Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9195 Trifolium pratense HOM05D000015 ORTHO05D411410 2.3e-113 412.5 254 100.0
Medtr7g098630 Medicago truncatula HOM05D000015 ORTHO05D008807 3.2e-22 109.8 74 77.0
TPR.G20044 Trifolium pratense HOM05D000015 ORTHO05D008807 4.2e-22 109.4 74 77.0
Ca_08747_v3 Cicer arietinum L. HOM05D000015 ORTHO05D008807 5.4e-22 109.0 74 78.4
Lalb_Chr25g0289841 Lupinus albus HOM05D000015 ORTHO05D008807 1.6e-21 107.5 74 75.7
Lalb_Chr20g0113581 Lupinus albus HOM05D000015 ORTHO05D008807 1.3e-20 104.4 74 74.3
Glyma.19G168700 Glycine max HOM05D000015 ORTHO05D008807 3.0e-20 103.2 74 73.0
arahy.Tifrunner.gnm1.ann1.E4IV5Z Arachis hypogaea HOM05D000015 ORTHO05D008807 3.9e-20 102.8 74 71.6
Cpa.g.sc87.34 Carica papaya HOM05D000015 ORTHO05D008807 5.1e-20 102.4 74 70.3
VMungo1383G2418 Vigna mungo HOM05D000015 ORTHO05D008807 5.1e-20 102.4 74 71.6
Glyma.03G167600 Glycine max HOM05D000015 ORTHO05D008807 6.6e-20 102.1 74 71.6
arahy.Tifrunner.gnm1.ann1.M9IPMG Arachis hypogaea HOM05D000015 ORTHO05D008807 8.7e-20 101.7 74 70.3
Phvul.001G165266 Phaseolus vulgaris HOM05D000015 ORTHO05D008807 1.1e-19 101.3 74 71.6
Lj1g0004435 Lotus japonicus HOM05D000015 ORTHO05D008807 2.5e-19 100.1 74 70.3
Medtr7g097250 Medicago truncatula HOM05D000015 ORTHO05D008807 3.3e-19 99.8 69 78.3
Cc01_g17760 Coffea canephora HOM05D000015 ORTHO05D008807 7.3e-19 98.6 76 68.4
TAR362G0772 Trochodendron aralioides HOM05D000015 ORTHO05D008807 9.6e-19 98.2 74 70.3
Haze_24711 Corylus avellana HOM05D000015 ORTHO05D008807 1.6e-18 97.4 74 70.3
Eucgr.A01319 Eucalyptus grandis HOM05D000015 ORTHO05D008807 1.6e-18 97.4 74 70.3
CANSAT01G0298 Cannabis sativa HOM05D000015 ORTHO05D008807 3.6e-18 96.3 77 64.9
MBI10_g16815_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D008807 3.6e-18 96.3 74 71.6
TAR365G0336 Trochodendron aralioides HOM05D000015 ORTHO05D008807 4.8e-18 95.9 74 70.3
TAR365G0832 Trochodendron aralioides HOM05D000015 ORTHO05D008807 4.8e-18 95.9 74 70.3
Atru.chr5.1866 Acer truncatum HOM05D000015 ORTHO05D008807 8.1e-18 95.1 74 66.2
Cfa002489 Carpinus fangiana HOM05D000015 ORTHO05D008807 8.1e-18 95.1 74 68.9
Prupe.8G214900 Prunus persica HOM05D000015 ORTHO05D008807 8.1e-18 95.1 74 67.6
Sabra02G0194800 Salix brachista HOM05D000015 ORTHO05D008807 8.1e-18 95.1 74 66.2
MBI07_g08909_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D008807 1.1e-17 94.7 74 67.6
TWI18G0867 Tripterygium wilfordii HOM05D000015 ORTHO05D008807 1.1e-17 94.7 74 66.2
Dinv43065 Davidia involucrata HOM05D000015 ORTHO05D008807 1.4e-17 94.4 76 65.8
