Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9376 Trifolium pratense HOM05D002663 ORTHO05D002988 1.2e-56 223.0 117 100.0
Psat6g104760 Pisum sativum HOM05D002663 ORTHO05D002988 6.1e-37 157.5 115 75.7
Medtr1g042730 Medicago truncatula HOM05D002663 ORTHO05D002988 2.3e-36 155.6 116 74.1
Ca_12013_v3 Cicer arietinum L. HOM05D002663 ORTHO05D002988 6.3e-34 147.5 118 73.7
TPR.G25174 Trifolium pratense HOM05D002663 ORTHO05D002988 3.5e-32 141.7 78 91.0
Lj6g0014805 Lotus japonicus HOM05D002663 ORTHO05D002988 7.8e-32 140.6 112 70.5
Glyma.02G005200 Glycine max HOM05D002663 ORTHO05D002988 1.4e-25 119.8 119 63.0
arahy.Tifrunner.gnm1.ann1.3DH906 Arachis hypogaea HOM05D002663 ORTHO05D002988 1.9e-25 119.4 116 62.1
arahy.Tifrunner.gnm1.ann1.93JRWW Arachis hypogaea HOM05D002663 ORTHO05D002988 3.2e-25 118.6 116 61.2
Phvul.007G274000 Phaseolus vulgaris HOM05D002663 ORTHO05D002988 3.2e-25 118.6 114 63.2
Lalb_Chr19g0128191 Lupinus albus HOM05D002663 ORTHO05D002988 1.2e-24 116.7 111 64.9
VMungo0720G1673 Vigna mungo HOM05D002663 ORTHO05D002988 3.0e-23 112.1 104 62.5
TAR362G0984 Trochodendron aralioides HOM05D002663 ORTHO05D002988 1.6e-21 106.3 70 75.7
PSO017G0007 Papaver somniferum HOM05D002663 ORTHO05D002988 8.0e-21 104.0 84 64.3
Gorai.002G025400 Gossypium raimondii HOM05D002663 ORTHO05D002988 1.8e-20 102.8 71 74.6
PSO063G6804 Papaver somniferum HOM05D002663 ORTHO05D002988 2.3e-20 102.4 84 63.1
COL.COLO4_15882 Corchorus olitorius HOM05D002663 ORTHO05D002988 3.1e-20 102.1 68 76.5
FAN12G2471 Fragaria x ananassa HOM05D002663 ORTHO05D002988 4.0e-20 101.7 82 68.3
Thecc.04G256100 Theobroma cacao HOM05D002663 ORTHO05D002988 4.0e-20 101.7 67 76.1
FAN17G1274 Fragaria x ananassa HOM05D002663 ORTHO05D002988 5.2e-20 101.3 82 69.5
FAN22G0078 Fragaria x ananassa HOM05D002663 ORTHO05D002988 5.2e-20 101.3 82 69.5
MD16G1219600 Malus domestica HOM05D002663 ORTHO05D002988 5.2e-20 101.3 85 67.1
FvH4_4g03680 Fragaria vesca HOM05D002663 ORTHO05D002988 6.8e-20 100.9 82 68.3
Ciclev10005068m.g Citrus clementina HOM05D002663 ORTHO05D002988 1.5e-19 99.8 70 70.0
Eucgr.H03041 Eucalyptus grandis HOM05D002663 ORTHO05D002988 1.5e-19 99.8 74 68.9
vmacro15444 Vaccinium macrocarpon HOM05D002663 ORTHO05D002988 2.6e-19 99.0 116 56.0
Peaxi162Scf00579g00048 Petunia axillaris HOM05D002663 ORTHO05D002988 3.4e-19 98.6 107 51.4
Solyc06g053600.4 Solanum lycopersicum HOM05D002663 ORTHO05D002988 4.4e-19 98.2 57 80.7
Sopen06g018690 Solanum pennellii HOM05D002663 ORTHO05D002988 4.4e-19 98.2 57 80.7
PGSC0003DMG400016293 Solanum tuberosum HOM05D002663 ORTHO05D002988 4.4e-19 98.2 57 80.7
