Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 0.0e+00 2476.4 1238 100.0
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 0.0e+00 2010.3 1196 84.1
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 0.0e+00 1577.0 1192 68.3
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 0.0e+00 1437.2 1203 62.3
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 0.0e+00 1357.4 1200 59.9
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 0.0e+00 1356.7 1200 60.0
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 0.0e+00 1191.8 946 65.3
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 2.5e-266 922.9 1222 44.6
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 1.6e-260 903.7 1218 44.7
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 9.1e-256 887.9 1250 42.6
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 2.2e-254 883.2 1229 44.2
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 1.6e-252 877.1 1211 42.7
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 1.1e-250 870.9 1221 43.3
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 3.3e-250 869.4 1233 43.4
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 5.2e-243 845.5 1288 41.5
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 9.1e-240 834.7 1221 41.1
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 4.4e-234 815.8 1246 41.1
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 4.9e-233 812.4 1227 41.2
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 1.5e-226 790.8 1222 40.9
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 3.2e-224 783.1 1206 42.0
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 9.2e-224 781.6 1072 44.4
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 2.0e-223 780.4 1245 39.4
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 5.9e-223 778.9 1225 39.8
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.9e-221 773.9 1224 40.2
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 1.3e-217 761.1 1264 39.2
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 1.4e-216 757.7 1252 39.6
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 1.4e-216 757.7 1229 38.6
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 3.9e-214 749.6 1218 40.5
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 8.6e-214 748.4 1251 39.4
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 2.5e-213 746.9 1231 38.3
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 4.9e-209 732.6 1224 39.1
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 8.1e-204 715.3 1238 39.3
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 3.7e-201 706.4 1233 37.2
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 1.8e-195 687.6 1202 38.9
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 2.4e-195 687.2 1248 36.8
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 4.0e-195 686.4 1178 38.1
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.2e-194 684.9 1202 38.9
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 2.2e-193 680.6 1224 37.4
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 2.1e-191 674.1 1171 36.9
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 1.3e-188 664.8 1232 35.7
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 1.7e-185 654.4 1238 37.5
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 2.9e-185 653.7 1261 35.4
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 7.1e-184 649.0 1218 35.1
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.2e-183 648.3 1201 37.8
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 6.0e-183 646.0 1233 36.1
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 4.8e-180 636.3 1235 36.8
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 5.3e-179 632.9 1228 35.4
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 9.0e-179 632.1 1231 36.3
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 5.8e-178 629.4 1228 34.9
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 3.2e-176 623.6 1225 35.9
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 6.0e-175 619.4 1244 35.5
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 8.7e-174 615.5 1213 34.2
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 9.0e-171 605.5 1164 35.7
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 4.5e-162 576.6 1209 34.1
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 7.6e-162 575.9 1235 33.7
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 1.4e-160 571.6 1191 33.1
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 2.7e-159 567.4 1214 33.7
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 2.6e-154 550.8 1214 31.9
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 1.7e-153 548.1 1084 35.4
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 2.9e-153 547.4 1204 32.1
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 4.2e-152 543.5 1231 32.6
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 6.1e-151 539.7 1199 32.7
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 6.1e-151 539.7 1234 33.5
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 8.8e-150 535.8 1230 32.6
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 2.5e-149 534.3 1479 29.5
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 4.8e-148 530.0 1214 32.6
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 4.8e-148 530.0 1221 32.8
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 6.3e-148 529.6 1230 33.1
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 1.1e-147 528.9 1203 32.9
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 1.4e-147 528.5 1219 32.7
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 5.3e-147 526.6 983 35.2
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 2.6e-146 524.2 1225 32.7
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 4.5e-146 523.5 1218 32.6
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 7.7e-146 522.7 830 40.6
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 1.2e-143 515.4 1218 32.4
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 2.1e-143 514.6 1240 31.8
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 3.6e-143 513.8 715 43.5
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 1.2e-138 498.8 1038 35.7
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.1e-133 482.3 1035 33.9
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 7.2e-128 463.0 940 34.3
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 9.4e-128 462.6 916 35.2
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 4.8e-124 450.3 407 60.2
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 8.5e-121 439.5 1144 30.7
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 1.9e-120 438.3 1065 32.5
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 3.3e-104 384.4 1197 28.8
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 9.5e-104 382.9 290 67.9
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 1.1e-96 359.4 1211 27.5
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 5.2e-94 350.5 642 37.4
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 6.8e-94 350.1 813 33.5
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 1.9e-91 342.0 412 46.4
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 4.6e-90 337.4 256 68.4
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.6e-82 312.4 350 50.0
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 2.4e-78 298.5 1204 25.2
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.0e-65 255.0 264 51.5
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.5e-64 251.9 375 41.9
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 9.6e-64 250.0 204 61.3
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 1.6e-63 249.2 239 51.0
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 3.6e-63 248.1 146 82.9
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 7.1e-59 233.8 269 44.2
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.8e-54 219.2 236 49.6
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.8e-54 219.2 610 28.9
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 2.1e-50 205.7 268 46.3
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 2.7e-42 178.7 289 35.3
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 7.9e-42 177.2 195 46.7
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.9e-40 172.6 208 45.2
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.3e-40 171.8 200 47.5
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 5.7e-40 171.0 487 28.1
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 2.9e-36 158.7 462 29.9
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 4.6e-34 151.4 129 59.7
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 4.4e-32 144.8 166 40.4
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 7.4e-32 144.1 124 62.9
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 6.3e-31 141.0 466 29.8
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 5.3e-30 137.9 186 40.9
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 6.5e-28 131.0 422 28.7
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 2.3e-25 122.5 469 26.7
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 8.8e-25 120.6 211 37.4
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 2.8e-23 115.5 205 33.7
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.6e-21 109.8 197 34.5
Psat2g076400 Pisum sativum HOM05D002050 ORTHO05D001949 2.2e-20 105.9 60 83.3
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 3.2e-19 102.1 200 37.0
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 2.6e-16 92.4 56 76.8
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 4.4e-16 91.7 597 22.4
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 2.4e-14 85.9 267 28.5
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 4.1e-14 85.1 51 78.4
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.6e-13 83.2 241 29.5
Lalb_Chr04g0264221 Lupinus albus HOM05D006182 ORTHO05D007236 1.7e-12 79.7 42 78.6
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 7.2e-11 74.3 213 30.5


User provided reference genes

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