Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 2.0e-86 322.4 166 100.0
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 1.3e-69 266.5 148 92.6
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 3.0e-69 265.4 148 91.9
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 3.6e-67 258.5 148 87.8
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 6.2e-67 257.7 148 88.5
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 6.2e-67 257.7 154 84.4
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 8.9e-66 253.8 148 86.5
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 1.7e-64 249.6 148 86.5
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 4.6e-62 241.5 148 81.8
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 2.3e-61 239.2 148 79.1
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 5.1e-61 238.0 148 79.1
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 5.1e-61 238.0 148 79.7
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 8.6e-61 237.3 148 79.1
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 4.3e-60 235.0 148 78.4
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 7.3e-60 234.2 149 77.9
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 1.6e-59 233.0 148 76.4
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 1.6e-59 233.0 148 75.7
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 3.6e-59 231.9 148 75.7
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 3.6e-59 231.9 148 77.7
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 4.7e-59 231.5 148 73.6
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 8.1e-59 230.7 168 70.8
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 8.1e-59 230.7 151 74.2
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.8e-58 229.6 148 75.7
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 2.4e-58 229.2 148 75.7
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 8.9e-58 227.3 149 75.8
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 1.5e-57 226.5 149 75.8
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 2.0e-57 226.1 148 73.6
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 2.0e-57 226.1 148 73.6
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 2.6e-57 225.7 168 69.0
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 5.8e-57 224.6 148 75.0
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 5.8e-57 224.6 148 75.7
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 5.8e-57 224.6 148 73.0
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 5.8e-57 224.6 222 57.7
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 7.6e-57 224.2 148 74.3
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 7.6e-57 224.2 148 74.3
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 9.9e-57 223.8 148 73.0
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 1.3e-56 223.4 150 74.0
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.3e-56 223.4 148 72.3
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.3e-56 223.4 148 73.6
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 1.7e-56 223.0 148 73.6
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 3.8e-56 221.9 148 72.3
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 6.4e-56 221.1 148 75.0
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 1.1e-55 220.3 148 73.6
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 1.4e-55 219.9 148 73.0
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.4e-55 219.9 148 70.9
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 1.9e-55 219.5 149 72.5
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 1.9e-55 219.5 149 73.2
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 3.2e-55 218.8 148 72.3
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 3.2e-55 218.8 148 71.6
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 7.1e-55 217.6 148 70.9
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 9.3e-55 217.2 150 70.7
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 1.2e-54 216.9 148 70.9
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.2e-54 216.9 148 70.9
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 1.2e-54 216.9 148 72.3
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 2.1e-54 216.1 148 73.0
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 2.1e-54 216.1 149 69.8
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 2.1e-54 216.1 149 70.5
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 2.7e-54 215.7 149 72.5
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 3.5e-54 215.3 148 71.6
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 3.5e-54 215.3 149 70.5
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 4.6e-54 214.9 148 70.9
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 4.6e-54 214.9 148 71.6
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 6.0e-54 214.5 149 69.1
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 6.0e-54 214.5 149 69.1
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 7.8e-54 214.2 149 69.8
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 1.3e-53 213.4 148 70.9
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 2.3e-53 212.6 148 70.9
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 3.0e-53 212.2 148 70.3
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 3.9e-53 211.8 148 70.3
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 5.1e-53 211.5 148 67.6
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 5.1e-53 211.5 148 70.3
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 8.7e-53 210.7 148 70.3
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 8.7e-53 210.7 148 69.6
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 8.7e-53 210.7 148 69.6
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 1.5e-52 209.9 148 70.3
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 2.5e-52 209.1 148 70.3
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 3.3e-52 208.8 182 59.9
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 4.3e-52 208.4 148 69.6
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 5.6e-52 208.0 149 67.8
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 7.3e-52 207.6 149 70.5
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 1.6e-51 206.5 148 68.9
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 1.6e-51 206.5 148 68.9
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 1.6e-51 206.5 176 63.1
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 2.1e-51 206.1 148 68.9
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 8.1e-51 204.1 151 67.5
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 8.1e-51 204.1 148 67.6
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 1.8e-50 203.0 149 68.5
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 4.0e-50 201.8 167 63.5
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 9.0e-50 200.7 167 62.9
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 2.6e-49 199.1 129 72.9
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 3.4e-49 198.7 148 64.9
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 6.4e-48 194.5 148 64.9
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 1.0e-45 187.2 148 64.2
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 4.3e-44 181.8 147 60.5
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 4.3e-44 181.8 152 62.5
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 2.8e-43 179.1 147 61.2
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 3.6e-43 178.7 148 62.8
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 3.6e-43 178.7 152 59.2
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 5.3e-42 174.9 146 57.5
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 2.9e-40 169.1 148 62.2
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 2.9e-40 169.1 155 54.8
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 9.3e-39 164.1 141 63.8
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 1.2e-38 163.7 148 60.1
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.5e-36 156.8 120 60.8
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 9.0e-34 147.5 95 72.6
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 2.0e-33 146.4 95 70.5
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.3e-32 143.7 95 70.5
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 3.8e-32 142.1 106 66.0
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 4.9e-32 141.7 148 48.0
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 1.1e-23 114.0 141 41.8
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 5.5e-23 111.7 141 41.1
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 9.3e-23 110.9 141 40.4
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.6e-22 110.2 148 39.9
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 7.9e-22 107.8 141 38.3
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.2e-17 94.0 158 36.7
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 1.9e-15 86.7 54 77.8
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.2e-14 84.0 55 74.5
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 1.8e-10 70.1 48 70.8
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 1.8e-10 70.1 48 70.8
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 2.4e-10 69.7 55 65.5
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 6.9e-10 68.2 52 61.5
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.5e-09 67.0 48 68.8
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 1.5e-09 67.0 52 61.5
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 2.6e-09 66.2 52 59.6
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 3.4e-09 65.9 45 73.3
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 7.2e-07 58.2 46 69.6
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 9.4e-07 57.8 52 59.6


User provided reference genes

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