CSS0029715 Camellia sinensis var. sinensis HOM05D002663 ORTHO05D002988 5.8e-19 97.8 79 64.6
Nn1g02781 Nelumbo nucifera HOM05D002663 ORTHO05D002988 5.8e-19 97.8 70 70.0
CANSAT78G1183 Cannabis sativa HOM05D002663 ORTHO05D002988 7.5e-19 97.4 84 65.5
Cpa.g.sc44.50 Carica papaya HOM05D002663 ORTHO05D002988 7.5e-19 97.4 76 64.5
EL10Ac3g05002 Beta vulgaris HOM05D002663 ORTHO05D002988 9.8e-19 97.1 55 85.5
CARHR003760 Cardamine hirsuta HOM05D002663 ORTHO05D002988 9.8e-19 97.1 63 68.3
Dinv29857 Davidia involucrata HOM05D002663 ORTHO05D002988 9.8e-19 97.1 74 68.9
Gohir.A01G024900 Gossypium hirsutum HOM05D002663 ORTHO05D002988 9.8e-19 97.1 67 73.1
Gohir.D01G023000 Gossypium hirsutum HOM05D002663 ORTHO05D002988 9.8e-19 97.1 68 72.1
ATR0736G162 Amborella trichopoda HOM05D002663 ORTHO05D002988 1.3e-18 96.7 66 72.7
Hma1.2p1_0992F.1_g245210 Hydrangea macrophylla HOM05D002663 ORTHO05D002988 1.3e-18 96.7 109 53.2
Gorai.002G025500 Gossypium raimondii HOM05D002663 ORTHO05D002988 1.7e-18 96.3 67 73.1
Prupe.1G040000 Prunus persica HOM05D002663 ORTHO05D002988 1.7e-18 96.3 52 88.5
Nitab4.5_0005627g0010 Nicotiana tabacum HOM05D002663 ORTHO05D002988 2.2e-18 95.9 98 54.1
GSVIVG01027822001 Vitis vinifera HOM05D002663 ORTHO05D002988 2.2e-18 95.9 52 86.5
Atru.chr4.2054 Acer truncatum HOM05D002663 ORTHO05D002988 2.9e-18 95.5 103 55.3
Sabra08G0127600 Salix brachista HOM05D000189 ORTHO05D000474 2.9e-18 95.5 79 62.0
CAN.G374.14 Capsicum annuum HOM05D002663 ORTHO05D002988 3.7e-18 95.1 108 53.7
Actinidia39905 Actinidia chinensis HOM05D002663 ORTHO05D002988 4.9e-18 94.7 88 60.2
Cc03_g05580 Coffea canephora HOM05D002663 ORTHO05D002988 4.9e-18 94.7 90 58.9
Migut.N00273 Erythranthe guttata HOM05D002663 ORTHO05D002988 4.9e-18 94.7 77 67.5
Gohir.D01G023100 Gossypium hirsutum HOM05D002663 ORTHO05D002988 6.4e-18 94.4 67 71.6
Carub.0001s0360 Capsella rubella HOM05D002663 ORTHO05D002988 8.3e-18 94.0 62 69.4
Os03g0611200 Oryza sativa ssp. japonica HOM05D002663 ORTHO05D002988 8.3e-18 94.0 71 64.8
PGR004G1088 Punica granatum HOM05D002663 ORTHO05D002988 1.1e-17 93.6 117 50.4
RcHm_v2.0_Chr4g0393291 Rosa chinensis HOM05D002663 ORTHO05D002988 1.1e-17 93.6 91 61.5
HPP92_008955 Vanilla planifolia HOM05D002663 ORTHO05D002988 1.1e-17 93.6 72 61.1
GSVIVG01027820001 Vitis vinifera HOM05D002663 ORTHO05D002988 1.1e-17 93.6 86 60.5
AT1G04420 Arabidopsis thaliana HOM05D002663 ORTHO05D002988 1.4e-17 93.2 58 70.7
CiPaw.01G184000 Carya illinoinensis HOM05D002663 ORTHO05D002988 1.4e-17 93.2 75 62.7
Nitab4.5_0000302g0190 Nicotiana tabacum HOM05D002663 ORTHO05D002988 1.4e-17 93.2 109 53.2
