Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 5.9e-294 1013.4 507 100.0
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 8.3e-264 913.3 509 90.0
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 4.4e-257 891.0 507 88.4
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.3e-237 825.5 508 80.5
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 2.5e-236 822.0 508 80.7
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.8e-234 815.8 499 82.8
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 2.7e-230 802.0 511 78.5
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.6e-228 794.3 511 78.1
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.2e-227 793.1 533 75.4
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 6.8e-226 787.3 536 73.3
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 6.4e-224 780.8 517 74.9
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 4.2e-223 778.1 519 75.5
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 6.0e-222 774.2 519 76.1
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 1.9e-220 769.2 545 72.1
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 8.1e-219 763.8 518 75.3
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 1.1e-218 763.5 518 75.1
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 2.6e-217 758.8 519 72.8
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 4.4e-217 758.1 542 72.0
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 4.9e-216 754.6 538 72.1
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.1e-215 753.4 538 71.6
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.1e-215 753.4 522 73.8
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 1.9e-215 752.7 530 73.0
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.1e-212 743.4 543 70.5
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 2.8e-211 738.8 478 76.4
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 3.6e-211 738.4 455 78.9
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.8e-210 736.1 530 69.8
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 2.4e-210 735.7 514 72.6
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 4.0e-210 734.9 519 73.0
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 6.9e-210 734.2 478 75.5
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 9.0e-210 733.8 506 72.9
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 2.9e-208 728.8 421 81.5
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 2.4e-207 725.7 513 71.2
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 5.4e-207 724.5 487 74.3
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.3e-205 719.9 543 68.9
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.8e-205 719.5 442 78.1
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 1.1e-204 716.8 530 68.7
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 3.3e-204 715.3 529 69.2
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 4.3e-204 714.9 481 74.2
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 7.4e-204 714.1 460 75.2
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 7.4e-204 714.1 518 71.0
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 6.2e-203 711.1 504 71.8
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 4.0e-202 708.4 483 72.0
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 4.0e-202 708.4 483 72.0
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 6.9e-202 707.6 480 72.3
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 6.9e-202 707.6 487 72.9
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 9.0e-202 707.2 497 69.4
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 9.0e-202 707.2 497 69.4
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 2.6e-201 705.7 484 71.7
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 2.6e-201 705.7 484 71.7
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 3.4e-201 705.3 497 69.2
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 4.5e-201 704.9 498 71.3
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 7.6e-201 704.1 498 71.3
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 1.0e-200 703.7 498 71.3
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 2.2e-200 702.6 480 72.1
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 2.9e-200 702.2 489 71.6
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 2.9e-200 702.2 534 67.4
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 3.8e-200 701.8 424 78.1
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 4.9e-200 701.4 513 69.4
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.4e-199 699.9 492 73.2
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.9e-199 699.5 436 77.8
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 4.2e-199 698.4 490 71.6
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.2e-198 696.8 489 70.3
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.2e-198 696.8 489 70.3
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.6e-198 696.4 567 66.3
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.6e-198 696.4 491 69.9
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 2.1e-198 696.0 458 74.7
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 3.5e-198 695.3 491 70.1
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 6.0e-198 694.5 498 69.5
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 7.9e-198 694.1 481 70.7
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 7.9e-198 694.1 502 69.3
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 1.3e-197 693.3 499 69.3
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 1.3e-197 693.3 476 71.6
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 2.3e-197 692.6 494 70.9
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.3e-197 692.6 507 68.4
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 2.3e-197 692.6 497 69.2
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 6.7e-197 691.0 490 69.0
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 8.7e-197 690.6 420 78.1
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.5e-196 689.9 497 69.4
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 2.5e-196 689.1 512 68.9
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 2.5e-196 689.1 461 72.5
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.6e-195 686.4 500 68.8
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 1.4e-194 683.3 486 70.2
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 2.4e-194 682.6 500 68.8
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 3.1e-194 682.2 463 73.4
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.1e-194 682.2 394 88.3
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.4e-193 678.7 514 69.8
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.3e-192 676.8 514 69.6
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.2e-192 676.0 429 73.9
