Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 3.0e-207 724.9 365 100.0
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 1.4e-151 540.0 347 76.7
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 2.3e-151 539.3 347 76.1
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 2.0e-150 536.2 347 76.4
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 3.7e-149 531.9 352 75.3
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 3.2e-148 528.9 354 74.6
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 3.2e-148 528.9 352 74.4
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 2.0e-147 526.2 327 79.5
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.7e-147 525.8 351 74.1
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 3.5e-147 525.4 351 73.8
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 7.8e-147 524.2 310 82.6
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 7.8e-147 524.2 335 74.3
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 1.0e-146 523.9 347 74.1
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 3.9e-146 521.9 357 73.9
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 2.5e-145 519.2 350 74.3
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 5.6e-145 518.1 310 81.3
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 9.5e-145 517.3 346 74.0
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 1.6e-144 516.5 321 78.2
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 1.6e-144 516.5 356 73.0
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.1e-144 516.2 346 74.0
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 2.8e-144 515.8 346 74.0
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 6.2e-144 514.6 344 74.1
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 6.2e-144 514.6 346 71.7
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 6.2e-144 514.6 344 73.3
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 1.4e-143 513.5 361 71.5
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 1.4e-143 513.5 351 73.2
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 1.8e-143 513.1 310 80.3
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 2.3e-143 512.7 321 77.6
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 3.1e-143 512.3 314 79.6
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 5.2e-143 511.5 340 73.8
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 5.2e-143 511.5 340 72.6
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 8.9e-143 510.8 320 75.9
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 2.6e-142 509.2 304 79.6
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.4e-142 508.4 355 70.7
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 4.4e-142 508.4 357 68.9
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 4.4e-142 508.4 347 73.2
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 4.4e-142 508.4 314 78.7
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 5.8e-142 508.1 304 78.6
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 9.8e-142 507.3 308 79.9
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 9.8e-142 507.3 321 76.9
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 9.8e-142 507.3 342 72.8
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.3e-141 506.9 297 81.5
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 1.7e-141 506.5 362 70.7
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.7e-141 506.5 308 79.9
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 1.7e-141 506.5 314 79.0
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 2.2e-141 506.1 352 72.2
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 2.2e-141 506.1 333 73.6
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 2.9e-141 505.8 310 79.7
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 2.9e-141 505.8 312 77.2
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 2.9e-141 505.8 346 73.1
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 3.7e-141 505.4 352 71.3
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 6.4e-141 504.6 357 70.9
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 8.3e-141 504.2 303 79.2
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.1e-140 503.8 308 79.5
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 2.4e-140 502.7 367 68.4
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 3.2e-140 502.3 294 80.6
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 4.1e-140 501.9 357 70.9
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 5.4e-140 501.5 355 71.0
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 7.1e-140 501.1 337 72.7
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 7.1e-140 501.1 359 70.8
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 7.1e-140 501.1 359 70.8
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 9.2e-140 500.7 349 71.6
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.6e-139 500.0 334 74.0
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.6e-139 500.0 334 74.0
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 6.0e-139 498.0 334 73.4
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 6.0e-139 498.0 351 70.1
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 7.8e-139 497.7 360 68.6
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 1.0e-138 497.3 314 77.1
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.3e-138 496.9 317 77.0
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 2.3e-138 496.1 331 72.2
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 3.0e-138 495.7 340 72.6
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.9e-138 495.4 334 73.4
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 5.1e-138 495.0 338 72.2
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 5.1e-138 495.0 353 69.7
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 5.1e-138 495.0 345 70.7
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 5.1e-138 495.0 339 69.9
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 5.1e-138 495.0 345 70.7
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 8.6e-138 494.2 309 76.7
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 1.1e-137 493.8 330 75.2
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.5e-137 493.4 334 73.1
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 1.5e-137 493.4 365 67.7
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 1.9e-137 493.0 363 67.8
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.5e-137 492.7 338 70.7
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 4.3e-137 491.9 308 76.6
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 4.3e-137 491.9 297 78.8
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 4.3e-137 491.9 308 76.6
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 4.3e-137 491.9 308 76.6
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 4.3e-137 491.9 297 78.8
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 4.3e-137 491.9 311 77.8
