Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 0.0e+00 1197.6 708 100.0
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 0.0e+00 1111.3 708 90.8
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 2.8e-294 1015.0 708 77.1
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 3.1e-293 1011.5 708 77.0
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 3.8e-291 1004.6 708 76.0
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 9.4e-290 1000.0 708 75.4
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 4.5e-276 954.5 709 74.9
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 9.4e-274 946.8 725 71.7
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 1.8e-272 942.6 725 71.4
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 2.0e-268 929.1 709 71.4
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 1.5e-263 912.9 703 70.8
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 2.0e-263 912.5 704 70.7
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 9.5e-258 893.6 707 68.9
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.4e-256 889.8 707 69.2
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 3.0e-256 888.6 704 69.2
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 2.0e-255 885.9 713 69.0
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 4.9e-254 881.3 678 70.1
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 1.2e-252 876.7 712 66.6
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 2.3e-251 872.5 731 65.7
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 2.8e-249 865.5 712 65.4
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 3.6e-249 865.1 706 67.0
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 8.0e-249 864.0 664 69.9
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.5e-247 859.8 712 65.3
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 9.2e-245 850.5 712 63.6
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-244 849.7 746 64.5
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 2.7e-244 849.0 704 64.6
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 3.5e-244 848.6 712 62.6
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 2.3e-243 845.9 708 65.7
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 5.0e-243 844.7 719 64.3
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 8.6e-243 844.0 708 64.8
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 1.9e-242 842.8 730 65.1
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 4.3e-242 841.6 712 63.8
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 7.3e-242 840.9 711 63.0
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 3.6e-241 838.6 711 62.6
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 1.4e-240 836.6 715 63.8
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 1.8e-240 836.3 712 62.6
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.8e-240 836.3 712 61.9
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.2e-239 833.6 712 61.8
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 1.3e-238 830.1 711 62.3
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.6e-236 821.6 712 61.1
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.0e-235 820.5 712 62.6
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.7e-235 819.7 706 63.5
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 3.0e-235 818.9 712 61.2
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 6.6e-235 817.8 711 63.4
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 8.6e-235 817.4 707 63.1
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 1.5e-234 816.6 704 62.9
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 5.6e-234 814.7 703 62.6
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.2e-233 813.5 713 62.6
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 8.9e-232 807.4 706 61.9
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 3.4e-231 805.4 712 61.0
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 7.6e-231 804.3 715 61.7
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 9.9e-231 803.9 712 62.1
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 1.7e-230 803.1 712 62.1
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 4.1e-229 798.5 711 62.2
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.7e-228 795.8 712 60.4
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 3.5e-228 795.4 715 61.4
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 6.0e-228 794.7 712 59.7
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.0e-227 793.9 712 59.8
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.7e-227 793.1 732 60.4
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 3.0e-227 792.3 738 59.3
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.5e-226 790.0 714 60.8
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 5.6e-226 788.1 711 60.3
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 1.2e-225 786.9 717 60.8
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.8e-225 785.8 734 60.4
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 8.1e-225 784.3 717 59.6
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.4e-224 783.5 664 63.3
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.8e-224 783.1 708 61.4
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 6.8e-224 781.2 712 60.7
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 5.8e-223 778.1 697 60.3
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.3e-222 776.9 712 60.4
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.4e-221 772.7 767 57.8
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 5.6e-218 761.5 712 59.1
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 5.6e-218 761.5 747 57.8
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 1.4e-216 756.9 711 58.9
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 5.8e-215 751.5 702 58.1
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 5.8e-215 751.5 708 57.9
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 3.8e-214 748.8 704 58.0
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 6.4e-214 748.0 714 58.5
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 1.2e-212 743.8 712 56.9
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.6e-212 743.4 713 57.6
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 7.9e-212 741.1 714 57.1
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 1.7e-211 740.0 707 57.4
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 8.7e-211 737.6 712 56.3
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 1.9e-210 736.5 712 57.7
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 3.6e-209 732.3 712 57.6
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.8e-208 729.9 699 57.1
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 5.3e-208 728.4 713 56.5
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 9.0e-208 727.6 712 56.3
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 1.5e-207 726.9 816 51.8
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 2.0e-207 726.5 712 56.5
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 7.6e-207 724.5 709 55.9