PSO832G4361 Papaver somniferum HOM05D000015 ORTHO05D008807 1.4e-17 94.4 74 67.6
CSS0000992 Camellia sinensis var. sinensis HOM05D000015 ORTHO05D008807 1.8e-17 94.0 74 68.9
Nn3g19802 Nelumbo nucifera HOM05D000015 ORTHO05D008807 1.8e-17 94.0 74 68.9
Peaxi162Scf00043g00254 Petunia axillaris HOM05D000015 ORTHO05D008807 1.8e-17 94.0 74 66.2
Solyc09g064490.3 Solanum lycopersicum HOM05D000015 ORTHO05D008807 1.8e-17 94.0 74 67.6
AUR62025436 Chenopodium quinoa HOM05D000015 ORTHO05D008807 2.4e-17 93.6 76 64.5
FAN15G0107 Fragaria x ananassa HOM05D000015 ORTHO05D008807 2.4e-17 93.6 74 68.9
FAN27G1195 Fragaria x ananassa HOM05D000015 ORTHO05D008807 2.4e-17 93.6 74 68.9
Nitab4.5_0002538g0080 Nicotiana tabacum HOM05D000015 ORTHO05D008807 2.4e-17 93.6 74 67.6
Peaxi162Scf00517g00033 Petunia axillaris HOM05D000015 ORTHO05D008807 2.4e-17 93.6 74 67.6
QL09p041561 Quercus lobata HOM05D000015 ORTHO05D008807 2.4e-17 93.6 74 68.9
Dinv19265 Davidia involucrata HOM05D000015 ORTHO05D008807 3.1e-17 93.2 74 67.6
Nitab4.5_0003167g0070 Nicotiana tabacum HOM05D000015 ORTHO05D008807 3.1e-17 93.2 74 67.6
Oeu026807.1 Olea europaea HOM05D000015 ORTHO05D008807 3.1e-17 93.2 74 67.6
Potri.014G193200 Populus trichocarpa HOM05D000015 ORTHO05D008807 3.1e-17 93.2 74 64.9
RcHm_v2.0_Chr6g0286551 Rosa chinensis HOM05D000015 ORTHO05D008807 3.1e-17 93.2 74 67.6
PGSC0003DMG400035001 Solanum tuberosum HOM05D000015 ORTHO05D008807 3.1e-17 93.2 74 64.9
EL10Ac7g17692 Beta vulgaris HOM05D000015 ORTHO05D008807 4.0e-17 92.8 76 63.2
AUR62008803 Chenopodium quinoa HOM05D000015 ORTHO05D008807 4.0e-17 92.8 76 64.5
FvH4_2g20460 Fragaria vesca HOM05D000015 ORTHO05D008807 4.0e-17 92.8 74 67.6
FAN24G0662 Fragaria x ananassa HOM05D000015 ORTHO05D008807 4.0e-17 92.8 74 67.6
Thecc.01G249700 Theobroma cacao HOM05D000015 ORTHO05D008807 5.3e-17 92.4 102 52.9
COL.COLO4_10206 Corchorus olitorius HOM05D000015 ORTHO05D008807 6.9e-17 92.0 102 53.9
Migut.D00480 Erythranthe guttata HOM05D000015 ORTHO05D008807 6.9e-17 92.0 74 68.9
Manes.13G039400 Manihot esculenta HOM05D000015 ORTHO05D008807 6.9e-17 92.0 74 64.9
Sopen09g025640 Solanum pennellii HOM05D000015 ORTHO05D008807 6.9e-17 92.0 74 66.2
GSVIVG01028435001 Vitis vinifera HOM05D000015 ORTHO05D008807 6.9e-17 92.0 74 64.9
CAN.G771.42 Capsicum annuum HOM05D000015 ORTHO05D008807 9.0e-17 91.7 74 66.2
Lj1C74T14 Lonicera japonica HOM05D000015 ORTHO05D008807 9.0e-17 91.7 74 64.9
MD05G1188400 Malus domestica HOM05D000015 ORTHO05D008807 9.0e-17 91.7 74 66.2
SalBow4G2501 Salvia bowleyana HOM05D000015 ORTHO05D008807 9.0e-17 91.7 74 66.2
