Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.5e-161 572.8 288 100.0
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 5.8e-137 491.1 296 87.2
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 1.5e-132 476.5 299 82.9
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 9.2e-127 457.2 296 81.1
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 5.2e-122 441.4 301 76.4
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 1.3e-120 436.8 300 77.7
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 2.9e-120 435.6 301 75.7
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 1.2e-118 430.3 290 75.2
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 2.7e-118 429.1 292 75.0
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 4.4e-113 411.8 284 75.0
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.9e-111 406.4 292 72.6
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 6.9e-106 387.9 307 67.8
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 5.4e-103 378.3 276 72.5
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 2.1e-102 376.3 309 66.0
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 2.1e-102 376.3 292 69.2
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 5.1e-101 371.7 300 66.3
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 1.9e-100 369.8 302 64.2
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 2.5e-100 369.4 280 66.8
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 3.3e-100 369.0 266 68.8
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 5.6e-100 368.2 284 65.5
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 5.6e-100 368.2 289 67.5
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.6e-99 366.7 335 60.6
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 2.1e-99 366.3 290 63.8
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 2.1e-99 366.3 291 64.3
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 2.8e-99 365.9 294 68.0
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.8e-99 365.2 287 67.9
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.8e-99 365.2 287 67.9
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 8.1e-99 364.4 306 62.1
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 1.8e-98 363.2 228 77.6
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 3.1e-98 362.5 291 63.6
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 3.1e-98 362.5 296 66.9
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 6.9e-98 361.3 256 70.3
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 6.9e-98 361.3 281 67.3
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 9.0e-98 360.9 279 65.2
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.5e-97 360.1 287 66.6
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.0e-97 359.8 287 66.6
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 5.8e-97 358.2 241 72.6
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 2.9e-96 355.9 292 63.4
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 3.8e-96 355.5 272 66.5
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 4.9e-96 355.1 225 74.2
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 2.1e-94 349.7 276 64.5
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 1.8e-93 346.7 292 62.3
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 3.0e-93 345.9 287 62.4
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 3.0e-93 345.9 291 63.2
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 3.9e-93 345.5 245 69.0
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 5.1e-93 345.1 305 61.3
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 6.7e-93 344.7 228 72.4
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 1.5e-92 343.6 255 69.4
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 1.9e-92 343.2 301 59.8
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 3.3e-92 342.4 245 69.4
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 1.6e-91 340.1 294 62.2
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 1.6e-91 340.1 267 65.9
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 2.1e-91 339.7 225 73.8
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 2.8e-91 339.3 298 61.1
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 6.2e-91 338.2 233 70.4
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 8.1e-91 337.8 277 62.8
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 8.1e-91 337.8 245 68.2
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 1.8e-90 336.7 261 66.7
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 1.8e-90 336.7 254 66.5
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 3.1e-90 335.9 286 63.6
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 4.0e-90 335.5 289 63.0
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 4.0e-90 335.5 299 60.2
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 5.3e-90 335.1 287 61.3
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 6.9e-90 334.7 248 68.5
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 6.9e-90 334.7 285 62.1
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 6.9e-90 334.7 285 62.1
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 6.9e-90 334.7 232 72.0
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 9.0e-90 334.3 308 58.8
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 1.2e-89 334.0 226 71.2
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.2e-89 334.0 201 79.1
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 1.5e-89 333.6 249 68.7
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 1.5e-89 333.6 223 72.2
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 2.0e-89 333.2 228 68.9
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 7.6e-89 331.3 277 61.0
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 1.3e-88 330.5 235 70.2
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 3.8e-88 328.9 250 68.4
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 3.8e-88 328.9 300 60.3
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 4.9e-88 328.6 233 69.5
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 8.4e-88 327.8 238 70.2
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 8.4e-88 327.8 248 65.7
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 1.9e-87 326.6 273 64.8
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 1.9e-87 326.6 273 64.8
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 2.5e-87 326.2 297 60.3
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 1.8e-85 320.1 254 65.4
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 3.0e-85 319.3 289 59.9
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 9.6e-84 314.3 284 61.3
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 1.3e-83 313.9 215 74.0
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 2.1e-83 313.2 233 69.5
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 4.8e-83 312.0 211 68.2
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.4e-82 310.5 222 66.7
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 3.1e-74 282.7 218 59.6
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 2.1e-70 270.0 238 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 5.7e-68 261.9 221 56.6
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 5.7e-68 261.9 219 56.6
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 4.2e-63 245.7 216 57.4
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 1.6e-57 227.3 157 68.8
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 8.0e-54 214.9 155 69.0
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 1.0e-53 214.5 211 49.3
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 4.0e-53 212.6 194 58.8
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 4.0e-53 212.6 181 58.6
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 5.2e-53 212.2 206 60.2
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.2e-52 211.1 236 47.0
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 9.7e-52 208.0 191 50.8
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 2.8e-51 206.5 167 64.1
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.3e-48 197.6 141 67.4
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 3.1e-42 176.4 115 75.7
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.6e-41 174.1 122 68.0
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 5.0e-40 169.1 154 57.8
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.1e-38 163.7 121 64.5
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 2.3e-37 160.2 151 62.3
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 5.4e-34 149.1 95 73.7
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 9.2e-34 148.3 83 85.5
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 9.2e-34 148.3 83 85.5
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 6.4e-19 99.0 225 28.0
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 3.9e-16 89.7 111 46.8
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 7.1e-10 68.9 244 25.0
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.1e-09 67.4 274 24.5
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 3.5e-09 66.6 218 24.8
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 4.6e-09 66.2 63 57.1
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 2.3e-08 63.9 277 23.1
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 2.3e-08 63.9 230 25.7
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 3.0e-08 63.5 40 67.5
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 8.6e-08 62.0 203 23.2
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 1.9e-07 60.8 232 22.4
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 7.3e-07 58.9 67 52.2
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 7.3e-07 58.9 47 61.7
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 9.5e-07 58.5 269 23.8
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 4.7e-06 56.2 130 25.4
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 4.7e-06 56.2 239 21.8
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 4.7e-06 56.2 46 54.3
FAN14G2601 Fragaria x ananassa HOM05D006384 ORTHO05D007917 6.2e-06 55.8 74 45.9
FAN14G5547 Fragaria x ananassa HOM05D006384 ORTHO05D007917 6.2e-06 55.8 74 45.9


User provided reference genes

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