Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9494 Trifolium pratense HOM05D011174 ORTHO05D004093 1.8e-92 342.4 157 100.0
TPR.G15289 Trifolium pratense HOM05D000147 ORTHO05D004093 4.6e-56 221.5 105 94.3
TPR.G361 Trifolium pratense HOM05D011174 ORTHO05D004093 7.2e-33 144.4 120 55.0
TPR.G12197 Trifolium pratense HOM05D000147 ORTHO05D004093 4.7e-24 115.2 91 59.3
TPR.G16652 Trifolium pratense HOM05D011174 ORTHO05D004093 6.1e-24 114.8 122 40.2
TPR.G631 Trifolium pratense HOM05D000003 ORTHO05D000004 1.0e-23 114.0 119 40.3
TPR.G24923 Trifolium pratense HOM05D000147 ORTHO05D004093 2.3e-23 112.8 90 55.6
TPR.G34771 Trifolium pratense HOM05D000003 ORTHO05D000004 3.0e-23 112.5 118 39.8
Medtr7g036825 Medicago truncatula HOM05D000147 ORTHO05D004093 4.1e-20 102.1 120 40.8
TPR.G25709 Trifolium pratense HOM05D011174 ORTHO05D004093 9.1e-20 100.9 111 41.4
Medtr6g453270 Medicago truncatula HOM05D000147 ORTHO05D004093 5.9e-19 98.2 119 39.5
TPR.G16345 Trifolium pratense HOM05D011174 ORTHO05D014649 3.8e-18 95.5 101 41.6
TPR.G4720 Trifolium pratense HOM05D001071 ORTHO05D000932 1.1e-17 94.0 116 37.1
TPR.G34557 Trifolium pratense HOM05D011174 ORTHO05D004093 8.0e-16 87.8 102 39.2
Medtr8g028785 Medicago truncatula HOM05D000147 ORTHO05D004093 1.8e-15 86.7 122 36.9
TPR.G7449 Trifolium pratense HOM05D000003 ORTHO05D014649 1.8e-15 86.7 120 34.2
TPR.G39964 Trifolium pratense HOM05D011174 ORTHO05D004093 2.3e-15 86.3 123 31.7
TPR.G22171 Trifolium pratense HOM05D000147 ORTHO05D004093 4.0e-15 85.5 101 33.7
Medtr8g031330 Medicago truncatula HOM05D058715 ORTHO05D048961 5.2e-15 85.1 120 32.5
Medtr8g006720 Medicago truncatula HOM05D000003 ORTHO05D000004 2.8e-13 79.3 94 41.5
Medtr8g022750 Medicago truncatula HOM05D000147 ORTHO05D004093 1.1e-12 77.4 122 32.8
Medtr6g033560 Medicago truncatula HOM05D000003 ORTHO05D000004 4.1e-12 75.5 114 33.3
TPR.G35618 Trifolium pratense HOM05D000808 ORTHO05D008762 4.1e-12 75.5 94 36.2
TPR.G18929 Trifolium pratense HOM05D011174 ORTHO05D004093 9.2e-12 74.3 117 33.3
TPR.G31069 Trifolium pratense HOM05D011238 ORTHO05D004093 2.7e-11 72.8 134 29.1
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.5e-11 72.0 139 29.5
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 5.9e-11 71.6 101 31.7
Medtr6g045427 Medicago truncatula HOM05D000147 ORTHO05D004093 7.8e-11 71.2 113 30.1
TPR.G31700 Trifolium pratense HOM05D000003 ORTHO05D000004 2.3e-10 69.7 100 30.0
FvH4_3g30681 Fragaria vesca HOM05D000003 ORTHO05D000006 2.9e-10 69.3 121 30.6
Nn1g09365 Nelumbo nucifera HOM05D000003 ORTHO05D000004 3.8e-10 68.9 119 30.3
TPR.G26136 Trifolium pratense HOM05D000147 ORTHO05D001254 1.1e-09 67.4 51 54.9
Medtr2g017975 Medicago truncatula HOM05D011174 ORTHO05D004093 1.5e-09 67.0 79 39.2
RcHm_v2.0_Chr3g0481921 Rosa chinensis HOM05D000003 ORTHO05D000004 1.5e-09 67.0 123 29.3
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 1.9e-09 66.6 119 30.3
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 2.5e-09 66.2 119 30.3
