Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 8.1e-96 354.4 276 100.0
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 4.7e-80 302.0 276 90.2
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 3.1e-79 299.3 276 90.2
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 4.0e-71 272.3 276 85.5
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 6.9e-71 271.6 270 85.2
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 2.0e-70 270.0 276 86.6
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 2.6e-70 269.6 259 89.6
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 7.6e-70 268.1 268 82.5
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 9.3e-68 261.2 259 88.0
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 1.1e-63 247.7 267 82.0
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 9.0e-63 244.6 276 79.7
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 9.0e-63 244.6 276 79.7
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 9.0e-63 244.6 267 80.9
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.2e-62 244.2 267 81.6
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 3.4e-62 242.7 262 83.2
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.3e-61 240.7 259 83.4
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 1.7e-61 240.4 260 83.1
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 2.2e-61 240.0 258 82.6
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 6.4e-61 238.4 269 81.4
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 2.4e-60 236.5 262 82.1
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 2.4e-60 236.5 262 82.1
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.2e-59 234.2 262 81.7
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 2.1e-59 233.4 267 81.3
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.1e-59 233.4 267 81.3
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.5e-59 232.6 267 81.3
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 6.0e-59 231.9 251 83.7
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 7.9e-59 231.5 266 80.1
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 1.3e-58 230.7 266 79.7
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.3e-58 230.7 268 72.8
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 1.3e-58 230.7 262 80.5
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.8e-58 230.3 261 81.2
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.8e-58 230.3 266 80.1
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 2.3e-58 229.9 268 80.2
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 2.3e-58 229.9 268 79.1
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 2.3e-58 229.9 268 79.1
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 5.1e-58 228.8 271 79.3
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 6.7e-58 228.4 268 79.5
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 6.7e-58 228.4 267 79.8
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 8.7e-58 228.0 268 79.5
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.1e-57 227.6 254 83.1
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.1e-57 227.6 265 79.2
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.9e-57 226.9 268 79.1
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 2.5e-57 226.5 276 76.8
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 5.6e-57 225.3 266 79.3
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 7.4e-57 224.9 260 79.2
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 1.3e-56 224.2 268 79.1
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 2.8e-56 223.0 268 78.4
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 4.8e-56 222.2 268 78.0
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 8.2e-56 221.5 269 79.6
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 1.1e-55 221.1 272 77.2
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.4e-55 220.7 268 77.6
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.4e-55 220.7 262 79.4
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 1.8e-55 220.3 249 83.5
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.4e-55 219.9 267 77.9
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.4e-55 219.9 267 77.9
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 3.1e-55 219.5 271 79.0
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.1e-55 219.5 269 78.1
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 6.9e-55 218.4 270 77.0
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.9e-55 218.4 267 78.3
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 6.9e-55 218.4 262 79.0
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 6.9e-55 218.4 276 77.2
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 9.0e-55 218.0 268 79.5
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.5e-54 215.7 252 81.3
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 4.5e-54 215.7 252 81.3
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.5e-54 215.7 270 75.9
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.3e-53 214.2 268 76.5
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.3e-53 214.2 268 76.5
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.2e-53 213.4 269 77.7
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 2.9e-53 213.0 244 84.4
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.9e-53 213.0 268 76.1
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.1e-52 211.1 268 76.1
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 1.4e-52 210.7 262 77.5
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 3.2e-52 209.5 251 79.7
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 7.1e-52 208.4 258 79.5
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 7.1e-52 208.4 252 74.6
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 7.1e-52 208.4 252 77.0
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 2.1e-51 206.8 269 76.6
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 2.7e-51 206.5 262 77.9
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.5e-51 206.1 269 75.1
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 3.5e-51 206.1 268 75.7
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 4.6e-51 205.7 262 75.2
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 4.6e-51 205.7 269 74.3
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 7.9e-51 204.9 266 75.2
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 1.3e-50 204.1 271 75.6
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.8e-50 203.8 273 75.1
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 2.3e-50 203.4 251 78.5
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 3.0e-50 203.0 272 74.3
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 5.1e-50 202.2 269 74.0
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 6.7e-50 201.8 268 75.4
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 8.7e-50 201.4 269 73.6
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 8.7e-50 201.4 252 79.0
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 8.7e-50 201.4 263 76.0
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.1e-49 201.1 270 74.4
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 1.5e-49 200.7 271 74.2
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 1.5e-49 200.7 260 75.8
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 3.3e-49 199.5 271 73.4
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 5.7e-49 198.7 275 75.3
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 5.7e-49 198.7 269 73.2
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 5.7e-49 198.7 269 73.2
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 5.7e-49 198.7 269 73.2
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 9.7e-49 198.0 271 73.1
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 4.8e-48 195.7 267 74.5
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 6.3e-48 195.3 269 74.7
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.1e-47 194.5 269 72.5
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.1e-47 194.5 263 76.4
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 1.1e-47 194.5 269 74.7
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 4.1e-47 192.6 252 76.6
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 4.1e-47 192.6 266 73.3
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 5.3e-47 192.2 252 76.6
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 5.3e-47 192.2 271 73.1
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 9.0e-47 191.4 274 73.4
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 9.0e-47 191.4 274 73.4
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.2e-46 191.0 248 81.0
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-46 190.7 274 73.4
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-46 190.7 271 72.7
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 1.5e-46 190.7 271 72.7
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 2.0e-46 190.3 260 70.8
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.0e-46 190.3 277 71.1
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 4.5e-46 189.1 269 73.6
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 5.9e-46 188.7 262 74.0
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 5.9e-46 188.7 280 47.9
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 7.7e-46 188.3 277 71.1
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.3e-45 187.6 231 83.1
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 6.5e-45 185.3 259 74.1
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.1e-44 184.5 260 71.9
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.4e-44 184.1 278 41.0
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.9e-44 183.7 250 68.8
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 5.5e-44 182.2 253 75.1
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 1.2e-43 181.0 261 71.6
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 6.1e-43 178.7 270 69.6
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 3.9e-42 176.0 277 69.3
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 6.7e-42 175.3 280 70.0
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 2.5e-41 173.3 238 79.8
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 5.7e-41 172.2 268 70.1
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 3.7e-40 169.5 230 79.6
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.1e-39 167.9 244 77.5
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.1e-39 166.4 238 78.2
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.5e-38 164.1 229 79.9
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.0e-38 163.7 260 68.8
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 3.6e-35 152.9 269 53.5
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 3.6e-35 152.9 86 87.2
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-34 150.2 236 74.6
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 7.4e-33 145.2 210 80.0
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 5.5e-28 129.0 87 73.6
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 7.2e-28 128.6 212 77.4
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.1e-27 127.1 210 78.6
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 8.0e-27 125.2 97 66.0
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.3e-26 123.6 266 64.3
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 2.3e-26 123.6 264 53.8
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 3.9e-26 122.9 266 63.9
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 2.0e-22 110.5 279 56.6
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 7.7e-22 108.6 99 55.6
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.8e-21 106.3 93 64.5
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.2e-19 101.3 86 61.6
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.7e-16 90.9 89 49.4
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 5.9e-14 82.4 58 74.1
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 5.4e-07 59.3 256 55.1


User provided reference genes

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