Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 4.4e-14 80.5 54 100.0
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 4.4e-14 80.5 54 100.0
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 4.4e-14 80.5 54 100.0
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 9.2e-12 72.8 54 92.6
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.7e-10 68.6 54 90.7
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 2.9e-10 67.8 53 90.6
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 3.9e-10 67.4 54 88.9
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 3.9e-10 67.4 54 88.9
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 3.9e-10 67.4 54 88.9
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 6.6e-10 66.6 53 90.6
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 8.6e-10 66.2 54 87.0
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 8.6e-10 66.2 54 87.0
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.5e-09 65.5 53 71.7
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 2.5e-09 64.7 53 69.8
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 2.5e-09 64.7 53 69.8
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 3.3e-09 64.3 53 86.8
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 3.3e-09 64.3 53 86.8
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 4.3e-09 63.9 53 86.8
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 4.3e-09 63.9 53 84.9
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 4.3e-09 63.9 53 86.8
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 5.6e-09 63.5 53 86.8
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 5.6e-09 63.5 53 86.8
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 5.6e-09 63.5 53 86.8
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 5.6e-09 63.5 53 86.8
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 5.6e-09 63.5 52 86.5
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 5.6e-09 63.5 52 86.5
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 7.3e-09 63.2 53 84.9
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 7.3e-09 63.2 53 84.9
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 7.3e-09 63.2 53 67.9
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 9.5e-09 62.8 53 84.9
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 9.5e-09 62.8 53 84.9
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 9.5e-09 62.8 53 84.9
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.2e-08 62.4 53 84.9
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.2e-08 62.4 53 84.9
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.2e-08 62.4 53 84.9
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.2e-08 62.4 53 84.9
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.2e-08 62.4 53 84.9
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.2e-08 62.4 53 84.9
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.2e-08 62.4 53 84.9
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.2e-08 62.4 53 84.9
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.2e-08 62.4 53 84.9
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 1.2e-08 62.4 53 84.9
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 2.1e-08 61.6 52 63.5
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 2.1e-08 61.6 53 84.9
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 2.8e-08 61.2 53 84.9
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.6e-08 60.8 53 66.0
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 4.7e-08 60.5 53 83.0
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 6.1e-08 60.1 53 66.0
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 6.1e-08 60.1 54 61.1
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 8.0e-08 59.7 53 64.2
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.0e-07 59.3 53 64.2
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.4e-07 58.9 53 64.2
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.4e-07 58.9 53 64.2
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.4e-07 58.9 53 79.2
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.4e-07 58.9 53 81.1
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.8e-07 58.5 53 64.2
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.8e-07 58.5 53 64.2
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.8e-07 58.5 53 64.2
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.8e-07 58.5 53 64.2
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 2.3e-07 58.2 52 80.8
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.3e-07 58.2 53 62.3
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 2.3e-07 58.2 54 61.1
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 2.3e-07 58.2 54 61.1
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 2.3e-07 58.2 54 61.1
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 6.8e-07 56.6 53 77.4
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 6.8e-07 56.6 53 69.8
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 6.8e-07 56.6 53 69.8
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 8.9e-07 56.2 53 62.3
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 8.9e-07 56.2 53 62.3
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.0e-06 55.1 53 79.2
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.6e-06 54.7 53 60.4
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 2.6e-06 54.7 54 63.0
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.6e-06 54.7 53 60.4
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 4.4e-06 53.9 53 75.5
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 5.8e-06 53.5 53 73.6
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 7.5e-06 53.1 53 58.5
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 7.5e-06 53.1 47 63.8
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 7.5e-06 53.1 59 71.2
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 9.8e-06 52.8 52 76.9
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 9.8e-06 52.8 53 73.6
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 9.8e-06 52.8 50 82.0
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 9.8e-06 52.8 54 72.2


User provided reference genes

Program Settings