CAN.G536.10 Capsicum annuum HOM05D000015 ORTHO05D008807 1.2e-16 91.3 74 64.9
HanXRQChr01g0014961 Helianthus annuus HOM05D000015 ORTHO05D008807 1.5e-16 90.9 74 63.5
MD10G1175900 Malus domestica HOM05D000015 ORTHO05D008807 1.5e-16 90.9 76 63.2
Aa31LG1G20730 Aethionema arabicum HOM05D000015 ORTHO05D008807 2.0e-16 90.5 74 62.2
Lsat_1_v5_gn_5_181140 Lactuca sativa HOM05D000015 ORTHO05D008807 2.0e-16 90.5 74 63.5
Rhsim01G0260200 Rhododendron simsii HOM05D000015 ORTHO05D008807 2.0e-16 90.5 74 62.2
Solyc06g083720.2 Solanum lycopersicum HOM05D000015 ORTHO05D008807 2.0e-16 90.5 74 64.9
ECA248G2024 Erigeron canadensis HOM05D000015 ORTHO05D008807 2.6e-16 90.1 74 63.5
Duzib133G1451 Durio zibethinus HOM05D000015 ORTHO05D008807 3.4e-16 89.7 102 52.0
Potri.002G256300 Populus trichocarpa HOM05D000015 ORTHO05D008807 3.4e-16 89.7 74 60.8
DCAR_004693 Daucus carota HOM05D000015 ORTHO05D008807 4.5e-16 89.4 74 64.9
Manes.12G038101 Manihot esculenta HOM05D000015 ORTHO05D008807 4.5e-16 89.4 74 62.2
Nitab4.5_0000845g0200 Nicotiana tabacum HOM05D000015 ORTHO05D008807 4.5e-16 89.4 74 63.5
Aqoxy5G00129 Aquilegia oxysepala HOM05D000015 ORTHO05D008807 5.8e-16 89.0 65 70.8
DCAR_000569 Daucus carota HOM05D000015 ORTHO05D008807 5.8e-16 89.0 74 64.9
Duzib138G1314 Durio zibethinus HOM05D000015 ORTHO05D008807 5.8e-16 89.0 102 51.0
PGR031G2260 Punica granatum HOM05D000015 ORTHO05D008807 7.6e-16 88.6 74 64.9
Sopen06g035140 Solanum pennellii HOM05D000015 ORTHO05D008807 7.6e-16 88.6 74 63.5
SGA_v2.0_scaffold1G00661 Striga asiatica HOM05D000015 ORTHO05D008807 7.6e-16 88.6 75 65.3
MELO3C012837.2 Cucumis melo HOM05D000015 ORTHO05D008807 9.9e-16 88.2 74 62.2
DCAR_004723 Daucus carota HOM05D000015 ORTHO05D008807 9.9e-16 88.2 74 63.5
Sed0021046 Sechium edule HOM05D000015 ORTHO05D008807 9.9e-16 88.2 74 62.2
Sc05g0002890 Simmondsia chinensis HOM05D000015 ORTHO05D008807 9.9e-16 88.2 76 63.2
Ah.08g213620 Amaranthus hybridus HOM05D000015 ORTHO05D008807 1.7e-15 87.4 76 57.9
Gohir.A07G152800 Gossypium hirsutum HOM05D000015 ORTHO05D008807 1.7e-15 87.4 102 51.0
Os03g0143100 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D008807 1.7e-15 87.4 74 59.5
THA.LOC104827375 Tarenaya hassleriana HOM05D000015 ORTHO05D008807 2.2e-15 87.0 74 60.8
AT1G04110 Arabidopsis thaliana HOM05D000015 ORTHO05D008807 2.9e-15 86.7 74 58.1
CsaV3_3G028410 Cucumis sativus L. HOM05D000015 ORTHO05D008807 2.9e-15 86.7 74 60.8
AL1G13710 Arabidopsis lyrata HOM05D000015 ORTHO05D008807 3.8e-15 86.3 74 58.1
Carub.0001s0326 Capsella rubella HOM05D000015 ORTHO05D008807 3.8e-15 86.3 74 58.1
