Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 1.5e-203 712.6 366 100.0
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 8.3e-181 637.1 366 90.2
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 1.3e-178 629.8 357 91.0
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 4.2e-177 624.8 368 89.1
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 2.9e-149 532.3 371 75.7
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 2.9e-149 532.3 370 75.4
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 3.9e-146 521.9 368 76.6
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 5.8e-142 508.1 373 72.9
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 5.1e-138 495.0 376 72.6
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 6.2e-136 488.0 370 70.8
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 3.2e-132 475.7 375 69.6
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 5.1e-130 468.4 385 67.5
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 2.1e-128 463.0 383 66.6
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 2.1e-128 463.0 378 67.5
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 8.1e-128 461.1 377 67.1
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.8e-127 459.9 379 66.2
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 3.4e-126 455.7 384 66.1
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 1.3e-125 453.8 375 66.4
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 2.2e-125 453.0 377 67.1
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 2.4e-124 449.5 381 65.9
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 9.3e-124 447.6 381 64.8
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 4.6e-123 445.3 375 65.6
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 6.0e-123 444.9 375 65.3
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 7.9e-123 444.5 378 66.4
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 7.9e-123 444.5 382 64.7
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 7.9e-123 444.5 388 64.2
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 1.0e-122 444.1 382 65.2
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 1.3e-122 443.7 381 64.3
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.7e-122 443.4 385 64.9
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.7e-122 443.4 384 64.1
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.1e-122 441.8 388 64.4
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.8e-120 435.3 380 63.9
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.4e-119 433.7 380 64.2
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 1.4e-119 433.7 372 63.4
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 9.0e-119 431.0 376 63.8
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 1.5e-118 430.3 389 63.5
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 1.5e-118 430.3 368 65.2
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 7.6e-118 427.9 376 63.6
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 9.9e-118 427.6 377 62.9
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.7e-117 426.8 369 64.0
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 1.7e-117 426.8 373 62.7
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 2.9e-117 426.0 386 62.7
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 2.9e-117 426.0 368 64.7
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.9e-117 426.0 368 64.4
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.9e-117 426.0 368 64.1
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 3.8e-117 425.6 376 63.3
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 3.8e-117 425.6 390 61.3
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 4.9e-117 425.2 389 62.5
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 8.4e-117 424.5 374 62.0
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 3.2e-116 422.5 381 64.6
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 1.6e-115 420.2 380 62.6
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 1.6e-115 420.2 390 61.0
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 2.1e-115 419.9 345 66.7
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 4.6e-115 418.7 390 60.8
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 7.9e-115 417.9 392 61.0
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 1.3e-114 417.2 390 60.8
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 3.0e-114 416.0 382 62.0
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 5.1e-114 415.2 347 66.3
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 1.5e-113 413.7 364 64.3
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 1.9e-113 413.3 347 66.0
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 8.1e-112 407.9 368 62.8
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 2.4e-111 406.4 391 59.6
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 5.8e-110 401.7 375 60.8
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 7.6e-110 401.4 375 60.8
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 1.0e-109 401.0 372 61.0
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 1.3e-109 400.6 373 59.8
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 4.2e-108 395.6 390 58.7
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 9.3e-108 394.4 375 61.1
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 2.7e-107 392.9 350 63.1
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 2.7e-107 392.9 362 60.2
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 6.0e-107 391.7 331 64.7
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 6.0e-107 391.7 379 59.6
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 6.0e-107 391.7 379 56.5
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 1.0e-106 391.0 381 58.5
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 1.8e-106 390.2 331 64.4
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 1.8e-106 390.2 331 64.4
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 1.8e-106 390.2 395 58.2
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 2.3e-106 389.8 374 60.7
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 5.1e-106 388.7 341 64.8
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.5e-105 387.1 396 57.8
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 2.5e-105 386.3 345 62.6
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 5.7e-105 385.2 375 58.4
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 5.7e-105 385.2 374 58.8
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.1e-104 383.3 357 61.3
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 3.7e-104 382.5 372 57.8
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 3.7e-104 382.5 375 59.2
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 4.8e-104 382.1 345 62.3
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 6.3e-104 381.7 328 64.3
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 3.1e-103 379.4 348 61.2
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 4.1e-103 379.0 346 61.0
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 5.3e-103 378.6 331 62.5
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 2.6e-102 376.3 378 57.7
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 4.5e-102 375.6 347 61.1
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 7.6e-102 374.8 373 56.8
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 6.5e-101 371.7 348 60.9
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 1.1e-100 370.9 345 60.9
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 1.4e-100 370.5 348 61.2
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 7.2e-100 368.2 367 59.1
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 4.6e-99 365.5 370 57.8
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.9e-97 360.1 345 59.1
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 5.3e-95 352.1 378 56.1
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 5.9e-94 348.6 362 55.2
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 1.0e-93 347.8 385 54.0
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 6.1e-91 338.6 363 54.3
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 1.0e-90 337.8 373 52.5
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 4.4e-89 332.4 277 66.1
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 4.4e-89 332.4 328 58.5
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 1.3e-88 330.9 389 50.9
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 2.7e-83 313.2 393 50.1
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 4.7e-83 312.4 338 54.4
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 2.0e-81 307.0 288 62.2
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 2.0e-81 307.0 347 56.8
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 2.0e-81 307.0 347 56.8
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 5.7e-81 305.4 283 62.2
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.7e-80 303.9 326 53.1
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 6.5e-77 292.0 323 52.9
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 4.0e-74 282.7 256 56.6
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 7.5e-65 251.9 169 74.6
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 5.4e-63 245.7 354 43.8
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.6e-62 244.2 285 52.6
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.5e-62 243.0 285 52.3
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 1.6e-51 207.6 191 65.4
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 1.5e-49 201.1 217 54.4
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 9.5e-44 181.8 201 57.7
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 2.2e-40 170.6 344 39.8
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.4e-39 167.9 263 40.7
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 9.8e-33 145.2 188 42.6
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 7.8e-30 135.6 130 54.6
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 1.0e-29 135.2 82 74.4
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.9e-28 131.0 145 60.0
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 4.3e-28 129.8 95 68.4
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 5.6e-28 129.4 173 49.1
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 7.6e-25 119.0 162 50.0
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.0e-21 108.6 120 50.0
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 3.2e-15 87.0 89 50.6
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.9e-12 77.8 108 40.7
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 8.1e-11 72.4 262 25.6
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 2.6e-09 67.4 50 58.0
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 1.3e-08 65.1 247 23.9
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 1.4e-07 61.6 75 53.3
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 5.4e-07 59.7 282 27.0
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 7.1e-07 59.3 55 63.6


User provided reference genes

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