QL06p018104 Quercus lobata HOM05D002663 ORTHO05D002988 1.4e-17 93.2 98 59.2
unitig_26.g9552 Utricularia gibba HOM05D002663 ORTHO05D002988 1.4e-17 93.2 73 67.1
AUR62015568 Chenopodium quinoa HOM05D002663 ORTHO05D002988 2.4e-17 92.4 74 64.9
Ah.04g155740 Amaranthus hybridus HOM05D002663 ORTHO05D002988 3.2e-17 92.0 106 52.8
Aqoxy2G03650 Aquilegia oxysepala HOM05D002663 ORTHO05D002988 4.1e-17 91.7 79 60.8
AUR62002140 Chenopodium quinoa HOM05D002663 ORTHO05D002988 4.1e-17 91.7 74 64.9
Prupe.1G039700 Prunus persica HOM05D002663 ORTHO05D002988 4.1e-17 91.7 93 55.9
Rhsim02G0037500 Rhododendron simsii HOM05D002663 ORTHO05D002988 4.1e-17 91.7 63 74.6
RcHm_v2.0_Chr4g0393301 Rosa chinensis HOM05D002663 ORTHO05D002988 4.1e-17 91.7 91 60.4
THA.LOC104801083 Tarenaya hassleriana HOM05D002663 ORTHO05D002988 4.1e-17 91.7 84 56.0
Aa31LG1G20460 Aethionema arabicum HOM05D002663 ORTHO05D002988 5.4e-17 91.3 52 76.9
SalBow3G3891 Salvia bowleyana HOM05D002663 ORTHO05D002988 5.4e-17 91.3 76 64.5
Sp1g03240 Schrenkiella parvula HOM05D002663 ORTHO05D002988 5.4e-17 91.3 52 78.8
MSTRG.21915 Avicennia marina HOM05D002663 ORTHO05D002988 9.2e-17 90.5 118 52.5
BcaC07g36908 Brassica carinata HOM05D002663 ORTHO05D002988 9.2e-17 90.5 57 71.9
C05p02610 Brassica napus HOM05D002663 ORTHO05D002988 9.2e-17 90.5 57 71.9
BolC5t29042H Brassica oleracea HOM05D002663 ORTHO05D002988 9.2e-17 90.5 58 70.7
Thhalv10007737m.g Eutrema salsugineum HOM05D002663 ORTHO05D002988 9.2e-17 90.5 114 48.2
Lj3A693T80 Lonicera japonica HOM05D002663 ORTHO05D002988 9.2e-17 90.5 62 72.6
Lj3A693T83 Lonicera japonica HOM05D002663 ORTHO05D002988 9.2e-17 90.5 62 72.6
ClCG04G012670 Citrullus lanatus HOM05D002663 ORTHO05D002988 1.2e-16 90.1 61 68.9
CsaV3_1G005010 Cucumis sativus L. HOM05D002663 ORTHO05D002988 1.6e-16 89.7 63 68.3
DCAR_024256 Daucus carota HOM05D002663 ORTHO05D002988 1.6e-16 89.7 107 51.4
Potri.008G167400 Populus trichocarpa HOM05D002663 ORTHO05D002988 2.1e-16 89.4 110 50.0
Sc13g0005480 Simmondsia chinensis HOM05D002663 ORTHO05D002988 2.1e-16 89.4 106 52.8
Zm00001eb051500 Zea mays HOM05D002663 ORTHO05D002988 2.1e-16 89.4 51 80.4
Zm00001eb113180 Zea mays HOM05D002663 ORTHO05D002988 2.1e-16 89.4 51 80.4
Hund03041 Selenicereus undatus HOM05D002663 ORTHO05D002988 2.7e-16 89.0 52 82.7
A10p02860 Brassica napus HOM05D002663 ORTHO05D002988 3.5e-16 88.6 83 56.6
BraA10t42553Z Brassica rapa HOM05D002663 ORTHO05D002988 3.5e-16 88.6 83 56.6
Haze_11387 Corylus avellana HOM05D002663 ORTHO05D002988 3.5e-16 88.6 106 51.9
AUR62002141 Chenopodium quinoa HOM05D002663 ORTHO05D002988 6.0e-16 87.8 52 82.7