Thhalv10006861m.g Eutrema salsugineum HOM05D000015 ORTHO05D008807 4.9e-15 85.9 74 59.5
Sp1g02930 Schrenkiella parvula HOM05D000015 ORTHO05D008807 4.9e-15 85.9 74 58.1
Zm00001eb003520 Zea mays HOM05D000015 ORTHO05D008807 4.9e-15 85.9 74 58.1
Nitab4.5_0002435g0020 Nicotiana tabacum HOM05D000015 ORTHO05D008807 6.4e-15 85.5 74 62.2
BcaC05g24469 Brassica carinata HOM05D000015 ORTHO05D008807 8.4e-15 85.1 74 56.8
ClCG00G001640 Citrullus lanatus HOM05D000015 ORTHO05D008807 8.4e-15 85.1 74 59.5
ClCG07G001410 Citrullus lanatus HOM05D000015 ORTHO05D008807 8.4e-15 85.1 74 59.5
BcaC05g24470 Brassica carinata HOM05D000015 ORTHO05D008807 1.1e-14 84.7 74 56.8
A10p02570 Brassica napus HOM05D000015 ORTHO05D008807 1.1e-14 84.7 74 56.8
C05p02370 Brassica napus HOM05D000015 ORTHO05D008807 1.1e-14 84.7 74 56.8
BraA10t42526Z Brassica rapa HOM05D000015 ORTHO05D008807 1.1e-14 84.7 74 56.8
BolC5t29016H Brassica oleracea HOM05D000015 ORTHO05D008807 1.4e-14 84.3 74 56.8
Gohir.D07G159050 Gossypium hirsutum HOM05D000015 ORTHO05D008807 1.4e-14 84.3 102 50.0
Gorai.001G182200 Gossypium raimondii HOM05D000015 ORTHO05D008807 1.4e-14 84.3 102 50.0
Sed0015797 Sechium edule HOM05D000015 ORTHO05D008807 1.9e-14 84.0 74 59.5
Actinidia09512 Actinidia chinensis HOM05D000015 ORTHO05D008807 2.4e-14 83.6 74 60.8
CARHR003450 Cardamine hirsuta HOM05D000015 ORTHO05D008807 4.2e-14 82.8 74 55.4
TPR.G31883 Trifolium pratense HOM05D007378 ORTHO05D007577 1.8e-12 77.4 43 81.4
ATR0787G216 Amborella trichopoda HOM05D000015 ORTHO05D008807 1.9e-11 73.9 75 54.7
Ca_20235_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000803 6.9e-09 65.5 76 50.0
Glyma.17G133400 Glycine max HOM05D000015 ORTHO05D000803 3.4e-08 63.2 76 50.0
Glyma.17G133500 Glycine max HOM05D000015 ORTHO05D000803 3.4e-08 63.2 76 50.0
Phvul.003G214100 Phaseolus vulgaris HOM05D000015 ORTHO05D000803 3.4e-08 63.2 76 48.7
TPR.G37691 Trifolium pratense HOM05D000015 ORTHO05D000803 4.5e-08 62.8 76 48.7
Lj4g0016652 Lotus japonicus HOM05D000015 ORTHO05D000803 5.8e-08 62.4 76 48.7
TAR636G1906 Trochodendron aralioides HOM05D000015 ORTHO05D000803 7.6e-08 62.0 77 44.2
SEGI_17710 Sequoiadendron giganteum HOM05D000015 ORTHO05D000249 9.9e-08 61.6 74 44.6
Eucgr.D01951 Eucalyptus grandis HOM05D000015 ORTHO05D000803 1.7e-07 60.8 74 45.9
HanXRQChr13g0418121 Helianthus annuus HOM05D000015 ORTHO05D000803 2.2e-07 60.5 74 47.3
HanXRQChr13g0419211 Helianthus annuus HOM05D000015 ORTHO05D000803 2.2e-07 60.5 74 45.9
HanXRQChr13g0419231 Helianthus annuus HOM05D000015 ORTHO05D000803 2.2e-07 60.5 74 47.3
