Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.6e-144 516.2 275 100.0
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.8e-135 486.1 275 93.5
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 5.7e-134 481.1 275 93.8
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 8.2e-133 477.2 275 93.8
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 1.4e-132 476.5 275 90.5
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.9e-129 466.1 275 87.3
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 7.2e-129 464.2 275 87.3
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 2.1e-128 462.6 275 87.3
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 4.7e-128 461.5 275 87.3
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 8.0e-128 460.7 275 86.9
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.8e-124 449.5 275 86.2
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.6e-123 446.4 305 78.4
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 5.0e-122 441.4 274 83.2
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 8.0e-120 434.1 274 81.4
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 4.0e-119 431.8 274 80.7
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 6.8e-119 431.0 275 80.7
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-118 430.3 274 80.7
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-118 430.3 274 80.7
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 2.0e-118 429.5 275 81.8
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 3.4e-118 428.7 275 80.4
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 4.4e-118 428.3 274 79.6
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.7e-117 426.4 274 79.9
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 4.8e-117 424.9 274 78.1
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.3e-117 424.5 274 79.6
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 8.3e-117 424.1 274 78.5
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 1.1e-116 423.7 274 78.5
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 2.4e-116 422.5 274 78.5
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 3.1e-116 422.2 274 79.2
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 3.1e-116 422.2 274 78.5
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 3.1e-116 422.2 274 78.5
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 4.1e-116 421.8 273 78.8
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 9.1e-116 420.6 274 78.5
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.2e-115 420.2 274 77.0
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 2.0e-115 419.5 274 79.6
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 2.0e-115 419.5 274 78.8
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 5.9e-115 417.9 274 77.7
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 5.9e-115 417.9 274 77.7
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 2.2e-114 416.0 274 77.4
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.9e-114 415.6 285 76.8
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.9e-114 415.6 272 78.7
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 3.8e-114 415.2 274 78.1
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 5.0e-114 414.8 274 78.1
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 8.5e-114 414.1 274 76.3
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.5e-113 413.3 274 77.4
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 1.9e-113 412.9 273 77.7
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.5e-113 412.5 274 75.9
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 4.2e-113 411.8 274 77.4
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 5.5e-113 411.4 273 76.9
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.2e-112 410.2 274 76.6
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 1.2e-112 410.2 274 75.9
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.2e-112 410.2 271 79.0
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 2.1e-112 409.5 273 77.3
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 2.7e-112 409.1 274 76.6
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 3.6e-112 408.7 273 78.8
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 8.0e-112 407.5 272 75.7
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 1.0e-111 407.1 270 77.8
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.4e-111 406.8 272 77.6
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.4e-111 406.8 273 76.6
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.3e-111 406.0 272 77.2
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.3e-111 406.0 272 77.2
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 3.0e-111 405.6 274 75.9
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 4.0e-111 405.2 274 76.6
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 4.0e-111 405.2 270 78.1
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 4.0e-111 405.2 274 76.3
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 6.8e-111 404.4 272 78.7
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 6.8e-111 404.4 274 75.9
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 8.8e-111 404.1 274 75.5
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 8.8e-111 404.1 274 75.5
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 1.2e-110 403.7 270 75.6
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-110 403.3 274 75.5
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 2.0e-110 402.9 272 76.5
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.6e-110 402.5 271 77.5
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 2.6e-110 402.5 272 76.8
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.6e-110 402.5 274 75.2
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 3.4e-110 402.1 272 76.1
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.4e-110 401.7 271 77.5
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 4.4e-110 401.7 270 78.1
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 5.7e-110 401.4 274 75.2
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.3e-109 400.2 274 75.2
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 2.2e-109 399.4 274 75.5
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.8e-109 399.1 290 72.4
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.8e-109 399.1 276 74.3
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 6.3e-109 397.9 278 75.9
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-108 396.7 274 74.8
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 9.1e-108 394.0 274 75.2
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 1.6e-107 393.3 283 73.1
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-106 390.2 274 74.5
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-106 390.2 274 74.5
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-106 390.2 274 74.5
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 1.3e-106 390.2 278 73.7
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.8e-106 388.7 270 76.3
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 8.6e-106 387.5 275 73.1