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.9e-192 675.6 516 64.9
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 6.5e-192 674.5 462 71.4
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 6.5e-192 674.5 503 70.0
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.4e-191 673.3 486 67.9
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.5e-191 671.4 512 68.9
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 5.5e-191 671.4 486 67.3
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 2.7e-190 669.1 578 63.7
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 4.6e-190 668.3 521 66.4
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 6.1e-190 667.9 515 67.2
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.0e-189 665.6 553 64.0
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.7e-189 664.1 513 69.4
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.1e-188 663.7 503 70.0
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.5e-188 662.5 516 65.5
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 5.7e-188 661.4 421 74.3
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 6.3e-187 657.9 584 59.9
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.2e-185 653.7 418 77.0
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 4.6e-182 641.7 418 72.7
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 7.9e-182 641.0 426 74.6
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 2.3e-181 639.4 538 64.5
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 9.1e-178 627.5 508 64.4
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 3.4e-177 625.5 430 70.9
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 4.5e-177 625.2 497 67.4
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.9e-176 622.5 462 70.3
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 5.5e-175 618.2 454 69.2
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 6.1e-174 614.8 529 61.6
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 6.7e-173 611.3 524 62.8
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 2.8e-171 605.9 422 67.1
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 5.9e-169 598.2 495 58.6
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 7.2e-167 591.3 424 65.8
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.2e-166 590.5 515 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.6e-166 589.0 476 61.6
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 6.1e-166 588.2 480 65.0
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 1.8e-165 586.6 515 61.4
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 2.3e-165 586.3 366 73.8
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 6.7e-165 584.7 433 64.9
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.4e-164 581.3 529 60.7
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 2.8e-163 579.3 352 78.4
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.4e-162 577.0 564 57.8
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.6e-161 573.5 418 67.5
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 2.6e-161 572.8 362 78.7
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 1.2e-158 563.9 519 58.4
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.2e-158 563.9 427 66.0
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 4.0e-157 558.9 548 57.3
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.1e-154 550.8 433 63.3
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 2.5e-151 539.7 368 70.7
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.8e-147 526.2 451 62.7
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 1.6e-145 520.4 529 55.8
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 3.3e-143 512.7 349 72.8
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.8e-142 509.6 400 64.2
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 1.4e-141 507.3 354 67.8
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 3.0e-141 506.1 449 60.6
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 4.0e-141 505.8 397 67.8
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 5.2e-141 505.4 423 63.8
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 2.0e-140 503.4 480 55.0
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.5e-140 501.5 355 71.5
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 2.3e-136 490.0 372 70.2
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 5.8e-132 475.3 434 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 5.6e-127 458.8 352 63.9
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 3.9e-120 436.0 388 61.6
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 7.6e-116 421.8 278 73.7
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 8.1e-102 375.2 210 83.3
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 3.5e-97 359.8 436 45.4
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.1e-80 302.8 290 58.3
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.5e-79 300.4 277 59.2
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 1.5e-76 291.2 258 64.0
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 6.1e-73 279.3 146 85.6
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 1.3e-67 261.5 237 60.8
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.5e-66 257.3 155 80.6
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.5e-63 248.1 419 40.8
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.0e-63 247.7 193 59.6
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 1.7e-62 244.6 404 36.1
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 8.2e-62 242.3 166 62.7
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.7e-54 218.0 172 67.4
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.2e-52 211.8 540 30.9
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.7e-41 174.1 101 77.2
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.6e-20 105.1 250 30.4
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.7e-19 101.7 49 91.8
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 3.9e-19 100.5 181 32.6
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 2.1e-17 94.7 53 81.1
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 2.3e-16 91.3 160 43.1
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 5.2e-16 90.1 51 78.4
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 3.0e-11 74.3 63 54.0
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 3.3e-10 70.9 106 39.6
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.3e-10 69.7 39 82.1
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 4.0e-08 63.9 66 56.1
Lalb_Chr11g0074511 Lupinus albus HOM05D004042 ORTHO05D004552 5.8e-07 60.1 118 40.7
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 2.2e-06 58.2 50 62.0


User provided reference genes

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