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 1.7e-206 723.4 706 56.2
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 2.2e-206 723.0 708 56.4
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.2e-205 719.2 643 60.5
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 3.2e-205 719.2 731 54.2
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 4.2e-205 718.8 708 56.1
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 3.5e-204 715.7 712 54.9
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 3.5e-204 715.7 664 57.7
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 6.0e-204 714.9 706 55.5
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 1.3e-203 713.8 706 55.8
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 6.7e-203 711.4 695 56.5
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.1e-202 710.7 664 57.2
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 8.1e-201 704.5 705 54.2
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 1.8e-200 703.4 705 55.0
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 5.3e-200 701.8 664 56.5
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 1.2e-199 700.7 730 55.6
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.5e-199 700.3 705 54.6
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.0e-199 699.9 705 55.5
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 1.7e-198 696.8 728 53.8
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 2.2e-198 696.4 705 55.3
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 1.1e-197 694.1 709 54.3
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.4e-197 693.7 714 54.1
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.3e-195 687.2 705 55.2
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 1.9e-194 683.3 658 55.6
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 3.7e-193 679.1 779 49.8
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 1.5e-191 673.7 674 54.9
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 2.0e-191 673.3 669 54.7
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 2.6e-191 672.9 690 55.2
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 5.9e-191 671.8 688 54.5
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 6.5e-190 668.3 645 56.7
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 2.5e-189 666.4 674 54.2
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 4.2e-189 665.6 663 56.9
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 6.1e-188 661.8 698 53.6
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.8e-187 660.2 627 57.4
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 3.9e-187 659.1 682 54.5
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 3.9e-187 659.1 682 54.5
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 3.3e-186 656.0 683 54.9
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.3e-186 656.0 708 51.7
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 7.4e-186 654.8 681 54.6
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 8.5e-182 641.3 645 56.3
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 2.1e-180 636.7 714 51.7
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 3.6e-172 609.4 728 48.6
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 2.8e-169 599.7 755 48.2
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 9.7e-162 574.7 764 46.5
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 8.2e-161 571.6 672 48.4
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 3.1e-160 569.7 569 56.1
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 4.2e-157 559.3 668 49.3
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 3.6e-148 529.6 715 46.0
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.2e-143 514.6 522 54.0
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 4.4e-138 496.1 549 50.5
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 3.0e-134 483.4 432 59.5
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 8.6e-126 455.3 718 40.4
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.5e-119 433.3 356 63.2
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 6.4e-113 412.5 447 55.5
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 7.1e-112 409.1 444 52.7
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 5.2e-107 392.9 321 65.7
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.5e-106 391.3 361 55.1
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.0e-94 352.1 379 54.4
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 3.3e-93 347.1 307 58.3
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 4.5e-82 310.1 421 44.2
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 5.8e-82 309.7 326 54.9
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 8.4e-81 305.8 521 38.8
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.0e-70 272.3 349 49.0
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 2.4e-67 261.2 385 43.1
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 2.9e-65 254.2 301 52.8
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 1.8e-62 245.0 583 32.9
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.9e-59 233.0 156 76.9
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.6e-55 221.9 309 45.6
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 7.5e-45 186.4 178 56.7
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 4.1e-43 180.6 118 78.8
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.2e-42 179.1 290 40.0
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 1.9e-40 171.8 115 80.9
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 2.9e-33 147.9 138 55.1
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-31 142.1 80 86.2
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-31 142.1 94 76.6
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.0e-30 137.9 671 24.0
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 5.2e-30 137.1 79 86.1
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.7e-28 132.1 195 42.6
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 7.0e-27 126.7 221 38.0
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 9.2e-27 126.3 68 94.1
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.5e-26 124.4 163 44.8
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.3e-25 121.7 209 39.2
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.9e-24 118.6 88 63.6
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 4.9e-20 104.0 155 42.6
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 9.2e-19 99.8 218 37.6
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 1.5e-16 92.4 199 38.2
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 2.1e-15 88.6 86 54.7
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 7.5e-13 80.1 104 41.3
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 3.7e-12 77.8 146 30.8
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 1.3e-09 69.3 52 67.3
arahy.Tifrunner.gnm1.ann1.TWLQ99 Arachis hypogaea HOM05D003718 ORTHO05D085526 6.8e-06 57.0 55 60.0


User provided reference genes

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