Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 3.3e-53 211.5 107 100.0
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 1.9e-48 195.7 107 88.8
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 1.7e-46 189.1 104 88.5
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 1.6e-44 182.6 107 84.1
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 2.4e-43 178.7 107 82.2
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 3.4e-42 174.9 107 81.3
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 4.4e-42 174.5 107 80.4
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 5.8e-42 174.1 107 79.4
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 7.6e-42 173.7 107 80.4
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 1.3e-41 172.9 107 80.4
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 1.7e-41 172.6 107 78.5
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 2.9e-41 171.8 107 76.6
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 2.9e-41 171.8 107 79.4
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 4.1e-40 167.9 107 76.6
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 4.1e-40 167.9 107 76.6
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 9.2e-40 166.8 106 78.3
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 1.2e-39 166.4 107 76.6
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 75.2
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 2.1e-39 165.6 107 75.7
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 2.7e-39 165.2 107 75.7
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 3.5e-39 164.9 107 74.8
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 4.6e-39 164.5 107 74.8
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 6.0e-39 164.1 107 76.6
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 7.8e-39 163.7 105 74.3
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 7.8e-39 163.7 105 74.3
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 1.0e-38 163.3 105 74.3
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 1.0e-38 163.3 105 74.3
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 1.7e-38 162.5 105 75.2
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 2.3e-38 162.2 105 74.3
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 2.3e-38 162.2 106 74.5
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 3.9e-38 161.4 107 72.9
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 3.9e-38 161.4 105 75.2
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 5.1e-38 161.0 106 73.6
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 5.1e-38 161.0 106 73.6
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 5.1e-38 161.0 107 71.0
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 6.6e-38 160.6 105 71.4
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 6.6e-38 160.6 107 74.8
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 6.6e-38 160.6 107 74.8
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 6.6e-38 160.6 104 76.9
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 1.1e-37 159.8 105 73.3
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 1.1e-37 159.8 104 74.0
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 1.1e-37 159.8 107 73.8
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 1.1e-37 159.8 107 73.8
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 1.5e-37 159.5 105 74.3
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.9e-37 159.1 105 73.3
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 3.3e-37 158.3 107 73.8
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 3.3e-37 158.3 107 71.0
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 4.3e-37 157.9 106 72.6
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 5.6e-37 157.5 107 75.7
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 5.6e-37 157.5 105 72.4
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 5.6e-37 157.5 105 72.4
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 7.3e-37 157.1 106 69.8
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 9.6e-37 156.8 105 73.3
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 1.2e-36 156.4 107 71.0
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 1.2e-36 156.4 107 70.1
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 1.6e-36 156.0 107 72.9
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 1.6e-36 156.0 107 71.0
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 1.6e-36 156.0 105 71.4
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 2.1e-36 155.6 105 70.5
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 3.6e-36 154.8 105 71.4
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.6e-36 154.8 105 72.4
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.6e-36 154.8 106 70.8
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.7e-36 154.5 105 72.4
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 4.7e-36 154.5 107 69.2
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 4.7e-36 154.5 103 72.8
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 6.2e-36 154.1 105 70.5
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 6.2e-36 154.1 106 70.8
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 6.2e-36 154.1 136 63.2
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 6.2e-36 154.1 103 72.8
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 6.2e-36 154.1 107 72.0
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 1.4e-35 152.9 105 68.6
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 1.4e-35 152.9 105 71.4
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 1.4e-35 152.9 105 71.4
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 1.8e-35 152.5 107 68.2
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 2.4e-35 152.1 105 72.4
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 3.1e-35 151.8 105 72.4
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 4.0e-35 151.4 107 71.0
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 4.0e-35 151.4 99 74.7
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 5.2e-35 151.0 107 70.1
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 5.2e-35 151.0 107 72.0
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 5.2e-35 151.0 105 69.5
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 2.6e-34 148.7 103 69.9
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 2.6e-34 148.7 107 69.2
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 3.4e-34 148.3 107 70.1
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 7.6e-34 147.1 103 69.9
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 9.9e-34 146.7 103 68.9
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 9.9e-34 146.7 103 68.9
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 9.9e-34 146.7 107 67.3
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 1.3e-33 146.4 103 68.9
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 1.3e-33 146.4 103 68.9
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 2.2e-33 145.6 105 65.7
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 3.8e-33 144.8 103 68.0
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 3.8e-33 144.8 99 69.7
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 4.9e-33 144.4 105 64.8
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 6.4e-33 144.1 104 65.4
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.1e-32 143.3 106 66.0
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 1.4e-32 142.9 106 67.9
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 1.4e-32 142.9 133 57.1
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 3.5e-31 138.3 105 65.7
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 3.5e-31 138.3 105 65.7
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 1.3e-30 136.3 105 63.8
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 3.0e-30 135.2 109 66.1
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 3.9e-30 134.8 103 63.1
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 4.3e-29 131.3 103 60.2
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 9.6e-29 130.2 92 68.5
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 2.8e-28 128.6 105 58.1
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 9.0e-27 123.6 94 61.7
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 5.8e-26 120.9 98 57.1
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 4.9e-25 117.9 98 56.1
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 6.4e-25 117.5 92 58.7
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 2.4e-24 115.5 104 52.9
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 3.2e-24 115.2 98 62.2
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 2.1e-23 112.5 78 71.8
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 6.0e-23 110.9 93 57.0
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 1.3e-22 109.8 91 59.3
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 1.3e-22 109.8 77 70.1
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 3.9e-22 108.2 83 60.2
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 2.5e-21 105.5 86 65.1
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 4.3e-21 104.8 91 54.9
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 9.6e-21 103.6 68 69.1
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.6e-20 102.8 71 73.2
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.1e-20 102.4 71 73.2
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 2.8e-20 102.1 76 65.8
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 2.8e-20 102.1 75 62.7
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 3.1e-19 98.6 79 59.5
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 9.9e-18 93.6 113 49.6
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 8.4e-17 90.5 98 54.1
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 1.6e-15 86.3 105 48.6
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 3.9e-14 81.6 79 59.5
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 1.1e-11 73.6 50 74.0
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 3.1e-11 72.0 45 71.1
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 1.3e-09 66.6 84 41.7
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 1.9e-08 62.8 45 68.9
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 2.7e-07 58.9 42 59.5
ClCG10G020180 Citrullus lanatus HOM05D005747 ORTHO05D149649 7.9e-07 57.4 37 67.6


User provided reference genes

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