SGA_v2.0_scaffold250G45022 Striga asiatica HOM05D000003 ORTHO05D000004 2.5e-09 66.2 109 32.1
Medtr2g102247 Medicago truncatula HOM05D000147 ORTHO05D004093 4.3e-09 65.5 86 37.2
QL04p022409 Quercus lobata HOM05D000003 ORTHO05D000004 2.1e-08 63.2 121 26.4
FAN14G0257 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.8e-08 62.8 119 30.3
CANSAT56G3497 Cannabis sativa HOM05D000003 ORTHO05D000167 3.6e-08 62.4 120 25.0
Lj9C481T2 Lonicera japonica HOM05D000003 ORTHO05D000004 3.6e-08 62.4 139 30.9
TPR.G14786 Trifolium pratense HOM05D000071 ORTHO05D000029 3.6e-08 62.4 98 27.6
CANSAT78G2359 Cannabis sativa HOM05D000003 ORTHO05D000167 4.7e-08 62.0 120 31.7
Manes.03G022751 Manihot esculenta HOM05D000003 ORTHO05D000004 6.1e-08 61.6 123 28.5
Medtr4g009790 Medicago truncatula HOM05D011238 ORTHO05D016329 6.1e-08 61.6 115 27.8
Aqoxy1G03355 Aquilegia oxysepala HOM05D000003 ORTHO05D000022 8.0e-08 61.2 104 33.7
Medtr8g027950 Medicago truncatula HOM05D000147 ORTHO05D004093 8.0e-08 61.2 79 36.7
RcHm_v2.0_Chr7g0243341 Rosa chinensis HOM05D000003 ORTHO05D006737 1.0e-07 60.8 103 33.0
CANSAT56G4532 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-07 60.1 120 30.8
Medtr1g103580 Medicago truncatula HOM05D000147 ORTHO05D004093 1.8e-07 60.1 84 35.7
Aqoxy4G01667 Aquilegia oxysepala HOM05D000003 ORTHO05D000022 3.0e-07 59.3 172 26.2
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 3.0e-07 59.3 114 31.6
CANSAT35G1149 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-07 59.3 114 33.3
Lj5C785T7 Lonicera japonica HOM05D008418 ORTHO05D000004 3.0e-07 59.3 121 28.9
Manes.15G185801 Manihot esculenta HOM05D000003 ORTHO05D000167 4.0e-07 58.9 136 30.1
TPR.G32297 Trifolium pratense HOM05D000003 ORTHO05D000004 4.0e-07 58.9 75 36.0
CANSAT25G2032 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-07 58.5 106 23.6
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 5.2e-07 58.5 97 28.9
Lj5P109T70 Lonicera japonica HOM05D014440 ORTHO05D000167 5.2e-07 58.5 123 27.6
EL10Ac2g04418 Beta vulgaris HOM05D000003 ORTHO05D000004 6.8e-07 58.2 121 24.8
Manes.04G110484 Manihot esculenta HOM05D000311 ORTHO05D034076 6.8e-07 58.2 100 26.0
THA.LOC104799701 Tarenaya hassleriana HOM05D000003 ORTHO05D000283 6.8e-07 58.2 125 29.6
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 8.9e-07 57.8 119 26.1
QL05p062712 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-06 57.4 124 25.8
BcaB06g27122 Brassica carinata HOM05D000003 ORTHO05D000283 1.5e-06 57.0 100 29.0
CANSAT25G0899 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-06 57.0 139 30.2
HanXRQChr05g0148651 Helianthus annuus HOM05D000003 ORTHO05D000004 1.5e-06 57.0 126 29.4
CANSAT54G2709 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-06 56.6 98 30.6
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-06 56.6 92 31.5
FvH4_1g26332 Fragaria vesca HOM05D000003 ORTHO05D000004 2.0e-06 56.6 100 31.0
