Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9262 Trifolium pratense HOM05D007106 ORTHO05D007770 1.8e-44 182.2 90 100.0
Psat4g050160 Pisum sativum HOM05D007106 ORTHO05D007770 1.5e-30 136.0 90 81.1
Glyma.05G026000 Glycine max HOM05D007106 ORTHO05D007770 4.7e-29 131.0 90 81.1
Glyma.17G100900 Glycine max HOM05D007106 ORTHO05D007770 1.4e-28 129.4 90 78.9
Lj4g0015417 Lotus japonicus HOM05D007106 ORTHO05D007770 2.1e-24 115.5 90 73.3
Phvul.003G189400 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 7.8e-24 113.6 91 69.2
Medtr4g108700 Medicago truncatula HOM05D007106 ORTHO05D007770 1.3e-23 112.8 73 79.5
Psat5g199960 Pisum sativum HOM05D007106 ORTHO05D007770 2.4e-20 102.1 90 58.9
Medtr3g435530 Medicago truncatula HOM05D007106 ORTHO05D007770 1.7e-18 95.9 93 59.1
Glyma.04G168400 Glycine max HOM05D007106 ORTHO05D007770 7.8e-16 87.0 92 54.3
Glyma.06G194600 Glycine max HOM05D007106 ORTHO05D007770 7.8e-16 87.0 87 57.5
TPR.G11889 Trifolium pratense HOM05D007106 ORTHO05D007770 1.3e-15 86.3 93 55.9
Lj1g0012300 Lotus japonicus HOM05D007106 ORTHO05D007770 3.9e-15 84.7 89 55.1
Lalb_Chr23g0273781 Lupinus albus HOM05D007106 ORTHO05D007770 1.1e-14 83.2 84 56.0
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 1.1e-12 76.6 93 47.3
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.1e-12 76.6 86 50.0
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 1.1e-12 76.6 86 50.0
arahy.Tifrunner.gnm1.ann1.Y9A4XN Arachis hypogaea HOM05D007106 ORTHO05D007770 1.8e-12 75.9 86 51.2
Phvul.009G186700 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 2.4e-12 75.5 95 51.6
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 6.9e-12 73.9 88 51.1
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 2.0e-11 72.4 88 48.9
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 4.4e-11 71.2 87 47.1
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 7.6e-11 70.5 92 50.0
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 7.6e-11 70.5 85 48.2
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 9.9e-11 70.1 83 49.4
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 9.9e-11 70.1 83 49.4
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 9.9e-11 70.1 86 46.5
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 9.9e-11 70.1 87 48.3
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 9.9e-11 70.1 87 48.3
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 2.2e-10 68.9 87 48.3
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 2.2e-10 68.9 89 47.2
Peaxi162Scf00274g00521 Petunia axillaris HOM05D007106 ORTHO05D007770 4.9e-10 67.8 88 44.3
TAR622G1352 Trochodendron aralioides HOM05D007106 ORTHO05D007770 1.1e-09 66.6 82 48.8
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.4e-09 66.2 87 46.0
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 1.4e-09 66.2 87 43.7
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 2.4e-09 65.5 87 44.8
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 4.2e-09 64.7 86 46.5
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 4.2e-09 64.7 86 46.5
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 4.2e-09 64.7 87 46.0
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 4.2e-09 64.7 87 46.0
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 5.4e-09 64.3 89 42.7
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 7.1e-09 63.9 88 45.5
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 7.1e-09 63.9 89 43.8
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 7.1e-09 63.9 90 47.8
arahy.Tifrunner.gnm1.ann1.DL456K Arachis hypogaea HOM05D007106 ORTHO05D007770 9.3e-09 63.5 84 50.0
Gohir.A07G066100 Gossypium hirsutum HOM05D007106 ORTHO05D007770 9.3e-09 63.5 87 46.0
Manes.14G078900 Manihot esculenta HOM05D007106 ORTHO05D007770 9.3e-09 63.5 90 48.9
Nitab4.5_0006000g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 9.3e-09 63.5 87 46.0
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 9.3e-09 63.5 88 48.9
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 9.3e-09 63.5 89 44.9
GSVIVG01007993001 Vitis vinifera HOM05D007106 ORTHO05D007770 9.3e-09 63.5 84 46.4
CSS0008414 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.2e-08 63.2 88 43.2
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.6e-08 62.8 91 41.8
arahy.Tifrunner.gnm1.ann1.FXK9PR Arachis hypogaea HOM05D048006 ORTHO05D007770 2.1e-08 62.4 105 39.0
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 2.1e-08 62.4 84 45.2
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 2.7e-08 62.0 87 42.5
Nitab4.5_0001128g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 3.5e-08 61.6 87 43.7
Cpa.g.sc423.1 Carica papaya HOM05D007106 ORTHO05D007770 4.6e-08 61.2 84 47.6
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 4.6e-08 61.2 89 43.8
MELO3C001986.2 Cucumis melo HOM05D007106 ORTHO05D007770 1.7e-07 59.3 86 44.2
CsaV3_1G005530 Cucumis sativus L. HOM05D007106 ORTHO05D007770 1.7e-07 59.3 86 45.3
HanXRQChr05g0155941 Helianthus annuus HOM05D007106 ORTHO05D007770 3.0e-07 58.5 66 50.0
Hund02644 Selenicereus undatus HOM05D007106 ORTHO05D007770 5.1e-07 57.8 80 38.8
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 6.6e-07 57.4 87 44.8
Eucgr.K02478 Eucalyptus grandis HOM05D007106 ORTHO05D007770 6.6e-07 57.4 87 41.4
TWI15G1028 Tripterygium wilfordii HOM05D007106 ORTHO05D007770 6.6e-07 57.4 89 42.7
Nitab4.5_0000121g0170 Nicotiana tabacum HOM05D007106 ORTHO05D007770 8.7e-07 57.0 90 38.9
Oeu022764.1 Olea europaea HOM05D007106 ORTHO05D007770 8.7e-07 57.0 91 40.7
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 1.1e-06 56.6 83 43.4
Ca_27246_v3 Cicer arietinum L. HOM05D007106 ORTHO05D007770 1.5e-06 56.2 59 57.6
Nn4g23194 Nelumbo nucifera HOM05D007106 ORTHO05D007770 1.5e-06 56.2 89 40.4
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 1.9e-06 55.8 89 41.6
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 2.5e-06 55.5 84 39.3
Nitab4.5_0008269g0020 Nicotiana tabacum HOM05D007106 ORTHO05D007770 5.6e-06 54.3 90 38.9
arahy.Tifrunner.gnm1.ann1.9K0L0T Arachis hypogaea HOM05D048006 ORTHO05D007770 7.3e-06 53.9 94 37.2
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 7.3e-06 53.9 92 37.0
Medtr6g027480 Medicago truncatula HOM05D007691 ORTHO05D008758 9.6e-06 53.5 91 37.4
Peaxi162Scf01256g00221 Petunia axillaris HOM05D007106 ORTHO05D007770 9.6e-06 53.5 90 40.0
PGSC0003DMG400019509 Solanum tuberosum HOM05D007106 ORTHO05D007770 9.6e-06 53.5 91 36.3


User provided reference genes

Program Settings