Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 3.6e-183 644.8 331 100.0
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 4.1e-155 551.6 331 86.7
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 9.2e-155 550.4 329 86.0
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 3.9e-153 545.0 329 85.7
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 5.0e-153 544.7 327 85.6
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 1.1e-152 543.5 329 85.4
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 1.9e-152 542.7 331 84.9
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 9.5e-152 540.4 329 85.1
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 2.1e-151 539.3 329 84.2
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 4.7e-151 538.1 329 85.1
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 4.7e-151 538.1 329 85.1
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 4.7e-151 538.1 329 84.2
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 3.1e-150 535.4 329 83.3
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 4.0e-150 535.0 335 83.6
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 1.5e-149 533.1 332 83.4
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.9e-147 526.2 328 82.6
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 7.1e-147 524.2 328 82.3
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 9.2e-147 523.9 327 82.9
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 1.2e-146 523.5 332 80.7
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 7.8e-146 520.8 330 82.1
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 7.8e-146 520.8 328 81.7
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 1.3e-145 520.0 327 82.0
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 3.9e-145 518.5 328 82.0
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 3.9e-145 518.5 328 81.7
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 5.1e-145 518.1 330 81.8
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.5e-144 516.5 332 81.0
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 2.5e-144 515.8 328 81.4
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 3.3e-144 515.4 330 80.9
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 5.6e-144 514.6 332 80.4
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 7.3e-144 514.2 325 81.8
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.1e-143 512.7 330 80.3
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 4.7e-143 511.5 327 81.7
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 1.1e-142 510.4 325 82.2
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.0e-142 508.4 330 80.6
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 5.2e-142 508.1 333 79.9
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 5.2e-142 508.1 333 79.9
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 6.8e-142 507.7 330 80.6
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 6.8e-142 507.7 327 80.1
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 2.6e-141 505.8 327 79.8
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.6e-141 505.8 327 80.1
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.4e-141 505.4 327 81.0
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 7.6e-141 504.2 327 80.7
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 2.9e-140 502.3 330 80.6
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.7e-140 501.9 327 80.4
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 8.4e-140 500.7 329 78.4
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 2.4e-139 499.2 329 78.1
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 7.1e-139 497.7 330 77.3
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 7.1e-139 497.7 329 77.8
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 7.1e-139 497.7 329 77.8
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 7.1e-139 497.7 329 77.8
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 7.1e-139 497.7 329 77.8
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 9.2e-139 497.3 329 78.1
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 9.2e-139 497.3 330 77.9
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 9.2e-139 497.3 330 77.9
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 9.2e-139 497.3 330 77.9
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.1e-138 496.1 330 77.6
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.1e-138 496.1 330 77.3
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 2.1e-138 496.1 329 79.6
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 3.5e-138 495.4 327 77.1
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 4.6e-138 495.0 328 76.8
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 6.0e-138 494.6 329 77.5
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 6.0e-138 494.6 330 77.3
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 6.0e-138 494.6 330 77.0
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 7.8e-138 494.2 329 77.5
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 7.8e-138 494.2 330 77.0
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 1.0e-137 493.8 330 76.7
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 1.7e-137 493.0 330 76.7
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 3.0e-137 492.3 327 77.4
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 3.9e-137 491.9 330 76.1
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 5.1e-137 491.5 326 77.6
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 6.6e-137 491.1 329 76.9
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 8.6e-137 490.7 328 76.5
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.1e-136 490.3 330 76.7
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.1e-136 490.3 329 77.8
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.5e-136 490.0 325 77.8
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 1.9e-136 489.6 331 77.6
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 2.5e-136 489.2 331 76.4
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 5.6e-136 488.0 371 71.7
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 5.6e-136 488.0 328 76.2
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 5.6e-136 488.0 330 75.2
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 9.6e-136 487.3 384 69.8
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.6e-135 486.5 332 75.3
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 3.6e-135 485.3 329 76.3
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 6.2e-135 484.6 331 76.1
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 1.4e-134 483.4 327 78.9
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 2.4e-134 482.6 333 75.1
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 4.0e-134 481.9 327 75.8
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 5.2e-134 481.5 357 70.9
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 6.8e-134 481.1 333 74.8
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.2e-133 480.3 331 76.4
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.6e-133 479.2 331 76.1
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 2.6e-133 479.2 325 76.3
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 2.6e-133 479.2 314 78.3
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 3.4e-133 478.8 304 81.2
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 7.6e-133 477.6 329 75.4
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 3.2e-131 472.2 454 59.9
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 7.1e-131 471.1 327 74.0
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 2.7e-130 469.2 329 77.2
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 1.0e-129 467.2 330 75.2
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 1.1e-128 463.8 330 71.5
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 5.6e-128 461.5 325 72.9
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 9.6e-128 460.7 329 74.5
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.1e-126 457.2 291 78.4
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 2.9e-124 449.1 330 75.2
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.1e-123 447.2 330 70.3
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 2.1e-122 443.0 325 70.2
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.4e-118 430.3 377 64.7
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 6.9e-118 427.9 300 74.7
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 2.1e-114 416.4 331 68.6
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 6.0e-114 414.8 279 75.3
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 1.5e-112 410.2 329 68.4
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 4.2e-107 392.1 332 65.7
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 9.3e-107 391.0 317 62.1
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 3.9e-105 385.6 234 84.6
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 3.7e-103 379.0 323 64.1
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 2.4e-102 376.3 324 59.3
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 5.0e-100 368.6 330 59.1
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.4e-94 350.5 233 74.2
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 7.2e-91 338.2 315 58.7
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 8.8e-89 331.3 274 64.2
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 5.9e-85 318.5 238 66.4
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 2.5e-83 313.2 197 82.7
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 1.8e-81 307.0 227 70.0
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 8.2e-79 298.1 220 74.5
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.2e-77 294.3 337 56.7
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 4.5e-77 292.4 335 54.0
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 4.5e-77 292.4 220 72.7
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 3.2e-75 286.2 339 45.1
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 3.0e-73 279.6 226 69.9
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 2.0e-69 266.9 167 79.0
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 2.4e-62 243.4 163 79.1
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 2.5e-59 233.4 268 51.1
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.2e-58 231.1 163 72.4
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 5.7e-56 222.2 329 45.6
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 5.9e-53 212.2 133 81.2
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.2e-48 198.0 130 79.2
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 3.7e-39 166.4 157 58.6
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 7.8e-37 158.7 162 56.8
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.0e-36 156.0 103 79.6
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 4.3e-35 152.9 89 80.9
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 8.1e-34 148.7 103 75.7
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 6.4e-31 139.0 195 47.2
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 1.9e-30 137.5 88 81.8
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 1.0e-28 131.7 69 88.4
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 1.7e-28 131.0 90 78.9
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.5e-27 127.9 88 72.7
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 4.7e-26 122.9 82 74.4
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 6.2e-26 122.5 72 77.8
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 1.4e-25 121.3 73 84.9
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 6.4e-23 112.5 77 79.2
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.9e-22 110.9 75 69.3
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 1.9e-22 110.9 69 76.8
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 1.3e-20 104.8 151 43.7
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 5.4e-14 82.8 65 72.3
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 1.7e-12 77.8 63 69.8
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 7.6e-08 62.4 85 47.1
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 1.3e-07 61.6 48 66.7
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 1.7e-07 61.2 34 82.4


User provided reference genes

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