Prupe.5G086100 Prunus persica HOM05D000015 ORTHO05D000803 2.2e-07 60.5 74 51.4
Cpa.g.sc29.44 Carica papaya HOM05D000015 ORTHO05D000803 2.9e-07 60.1 74 48.6
Migut.A00891 Erythranthe guttata HOM05D000015 ORTHO05D000803 2.9e-07 60.1 74 47.3
Medtr4g102400 Medicago truncatula HOM05D000015 ORTHO05D000803 2.9e-07 60.1 76 50.0
HanXRQChr13g0419221 Helianthus annuus HOM05D000015 ORTHO05D000803 3.8e-07 59.7 74 45.9
MSTRG.25609 Avicennia marina HOM05D000015 ORTHO05D000803 4.9e-07 59.3 74 45.9
Migut.A00887 Erythranthe guttata HOM05D000015 ORTHO05D000803 4.9e-07 59.3 74 45.9
PGR031G1576 Punica granatum HOM05D000015 ORTHO05D000803 4.9e-07 59.3 74 47.3
Aqoxy7G00526 Aquilegia oxysepala HOM05D000015 ORTHO05D000803 6.4e-07 58.9 74 43.2
Eucgr.D01954 Eucalyptus grandis HOM05D000015 ORTHO05D000803 6.4e-07 58.9 74 45.9
Glyma.05G051400 Glycine max HOM05D000015 ORTHO05D000803 6.4e-07 58.9 76 47.4
Migut.E01661 Erythranthe guttata HOM05D000015 ORTHO05D000803 8.4e-07 58.5 74 41.9
Eucgr.D02072 Eucalyptus grandis HOM05D000015 ORTHO05D000803 8.4e-07 58.5 74 45.9
SalBow6G3762 Salvia bowleyana HOM05D000015 ORTHO05D000803 8.4e-07 58.5 74 44.6
DCAR_000887 Daucus carota HOM05D000015 ORTHO05D000803 1.1e-06 58.2 74 45.9
Migut.A00889 Erythranthe guttata HOM05D000015 ORTHO05D000803 1.1e-06 58.2 74 43.2
Lalb_Chr16g0389671 Lupinus albus HOM05D000015 ORTHO05D000803 1.1e-06 58.2 76 47.4
MD00G1069500 Malus domestica HOM05D000015 ORTHO05D000803 1.1e-06 58.2 76 46.1
SalBow6G1851 Salvia bowleyana HOM05D000015 ORTHO05D000803 1.1e-06 58.2 74 48.6
Ciclev10023558m.g Citrus clementina HOM05D000015 ORTHO05D000803 1.4e-06 57.8 74 48.6
Cc02_g37040 Coffea canephora HOM05D000015 ORTHO05D000249 1.4e-06 57.8 74 43.2
DCAR_005668 Daucus carota HOM05D000015 ORTHO05D000803 1.4e-06 57.8 74 45.9
SalBow6G4802 Salvia bowleyana HOM05D000015 ORTHO05D000803 1.4e-06 57.8 74 47.3
TAR627G0921 Trochodendron aralioides HOM05D000015 ORTHO05D004138 1.4e-06 57.8 76 42.1
ATR0757G097 Amborella trichopoda HOM05D000015 ORTHO05D000803 1.9e-06 57.4 77 44.2
ATR0757G193 Amborella trichopoda HOM05D000015 ORTHO05D000803 1.9e-06 57.4 77 42.9
Migut.A00881 Erythranthe guttata HOM05D000015 ORTHO05D000803 1.9e-06 57.4 74 45.9
FAN08G0617 Fragaria x ananassa HOM05D000015 ORTHO05D000803 1.9e-06 57.4 75 48.0
TPR.G19594 Trifolium pratense HOM05D000015 ORTHO05D000803 1.9e-06 57.4 74 45.9
Cc08_g12680 Coffea canephora HOM05D000015 ORTHO05D000803 2.4e-06 57.0 79 44.3
Migut.A00886 Erythranthe guttata HOM05D000015 ORTHO05D000803 2.4e-06 57.0 74 43.2
Gohir.A08G176100 Gossypium hirsutum HOM05D000015 ORTHO05D000803 2.4e-06 57.0 74 44.6