BcaB08g35998 Brassica carinata HOM05D002663 ORTHO05D002988 1.0e-15 87.0 54 70.4
Haze_11388 Corylus avellana HOM05D002663 ORTHO05D002988 1.0e-15 87.0 102 50.0
Oeu011504.1 Olea europaea HOM05D002663 ORTHO05D002988 1.3e-15 86.7 113 50.4
RcHm_v2.0_Chr4g0393231 Rosa chinensis HOM05D002663 ORTHO05D002988 1.3e-15 86.7 102 48.0
MBI07_g16927_MAGBIO Magnolia biondii HOM05D002663 ORTHO05D002988 1.7e-15 86.3 85 56.5
Sed0019138 Sechium edule HOM05D002663 ORTHO05D002988 2.3e-15 85.9 89 53.9
Cfa022963 Carpinus fangiana HOM05D002663 ORTHO05D002988 3.0e-15 85.5 106 50.0
ECA240G1813 Erigeron canadensis HOM05D001289 ORTHO05D002298 3.9e-15 85.1 53 71.7
MELO3C001939.2 Cucumis melo HOM05D002663 ORTHO05D002988 5.1e-15 84.7 87 55.2
SEGI_32749 Sequoiadendron giganteum HOM05D002663 ORTHO05D002988 6.6e-15 84.3 54 75.9
TWI09G0632 Tripterygium wilfordii HOM05D002663 ORTHO05D002988 6.6e-15 84.3 56 69.6
Pp3c12_10890 Physcomitrium patens HOM05D002663 ORTHO05D002988 1.1e-14 83.6 58 70.7
HanXRQChr03g0091441 Helianthus annuus HOM05D002663 ORTHO05D002988 1.2e-13 80.1 103 44.7
Lsat_1_v5_gn_3_120601 Lactuca sativa HOM05D002663 ORTHO05D002988 2.1e-13 79.3 51 68.6
Mapoly0053s0107 Marchantia polymorpha HOM05D002663 ORTHO05D002988 2.1e-13 79.3 77 53.2
MD13G1214400 Malus domestica HOM05D002663 ORTHO05D002988 4.0e-12 75.1 77 57.1
Zm00001eb007040 Zea mays HOM05D002663 ORTHO05D002988 5.2e-12 74.7 41 82.9
SMO134G0117 Selaginella moellendorffii HOM05D002663 ORTHO05D002988 2.0e-11 72.8 51 62.7
SGA_v2.0_scaffold31G12664 Striga asiatica HOM05D002663 ORTHO05D002988 2.6e-11 72.4 72 58.3
Zm00001eb150350 Zea mays HOM05D002663 ORTHO05D002988 5.8e-11 71.2 71 54.9
SMO274G0009 Selaginella moellendorffii HOM05D002663 ORTHO05D002988 3.7e-10 68.6 51 58.8
Cre10.g461900 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 1.1e-09 67.0 47 68.1
ECA240G4022 Erigeron canadensis HOM05D002663 ORTHO05D002988 1.4e-09 66.6 71 43.7
AUR62015567 Chenopodium quinoa HOM05D002663 ORTHO05D002988 1.6e-08 63.2 52 65.4
Cre17.g699900 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 1.0e-07 60.5 51 52.9
Manes.03G163800 Manihot esculenta HOM05D002663 ORTHO05D002988 2.5e-06 55.8 31 77.4
Nn3g21225 Nelumbo nucifera HOM05D002663 ORTHO05D002988 3.3e-06 55.5 42 59.5
MCO11G017 Micromonas commoda HOM05D002663 ORTHO05D002988 4.3e-06 55.1 49 55.1
Pp3s30_128 Physcomitrium patens HOM05D000352 ORTHO05D006304 5.6e-06 54.7 51 49.0
Nitab4.5_0001651g0140 Nicotiana tabacum HOM05D002663 ORTHO05D002988 9.5e-06 53.9 42 61.9


User provided reference genes

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