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 5.6e-137 491.5 322 75.2
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 5.6e-137 491.5 353 69.7
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 1.2e-136 490.3 358 67.9
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 1.2e-136 490.3 359 68.2
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 1.2e-136 490.3 359 68.0
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 1.6e-136 490.0 353 67.7
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.1e-136 489.6 306 76.5
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 2.1e-136 489.6 365 67.9
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 2.1e-136 489.6 352 69.6
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 2.8e-136 489.2 352 69.3
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.6e-136 488.8 310 75.2
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 3.6e-136 488.8 343 68.5
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 3.6e-136 488.8 352 69.3
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 4.7e-136 488.4 359 68.5
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 1.1e-135 487.3 351 69.8
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 2.3e-135 486.1 341 69.2
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 2.3e-135 486.1 332 72.9
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 4.0e-135 485.3 329 71.1
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 6.8e-135 484.6 353 68.6
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 1.2e-134 483.8 353 68.6
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.2e-134 483.8 365 67.1
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 2.6e-134 482.6 305 75.7
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 3.4e-134 482.3 391 63.7
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 3.4e-134 482.3 315 72.1
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 4.4e-134 481.9 344 70.3
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 4.4e-134 481.9 350 68.0
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 5.8e-134 481.5 310 74.8
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 5.8e-134 481.5 361 67.9
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 2.9e-133 479.2 292 78.8
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 2.9e-133 479.2 299 75.3
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 5.4e-132 474.9 335 69.3
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 2.1e-128 463.0 423 57.9
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 2.1e-128 463.0 344 67.4
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 3.6e-128 462.2 307 72.6
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 1.6e-123 446.8 310 69.0
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.1e-121 440.7 304 72.0
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 1.1e-121 440.7 379 60.9
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 4.3e-121 438.7 267 76.0
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 2.4e-119 433.0 280 73.2
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 3.1e-119 432.6 318 63.8
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 5.3e-119 431.8 274 77.0
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 4.9e-117 425.2 352 63.9
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 1.4e-116 423.7 361 61.2
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 5.4e-116 421.8 308 68.8
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 9.3e-116 421.0 344 58.4
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.5e-115 419.1 305 64.6
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 3.5e-115 419.1 292 71.9
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 3.9e-114 415.6 308 63.3
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.5e-113 413.7 351 58.1
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.9e-113 413.3 249 79.9
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 6.2e-112 408.3 338 62.1
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 5.8e-110 401.7 348 62.4
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 3.0e-106 389.4 328 57.6
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 3.0e-106 389.4 382 56.3
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 7.4e-105 384.8 221 82.4
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.6e-104 383.6 329 57.4
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.2e-101 373.2 336 57.4
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 2.5e-100 369.8 345 55.4
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.8e-95 353.6 310 60.3
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 4.1e-95 352.4 231 74.5
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 8.5e-85 318.2 295 52.9
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 7.9e-83 311.6 220 66.4
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 2.6e-78 296.6 247 64.8
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 1.7e-64 250.8 150 78.7
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 2.5e-60 236.9 329 45.6
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 1.1e-55 221.5 175 62.3
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 3.1e-47 193.4 136 66.9
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 4.5e-46 189.5 174 60.9
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 1.7e-32 144.4 122 65.6
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 6.6e-29 132.5 96 65.6
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 5.2e-26 122.9 280 30.7
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 1.4e-23 114.8 331 28.1
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 3.3e-20 103.6 330 26.4
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 2.1e-19 100.9 65 70.8
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 6.8e-18 95.9 244 33.6
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 3.7e-16 90.1 59 74.6
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 3.5e-14 83.6 379 23.7
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 1.0e-13 82.0 68 58.8
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 1.0e-13 82.0 68 58.8
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 1.3e-13 81.6 71 62.0
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 2.3e-13 80.9 68 58.8
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 1.2e-11 75.1 108 37.0
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 9.9e-09 65.5 33 84.8
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 1.2e-06 58.5 39 66.7
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 1.2e-06 58.5 39 66.7
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 2.1e-06 57.8 39 64.1
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 3.5e-06 57.0 82 42.7
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 4.6e-06 56.6 35 74.3


User provided reference genes

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