Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 5.5e-248 860.5 435 100.0
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 1.2e-234 816.2 435 94.0
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 1.0e-233 813.1 431 94.4
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 1.1e-221 773.1 445 87.6
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 2.2e-217 758.8 435 87.8
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 4.7e-215 751.1 442 87.1
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 8.5e-209 730.3 436 84.4
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 2.4e-203 712.2 388 91.0
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 6.5e-201 704.1 433 79.2
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 2.5e-200 702.2 460 76.5
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 9.4e-200 700.3 432 80.1
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 6.8e-198 694.1 443 77.2
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 7.5e-197 690.6 435 77.5
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 3.7e-196 688.3 429 77.6
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 1.1e-195 686.8 433 78.5
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 9.1e-195 683.7 431 77.7
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.6e-194 682.9 418 78.2
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 3.5e-194 681.8 418 78.0
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 1.0e-193 680.2 433 75.3
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 2.3e-193 679.1 442 75.6
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 2.9e-193 678.7 427 77.3
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 1.9e-192 676.0 449 74.8
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 6.1e-191 671.0 431 75.9
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 2.3e-190 669.1 429 76.5
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 8.9e-190 667.2 431 76.3
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 3.4e-189 665.2 405 79.5
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 4.9e-188 661.4 430 76.0
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 6.3e-188 661.0 649 57.5
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 8.3e-188 660.6 433 74.4
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 3.5e-186 655.2 420 77.1
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 1.0e-185 653.7 435 75.2
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 1.7e-185 652.9 418 74.9
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 2.3e-185 652.5 425 73.2
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 8.6e-185 650.6 418 75.4
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 1.9e-184 649.4 433 72.3
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 2.5e-184 649.0 421 73.9
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 2.1e-183 646.0 431 73.5
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 3.6e-183 645.2 405 77.3
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 1.8e-182 642.9 416 75.0
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 2.2e-180 636.0 427 73.8
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 2.2e-180 636.0 427 73.8
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 2.9e-180 635.6 425 72.2
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 3.7e-180 635.2 433 74.4
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 7.0e-179 630.9 414 73.4
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 9.2e-179 630.6 437 72.3
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 2.7e-178 629.0 431 72.6
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 6.0e-178 627.9 438 71.5
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 1.5e-176 623.2 453 69.1
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 2.5e-176 622.5 386 76.7
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.1e-175 619.4 392 76.0
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 2.8e-175 619.0 408 73.3
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 1.0e-169 600.5 386 73.8
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.7e-169 599.7 532 59.6
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 3.9e-169 598.6 419 70.9
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 1.5e-168 596.7 455 65.3
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 4.7e-167 591.7 432 68.1
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 1.2e-165 587.0 397 72.8
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 9.9e-165 583.9 418 65.8
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 6.0e-162 574.7 417 69.3
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 5.6e-160 568.2 449 66.1
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.7e-156 556.6 432 66.4
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 1.4e-155 553.5 441 65.8
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.9e-155 553.1 345 77.4
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 5.4e-155 551.6 433 64.9
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 9.2e-155 550.8 348 77.3
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.9e-152 543.1 431 63.6
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 2.5e-152 542.7 354 75.1
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 3.6e-151 538.9 543 54.5
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.1e-150 537.3 368 70.7
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 1.4e-150 537.0 443 63.7
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 1.4e-150 537.0 430 63.7
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 1.4e-147 526.9 341 74.8
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 3.5e-146 522.3 436 62.6
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 5.6e-144 515.0 410 60.5
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 3.6e-143 512.3 433 62.4
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 6.9e-142 508.1 292 86.6
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 1.2e-141 507.3 338 72.8
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 3.4e-141 505.8 408 60.5
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 4.0e-134 482.3 409 57.9
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.5e-133 480.3 320 71.6
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 2.6e-133 479.6 414 58.2
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.3e-129 467.2 475 54.9
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 1.5e-125 453.8 437 57.0
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 5.1e-121 438.7 317 70.3
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 3.3e-120 436.0 287 72.5
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 6.5e-116 421.8 284 73.2
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 1.0e-105 387.9 286 67.5
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 9.7e-104 381.3 445 46.1
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 1.0e-100 371.3 265 70.6
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 2.1e-98 363.6 303 61.4
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 2.2e-92 343.6 226 80.1
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 3.4e-88 329.7 315 54.3
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 4.8e-87 325.9 427 41.5
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 2.0e-85 320.5 211 73.0
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 5.2e-81 305.8 456 38.4
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 8.0e-74 282.0 171 81.9
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 7.3e-67 258.8 199 63.8
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.6e-50 204.5 135 73.3
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 8.1e-50 202.2 412 32.8
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 2.6e-48 197.2 128 73.4
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 1.1e-43 181.8 113 77.0
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 4.3e-43 179.9 104 84.6
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.6e-42 177.9 133 62.4
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 5.2e-41 172.9 101 81.2
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 5.1e-36 156.4 102 78.4
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 5.1e-36 156.4 102 78.4
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 6.9e-33 146.0 106 69.8
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 4.2e-30 136.7 74 85.1
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 1.1e-19 102.1 62 75.8
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 2.3e-12 77.8 45 75.6
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 8.7e-12 75.9 205 24.4
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 2.5e-11 74.3 46 78.3
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 9.0e-09 65.9 47 74.5
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 1.5e-08 65.1 40 75.0
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 3.8e-07 60.5 115 34.8


User provided reference genes

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