TWI56G1451 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 2.0e-06 56.6 121 25.6
Atru.chr6.65 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-06 56.2 120 25.8
Aqoxy3G02146 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.6e-06 56.2 163 23.9
CANSAT21G0177 Cannabis sativa HOM05D000003 ORTHO05D000167 2.6e-06 56.2 152 26.3
Lj2P267T18 Lonicera japonica HOM05D000003 ORTHO05D000167 2.6e-06 56.2 102 35.3
Manes.06G043166 Manihot esculenta HOM05D000003 ORTHO05D000004 2.6e-06 56.2 100 26.0
SHI45994 Sapria himalayana HOM05D000003 ORTHO05D000004 2.6e-06 56.2 121 24.8
BcaC03g15774 Brassica carinata HOM05D001239 ORTHO05D000925 3.4e-06 55.8 121 28.9
CANSAT25G2616 Cannabis sativa HOM05D000003 ORTHO05D000167 3.4e-06 55.8 111 27.9
CANSAT56G2889 Cannabis sativa HOM05D000003 ORTHO05D000004 3.4e-06 55.8 98 29.6
CANSAT64G0950 Cannabis sativa HOM05D000003 ORTHO05D000167 3.4e-06 55.8 121 25.6
Lj1C222T2 Lonicera japonica HOM05D000003 ORTHO05D000004 3.4e-06 55.8 142 25.4
PSO478G5116 Papaver somniferum HOM05D007979 ORTHO05D008897 3.4e-06 55.8 125 29.6
CANSAT25G2525 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-06 55.5 120 27.5
CANSAT56G1552 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-06 55.5 120 26.7
Aqoxy7G02241 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.8e-06 55.1 163 23.9
EL10Ac4g08380 Beta vulgaris HOM05D000003 ORTHO05D000004 5.8e-06 55.1 121 24.8
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 5.8e-06 55.1 121 24.0
Lj5P296T4 Lonicera japonica HOM05D000003 ORTHO05D000004 5.8e-06 55.1 122 24.6
Nn6g35689 Nelumbo nucifera HOM05D000003 ORTHO05D000004 5.8e-06 55.1 103 28.2
RcHm_v2.0_Chr1g0346251 Rosa chinensis HOM05D000003 ORTHO05D000004 5.8e-06 55.1 151 30.5
CANSAT80G1560 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-06 54.7 104 29.8
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 7.5e-06 54.7 100 32.0
Atru.chr1.1181 Acer truncatum HOM05D000003 ORTHO05D000167 9.8e-06 54.3 118 25.4
Aqoxy2G01587 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.8e-06 54.3 116 29.3
EL10Ac6g14728 Beta vulgaris HOM05D000003 ORTHO05D000283 9.8e-06 54.3 109 29.4
BcaB01g03708 Brassica carinata HOM05D001239 ORTHO05D000925 9.8e-06 54.3 125 28.8
CANSAT54G2762 Cannabis sativa HOM05D000003 ORTHO05D000004 9.8e-06 54.3 121 24.0
CANSAT78G2528 Cannabis sativa HOM05D000003 ORTHO05D000167 9.8e-06 54.3 117 29.1
Lj6P349T18 Lonicera japonica HOM05D000003 ORTHO05D000004 9.8e-06 54.3 120 25.0
PSO079G0068 Papaver somniferum HOM05D000003 ORTHO05D000004 9.8e-06 54.3 127 28.3
PSO349G0072 Papaver somniferum HOM05D003407 ORTHO05D001026 9.8e-06 54.3 106 33.0
Sp6g38460 Schrenkiella parvula HOM05D000003 ORTHO05D009772 9.8e-06 54.3 142 27.5
SGA_v2.0_scaffold279G46783 Striga asiatica HOM05D005209 ORTHO05D006188 9.8e-06 54.3 111 32.4
TPR.G16097 Trifolium pratense HOM05D011174 ORTHO05D004093 9.8e-06 54.3 61 36.1


User provided reference genes

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