Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 1.9e-49 199.1 120 100.0
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 5.1e-39 164.5 115 75.7
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 3.1e-36 155.2 94 79.8
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 5.9e-35 151.0 93 79.6
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.3e-34 149.8 93 79.6
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 2.2e-34 149.1 87 86.2
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.8e-34 148.3 93 78.5
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 3.8e-34 148.3 93 78.5
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.5e-34 147.5 119 64.7
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 8.5e-34 147.1 93 77.4
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.1e-33 146.7 93 79.6
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.4e-33 146.4 119 63.0
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.5e-33 145.6 119 63.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 5.5e-33 144.4 119 61.3
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 7.2e-33 144.1 94 73.4
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 9.4e-33 143.7 93 74.2
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 9.4e-33 143.7 93 74.2
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 9.4e-33 143.7 93 75.3
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.2e-32 143.3 93 74.2
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.1e-32 142.5 87 75.9
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 2.1e-32 142.5 88 80.7
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.6e-32 141.7 93 71.0
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 3.6e-32 141.7 85 82.4
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 4.7e-32 141.4 93 72.0
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 6.1e-32 141.0 90 75.6
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 6.1e-32 141.0 93 72.0
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 8.0e-32 140.6 92 75.0
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 8.0e-32 140.6 88 78.4
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 8.0e-32 140.6 94 70.2
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 8.0e-32 140.6 93 71.0
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 8.0e-32 140.6 93 74.2
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.0e-31 140.2 93 72.0
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.4e-31 139.8 93 75.3
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.4e-31 139.8 93 73.1
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.8e-31 139.4 93 72.0
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.8e-31 139.4 89 77.5
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.8e-31 139.4 90 73.3
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 2.3e-31 139.0 87 78.2
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.3e-31 139.0 89 76.4
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 3.0e-31 138.7 90 73.3
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 5.2e-31 137.9 93 71.0
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 5.2e-31 137.9 93 71.0
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 5.2e-31 137.9 93 71.0
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 5.2e-31 137.9 93 71.0
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 5.2e-31 137.9 93 71.0
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 5.2e-31 137.9 93 71.0
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 5.2e-31 137.9 93 71.0
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 5.2e-31 137.9 93 71.0
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 5.2e-31 137.9 93 71.0
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 5.2e-31 137.9 90 73.3
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 5.2e-31 137.9 89 71.9
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 5.2e-31 137.9 93 76.3
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.7e-31 137.5 83 77.1
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 6.7e-31 137.5 89 74.2
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 8.8e-31 137.1 93 73.1
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.1e-30 136.7 93 74.2
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.1e-30 136.7 93 74.2
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.5e-30 136.3 93 73.1
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 2.0e-30 136.0 93 68.8
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.0e-30 136.0 93 71.0
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.0e-30 136.0 97 69.1
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.0e-30 136.0 93 68.8
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.0e-30 136.0 90 75.6
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.6e-30 135.6 93 72.0
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.6e-30 135.6 90 72.2
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.6e-30 135.6 87 71.3
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 3.3e-30 135.2 92 68.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 3.3e-30 135.2 87 70.1
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 4.4e-30 134.8 90 72.2
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 4.4e-30 134.8 93 66.7
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 4.4e-30 134.8 119 58.8
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 5.7e-30 134.4 93 68.8
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 9.7e-30 133.7 93 66.7
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.3e-29 133.3 93 68.8
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.3e-29 133.3 90 74.4
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.3e-29 133.3 93 71.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 2.2e-29 132.5 90 72.2
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.8e-29 132.1 90 67.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 2.8e-29 132.1 93 64.5
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.8e-29 131.3 93 64.5
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 4.8e-29 131.3 93 62.4
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 4.8e-29 131.3 93 68.8
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 4.8e-29 131.3 93 66.7
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 6.3e-29 131.0 89 68.5
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 6.3e-29 131.0 93 69.9
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 8.2e-29 130.6 89 68.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.1e-28 130.2 93 68.8
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.1e-28 130.2 93 64.5
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.1e-28 130.2 89 67.4
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.4e-28 129.8 92 68.5
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.4e-28 129.8 118 61.9
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.4e-28 129.8 88 69.3
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.4e-28 129.8 92 67.4
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.8e-28 129.4 82 75.6
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 3.1e-28 128.6 91 67.0
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 4.1e-28 128.3 93 64.5
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 5.3e-28 127.9 93 69.9
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 5.3e-28 127.9 93 69.9
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 7.0e-28 127.5 93 68.8
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 9.1e-28 127.1 92 64.1
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 9.1e-28 127.1 93 63.4
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.2e-27 126.7 93 65.6
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.2e-27 126.7 93 68.8
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 1.6e-27 126.3 89 65.2
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.6e-27 125.6 93 64.5
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 2.6e-27 125.6 103 65.0
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.6e-27 125.6 93 67.7
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 3.5e-27 125.2 93 67.7
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 4.5e-27 124.8 93 66.7
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 7.7e-27 124.0 119 52.9
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 7.7e-27 124.0 93 66.7
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 2.2e-26 122.5 87 69.0
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 2.2e-26 122.5 86 73.3
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 2.2e-26 122.5 96 60.4
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.8e-26 121.7 87 66.7
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 8.5e-26 120.6 89 65.2
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 8.5e-26 120.6 104 60.6
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 1.1e-25 120.2 118 55.9
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.5e-25 119.8 94 63.8
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.5e-25 119.8 94 63.8
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 1.9e-25 119.4 77 74.0
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.5e-25 119.0 76 73.7
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.2e-25 118.6 92 62.0
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 3.2e-25 118.6 88 62.5
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 5.5e-25 117.9 83 66.3
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.1e-24 115.9 77 68.8
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.1e-24 114.4 79 67.1
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.4e-23 113.2 87 62.1
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.2e-22 110.2 94 56.4
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.5e-22 109.8 120 53.3
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.5e-22 109.8 94 58.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.4e-22 108.2 86 59.3
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 2.2e-21 105.9 87 64.4
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.5e-19 98.6 89 60.7
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.7e-18 96.3 94 53.2
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 2.2e-18 95.9 89 50.6
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.5e-17 92.4 90 47.8
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.0e-15 87.0 90 46.7
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 5.7e-14 81.3 87 48.3
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 1.8e-12 76.3 45 77.8
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.4e-12 75.9 49 69.4
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 2.0e-11 72.8 76 52.6
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 5.9e-11 71.2 63 52.4
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 9.5e-09 63.9 41 68.3
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.1e-08 62.8 87 44.8


User provided reference genes

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