5
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 1.3e-61 240.7 247 55.5
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 1.3e-61 240.7 176 66.5
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 1.7e-61 240.4 158 70.3
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 2.2e-61 240.0 159 68.6
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 2.8e-61 239.6 158 71.5
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 1.1e-60 237.7 159 67.9
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 1.1e-60 237.7 159 69.2
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 1.4e-60 237.3 156 71.2
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 1.4e-60 237.3 157 68.8
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.8e-60 236.9 156 71.8
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 3.1e-60 236.1 159 67.9
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 4.1e-60 235.7 159 66.7
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 5.4e-60 235.3 158 68.4
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 7.0e-60 235.0 158 67.7
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 9.1e-60 234.6 156 71.2
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.0e-59 233.4 158 67.1
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.0e-59 233.4 263 51.0
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 1.0e-58 231.1 159 66.0
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 1.3e-58 230.7 187 61.5
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.3e-58 230.7 308 44.8
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 3.8e-58 229.2 158 66.5
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 8.6e-58 228.0 158 65.2
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 4.2e-57 225.7 156 66.0
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.8e-56 223.0 150 72.0
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 3.6e-56 222.6 156 64.7
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 6.1e-56 221.9 160 68.8
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 4.0e-55 219.2 146 69.9
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 6.8e-55 218.4 156 64.7
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.5e-54 217.2 166 65.1
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 2.6e-54 216.5 252 49.6
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.4e-54 216.1 165 64.8
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 4.4e-54 215.7 291 46.7
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 9.8e-54 214.5 141 70.9
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 2.8e-53 213.0 126 79.4
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.3e-53 211.8 243 51.0
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.4e-52 210.7 146 70.5
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.1e-52 209.5 247 51.0
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 4.1e-52 209.1 250 48.4
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 5.4e-52 208.8 138 72.5
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 5.4e-52 208.8 244 50.8
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 4.5e-51 205.7 166 57.8
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 7.8e-51 204.9 208 53.8
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.3e-50 204.1 215 54.0
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 3.8e-50 202.6 189 57.7
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 7.3e-49 198.4 157 64.3
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 2.1e-48 196.8 249 46.6
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.7e-48 195.7 215 51.6
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 4.7e-48 195.7 126 73.8
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 5.2e-47 192.2 126 68.3
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 5.2e-47 192.2 126 68.3
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.2e-46 191.0 218 51.4
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 1.5e-46 190.7 126 68.3
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 1.5e-46 190.7 126 68.3
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 9.8e-46 188.0 226 49.1
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 1.3e-42 177.6 108 77.8
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 2.3e-42 176.8 105 79.0
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 1.5e-41 174.1 177 56.5
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 1.9e-41 173.7 105 78.1
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 1.2e-40 171.0 154 53.2
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 1.2e-40 171.0 119 72.3
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 2.1e-40 170.2 262 42.7
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 4.7e-40 169.1 154 50.0
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 6.2e-40 168.7 133 63.2
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 8.0e-40 168.3 93 87.1
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 1.2e-38 164.5 106 72.6
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 6.4e-37 158.7 154 47.4
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 5.1e-34 149.1 154 46.1
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 7.8e-27 125.2 143 41.3
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 1.9e-25 120.6 80 68.8
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 1.6e-24 117.5 80 66.2
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 2.1e-24 117.1 86 60.5
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 2.1e-24 117.1 154 36.4
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 1.5e-22 110.9 96 62.5
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.3e-21 107.8 132 47.7
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 5.1e-18 95.9 71 60.6
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 4.7e-16 89.4 83 51.8
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 5.8e-14 82.4 156 32.1
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 2.5e-09 67.0 148 38.5
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 2.5e-09 67.0 61 52.5
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 3.6e-08 63.2 47 66.0
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 6.2e-08 62.4 42 71.4
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 4.5e-06 56.2 49 53.1


User provided reference genes

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