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 4.2e-105 385.2 316 66.5
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 5.5e-105 384.8 274 73.4
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 5.5e-105 384.8 270 76.3
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 2.8e-104 382.5 271 72.0
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 3.6e-104 382.1 266 74.8
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 6.1e-104 381.3 271 72.0
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 7.5e-102 374.4 274 73.0
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 9.8e-102 374.0 271 70.8
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.8e-100 369.8 269 71.7
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.4e-100 369.4 266 71.8
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 7.0e-100 367.9 269 71.0
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.7e-99 365.9 270 71.9
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.7e-98 363.2 333 61.3
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.9e-97 359.8 366 57.4
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.5e-97 359.4 288 65.6
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 4.3e-97 358.6 271 69.4
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.6e-96 356.7 266 72.2
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.8e-96 355.9 322 62.4
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 3.6e-96 355.5 275 66.5
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 5.2e-95 351.7 267 68.2
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 2.6e-94 349.4 254 72.0
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.0e-91 339.7 262 66.8
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.6e-88 330.1 217 79.3
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 9.8e-86 320.9 273 59.0
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.4e-84 317.0 272 57.4
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 6.0e-83 311.6 281 59.4
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 5.1e-82 308.5 485 43.1
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 8.6e-82 307.8 255 63.5
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.6e-82 307.8 485 43.1
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 5.2e-79 298.5 262 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.0e-78 296.6 262 60.7
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 2.6e-78 296.2 266 59.0
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 4.4e-78 295.4 255 62.0
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-77 293.9 282 57.1
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-77 293.1 282 57.4
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 1.1e-76 290.8 262 58.4
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.9e-76 290.0 258 60.9
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 4.1e-76 288.9 259 61.0
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 1.2e-75 287.3 262 57.3
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-74 283.9 282 56.0
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 5.1e-74 282.0 282 56.0
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-73 280.8 282 56.0
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 4.0e-71 272.3 259 61.0
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 8.9e-71 271.2 275 52.7
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.1e-68 264.2 161 82.0
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 9.3e-68 261.2 297 55.2
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 2.1e-67 260.0 269 51.7
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 6.6e-66 255.0 226 60.2
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-65 253.8 280 53.2
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-63 246.9 256 53.9
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 6.0e-59 231.9 263 50.2
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 6.0e-59 231.9 137 83.9
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 6.2e-56 221.9 252 50.8
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.4e-54 216.1 271 50.2
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 2.9e-53 213.0 267 49.1
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.5e-49 200.7 131 78.6
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.8e-47 193.7 136 75.7
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.4e-44 184.1 131 71.0
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.2e-44 183.0 148 65.5
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.5e-44 182.2 161 64.6
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-39 167.5 136 60.3
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 1.4e-39 167.5 227 45.4
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 9.0e-39 164.9 129 66.7
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.4e-38 162.9 409 32.5
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 3.8e-37 159.5 97 83.5
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.1e-36 157.9 100 82.0
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.1e-28 131.3 141 53.2
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 1.4e-28 131.0 139 52.5
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 1.6e-27 127.5 254 33.5
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.5e-25 120.2 261 32.2
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 3.1e-23 113.2 287 30.7
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 6.9e-23 112.1 70 85.7
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.6e-22 110.2 150 48.0
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 2.3e-18 97.1 111 49.5
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 3.0e-18 96.7 83 57.8
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 2.0e-17 94.0 68 70.6
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.3e-17 93.2 59 81.4
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 1.7e-16 90.9 69 62.3
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.7e-16 89.7 72 59.7
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.7e-16 89.7 72 59.7
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 8.2e-16 88.6 72 58.3
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 1.1e-15 88.2 71 66.2
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 2.4e-15 87.0 53 77.4
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 3.1e-15 86.7 52 82.7
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 4.1e-15 86.3 52 80.8
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-15 86.3 52 80.8
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 4.1e-15 86.3 52 80.8
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 9.1e-15 85.1 52 80.8
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 9.1e-15 85.1 72 56.9
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-13 80.5 50 78.0
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 2.1e-11 73.9 63 63.5
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.4e-07 60.5 52 57.7
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 2.0e-06 57.4 58 50.0
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 2.7e-06 57.0 40 70.0


User provided reference genes

Program Settings