Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 4.4e-254 880.9 488 100.0
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 1.8e-231 805.8 488 89.1
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 9.5e-225 783.5 489 89.4
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 4.9e-221 771.2 488 86.1
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 4.3e-177 625.2 487 68.2
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 5.0e-173 611.7 490 68.2
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 1.5e-166 590.1 492 65.7
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 3.8e-165 585.5 490 62.9
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 3.2e-164 582.4 489 62.2
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 5.5e-164 581.6 490 62.4
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.2e-163 580.5 490 64.5
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 5.7e-161 571.6 487 63.2
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 1.8e-159 566.6 488 60.0
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 6.9e-159 564.7 488 59.8
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 8.5e-157 557.8 488 59.4
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 7.4e-153 544.7 488 57.4
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 4.8e-152 542.0 488 58.6
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 8.2e-152 541.2 488 59.0
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.1e-151 540.8 495 56.2
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.8e-151 540.0 488 59.0
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 2.4e-151 539.7 492 58.7
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 1.6e-150 537.0 491 59.3
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 1.0e-149 534.3 499 59.1
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.4e-146 523.9 477 59.1
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 5.2e-146 521.9 484 59.3
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 1.3e-144 517.3 497 59.0
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 3.1e-143 512.7 483 56.7
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 4.5e-142 508.8 480 57.3
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.9e-140 503.4 490 54.9
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.6e-139 499.2 491 55.8
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 3.6e-139 499.2 495 54.7
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 4.7e-139 498.8 484 53.9
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.0e-138 497.7 494 54.5
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.0e-138 497.7 484 54.5
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 5.2e-138 495.4 495 53.1
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 6.8e-138 495.0 487 53.8
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 2.6e-137 493.0 482 55.2
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.2e-136 490.0 476 55.7
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 5.4e-135 485.3 482 54.1
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 9.1e-135 484.6 489 52.8
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.2e-134 484.2 484 54.3
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 2.0e-134 483.4 476 56.5
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 4.5e-134 482.3 488 54.3
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 5.9e-134 481.9 488 52.5
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.0e-133 481.1 490 52.2
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.7e-133 480.3 484 53.1
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.2e-133 479.9 490 54.3
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 5.0e-133 478.8 485 54.2
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.2e-131 474.2 484 53.3
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.6e-131 473.8 484 53.1
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.6e-131 472.6 484 53.1
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.7e-131 472.2 484 52.3
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.1e-131 471.9 484 53.1
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.4e-130 470.7 486 53.9
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 5.2e-130 468.8 484 52.7
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 2.0e-129 466.8 485 52.8
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.7e-128 463.8 481 50.9
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 4.9e-128 462.2 486 50.4
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 3.1e-127 459.5 481 52.0
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.7e-126 456.4 482 51.7
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 3.5e-126 456.1 483 52.0
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.3e-125 453.4 483 51.3
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.3e-125 453.4 482 51.2
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.8e-125 452.6 482 51.2
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 5.0e-125 452.2 494 49.8
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.1e-123 446.8 485 51.8
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.7e-123 445.7 492 50.4
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.2e-122 442.2 482 50.8
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 5.9e-118 428.7 494 48.2
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 1.7e-117 427.2 498 48.4
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 3.0e-117 426.4 491 48.1
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 1.2e-115 421.0 496 47.6
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 2.1e-115 420.2 462 52.2
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 8.0e-115 418.3 496 47.4
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 4.0e-114 416.0 496 47.2
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 1.5e-113 414.1 481 46.6
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 2.0e-113 413.7 487 47.8
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.7e-112 410.6 479 45.9
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 6.4e-112 408.7 630 40.3
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 5.4e-111 405.6 455 48.4
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 9.2e-111 404.8 478 46.2
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 1.2e-110 404.4 466 48.1
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 2.3e-109 400.2 483 45.1
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 3.0e-109 399.8 503 46.3
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 8.6e-109 398.3 541 44.4
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.6e-107 394.0 479 44.7
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 4.7e-107 392.5 438 51.1
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 6.2e-107 392.1 488 45.9
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 2.3e-106 390.2 485 45.8
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 2.3e-106 390.2 486 46.1
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.5e-105 387.5 464 46.3
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 4.4e-105 386.0 464 46.1
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 3.7e-104 382.9 486 47.7
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 6.4e-104 382.1 482 48.3
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.4e-103 380.2 475 42.7
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 4.1e-103 379.4 360 55.0
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 7.8e-102 375.2 483 45.3
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.0e-101 374.8 475 42.7
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.3e-101 374.4 475 42.7
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 7.3e-100 368.6 469 45.4
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 3.6e-99 366.3 483 50.1
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.5e-97 360.9 264 65.5
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 1.3e-96 357.8 476 41.2
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 6.4e-96 355.5 277 61.0
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.9e-95 354.0 441 44.0
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 3.5e-94 349.7 482 42.5
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.7e-93 347.4 578 44.3
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 3.3e-92 343.2 264 62.9
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.6e-92 341.7 253 64.0
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.6e-92 341.7 253 64.0
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 2.1e-91 340.5 485 41.0
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.8e-91 340.1 475 40.2
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 2.6e-89 333.6 462 42.2
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.2e-87 326.2 383 51.2
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 6.6e-85 318.9 475 38.3
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.3e-83 314.7 475 37.7
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 6.9e-82 308.9 479 39.5
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 9.9e-81 305.1 263 58.2
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 4.3e-76 289.7 481 36.8
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 4.8e-75 286.2 456 37.7
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 2.2e-72 277.3 264 52.7
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.0e-69 268.5 469 38.6
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 1.3e-59 235.0 450 32.2
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 2.8e-59 233.8 480 32.3
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 1.1e-55 221.9 436 31.9
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 4.4e-44 183.3 495 29.9
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 2.9e-40 170.6 136 55.9
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.9e-40 170.6 253 43.9
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 2.9e-40 170.6 260 38.5
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 1.4e-39 168.3 266 38.3
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.9e-39 167.9 490 30.4
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 7.9e-38 162.5 218 38.1
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 1.1e-36 158.7 120 64.2
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 9.7e-36 155.6 357 34.7
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 4.8e-35 153.3 351 33.3
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 5.3e-34 149.8 165 49.1
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 7.0e-34 149.4 165 48.5
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-30 138.7 189 47.6
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.0e-29 134.0 106 58.5
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.5e-28 131.7 478 25.1
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.1e-26 123.6 192 44.3
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 1.2e-25 122.1 247 38.1
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.7e-25 120.9 138 53.6
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 3.5e-25 120.6 108 58.3
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 8.5e-24 115.9 225 32.4
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 5.5e-23 113.2 99 55.6
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 8.0e-22 109.4 140 45.0
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 8.0e-22 109.4 135 45.9
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 8.0e-22 109.4 135 45.9
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 4.0e-21 107.1 178 36.5
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 4.8e-19 100.1 476 23.5
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 7.0e-18 96.3 178 29.2
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 2.7e-17 94.4 80 55.0
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 3.8e-16 90.5 229 27.9
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 1.9e-15 88.2 97 44.3
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.2e-15 87.0 69 65.2
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.1e-14 84.7 70 64.3
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.8e-14 84.3 69 63.8
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 6.1e-14 83.2 460 23.9
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.8e-13 81.6 76 59.2
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 6.3e-11 73.2 224 29.9
Haze_04707 Corylus avellana HOM05D006763 ORTHO05D008659 3.5e-09 67.4 120 42.5


User provided reference genes

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