Lsat_1_v5_gn_6_94201 Lactuca sativa HOM05D000015 ORTHO05D000803 2.4e-06 57.0 74 39.2
Nitab4.5_0007587g0010 Nicotiana tabacum HOM05D000015 ORTHO05D000803 2.4e-06 57.0 74 44.6
ECA240G2220 Erigeron canadensis HOM05D000015 ORTHO05D000803 3.2e-06 56.6 74 44.6
Peaxi162Scf00620g00418 Petunia axillaris HOM05D000015 ORTHO05D000803 3.2e-06 56.6 74 45.9
Migut.A00885 Erythranthe guttata HOM05D000015 ORTHO05D000803 4.2e-06 56.2 74 44.6
Migut.E01147 Erythranthe guttata HOM05D000015 ORTHO05D000803 4.2e-06 56.2 74 40.5
Gohir.D08G194900 Gossypium hirsutum HOM05D000015 ORTHO05D000803 4.2e-06 56.2 74 44.6
Gorai.004G205600 Gossypium raimondii HOM05D000015 ORTHO05D000803 4.2e-06 56.2 74 44.6
Peaxi162Scf00038g00062 Petunia axillaris HOM05D000015 ORTHO05D000803 4.2e-06 56.2 74 44.6
RcHm_v2.0_Chr7g0200061 Rosa chinensis HOM05D000015 ORTHO05D000803 4.2e-06 56.2 76 43.4
RcHm_v2.0_Chr7g0200151 Rosa chinensis HOM05D000015 ORTHO05D000803 4.2e-06 56.2 76 43.4
SEGI_14918 Sequoiadendron giganteum HOM05D000015 ORTHO05D000249 4.2e-06 56.2 74 43.2
HanXRQChr03g0087511 Helianthus annuus HOM05D000015 ORTHO05D000803 5.5e-06 55.8 76 40.8
Lsat_1_v5_gn_6_91420 Lactuca sativa HOM05D000015 ORTHO05D000803 5.5e-06 55.8 74 39.2
Lsat_1_v5_gn_6_96200 Lactuca sativa HOM05D000015 ORTHO05D000803 5.5e-06 55.8 74 41.9
Lj8P247T7 Lonicera japonica HOM05D000015 ORTHO05D000803 5.5e-06 55.8 74 41.9
Lj8P250T8 Lonicera japonica HOM05D000015 ORTHO05D000803 5.5e-06 55.8 74 41.9
MBI06_g14252_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D004138 5.5e-06 55.8 76 43.4
Cpa.g.sc29.46 Carica papaya HOM05D000015 ORTHO05D000803 7.1e-06 55.5 79 40.5
Oeu048757.1 Olea europaea HOM05D000015 ORTHO05D000803 7.1e-06 55.5 84 40.5
Sopen08g028370 Solanum pennellii HOM05D000015 ORTHO05D000803 7.1e-06 55.5 74 43.2
TAR626G1327 Trochodendron aralioides HOM05D000015 ORTHO05D004138 7.1e-06 55.5 76 42.1
Migut.E01037 Erythranthe guttata HOM05D000015 ORTHO05D000803 9.3e-06 55.1 74 40.5
FvH4_5g01120 Fragaria vesca HOM05D000015 ORTHO05D000803 9.3e-06 55.1 74 47.3
FAN13G3257 Fragaria x ananassa HOM05D000015 ORTHO05D000803 9.3e-06 55.1 74 47.3
FAN18G2169 Fragaria x ananassa HOM05D000015 ORTHO05D000803 9.3e-06 55.1 74 47.3
MBI12_g43133_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D000803 9.3e-06 55.1 74 41.9
Oeu015896.1 Olea europaea HOM05D000015 ORTHO05D000803 9.3e-06 55.1 99 39.4
Solyc08g080010.1 Solanum lycopersicum HOM05D000015 ORTHO05D000803 9.3e-06 55.1 74 43.2


User provided reference genes

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