Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1362.1 643 100.0
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1299.6 633 95.4
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1273.5 633 92.9
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1222.2 650 88.3
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1215.7 633 88.6
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 0.0e+00 1208.0 605 93.1
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1197.6 647 86.4
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1193.7 637 85.6
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 0.0e+00 1192.9 634 87.9
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1184.5 634 86.4
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1178.7 637 84.9
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1165.6 606 88.8
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1151.7 612 86.6
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1136.7 626 83.1
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1135.2 604 86.1
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1134.4 604 85.4
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1129.4 625 83.5
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1128.2 628 83.0
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1124.4 604 84.9
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1122.8 623 82.0
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1122.1 624 83.2
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1117.8 612 84.2
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1117.8 604 84.3
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1117.1 623 81.9
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1116.3 643 81.5
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1115.5 649 79.7
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1114.0 632 80.7
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1114.0 634 79.3
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1112.8 601 82.9
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1111.7 631 81.9
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1107.0 625 81.3
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1107.0 627 81.7
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1107.0 625 81.3
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1106.7 612 81.2
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1104.4 604 84.1
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 0.0e+00 1104.4 601 83.5
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1102.4 604 83.9
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1102.0 614 82.2
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1096.6 629 80.4
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1095.9 615 81.5
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 0.0e+00 1094.7 630 80.3
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1092.0 625 80.6
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1087.4 642 79.1
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1086.6 618 79.9
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 0.0e+00 1085.9 638 79.2
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1085.1 643 79.6
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1082.4 604 82.1
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1080.9 645 76.9
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 0.0e+00 1079.7 626 79.6
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 0.0e+00 1079.7 626 79.2
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1079.3 610 80.3
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 0.0e+00 1078.5 604 82.5
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 0.0e+00 1075.5 577 85.6
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 4.4e-312 1074.7 632 78.5
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 2.2e-311 1071.6 757 69.0
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 5.7e-310 1067.0 606 79.9
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 7.4e-310 1066.6 628 77.1
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 2.2e-309 1065.1 624 77.2
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 3.7e-309 1064.3 606 79.5
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 1.8e-308 1062.0 611 79.9
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 2.4e-308 1061.6 630 77.3
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 2.4e-308 1061.6 632 77.1
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 4.1e-308 1060.8 632 76.7
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 4.1e-308 1060.8 632 76.7
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 5.3e-308 1060.4 605 78.8
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 5.3e-308 1060.4 605 78.8
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 6.9e-308 1060.1 625 78.6
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 7.7e-307 1056.6 633 76.5
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 1.7e-306 1055.4 624 77.2
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 2.9e-306 1054.7 630 76.5
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.9e-306 1054.7 732 69.3
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 5.0e-306 1053.9 605 79.5
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 1.4e-305 1052.4 595 79.7
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 9.4e-305 1049.7 633 76.1
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 1.2e-304 1049.3 629 76.0
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 3.3e-302 1041.2 673 73.1
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.8e-300 1035.4 623 76.7
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 3.5e-299 1031.2 830 60.7
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.4e-295 1019.2 660 73.0
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 8.2e-293 1010.0 556 83.6
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.4e-292 1008.4 660 72.6
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 4.1e-292 1007.7 630 75.9
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 5.0e-290 1000.7 629 73.1
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 1.3e-285 986.1 625 73.9
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 1.6e-280 969.1 561 80.4
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 2.7e-280 968.4 602 74.8
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 2.8e-277 958.4 515 85.6
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 4.8e-277 957.6 513 85.6
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 2.1e-272 942.2 575 76.9
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 1.2e-270 936.4 544 79.6
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.4e-270 934.5 513 84.4
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 2.4e-268 928.7 549 77.0
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.7e-267 925.2 558 77.4
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 5.6e-265 917.5 586 74.1
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 8.9e-263 910.2 571 74.1
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.4e-260 902.9 628 68.8
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.7e-258 896.0 601 71.4
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 3.6e-256 888.3 638 67.2
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.1e-243 845.9 601 68.1
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 5.6e-241 837.8 622 62.5
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 4.4e-238 828.2 632 61.4
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 6.2e-232 807.7 636 60.4
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 4.8e-224 781.6 491 73.1
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.2e-221 772.7 602 59.3
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 3.1e-215 752.3 556 62.9
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 7.9e-211 737.6 453 77.3
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 3.3e-201 705.7 413 78.5
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 2.9e-189 666.0 457 69.4
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 3.3e-185 652.5 381 78.7
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 1.1e-180 637.5 415 72.3
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 1.8e-178 630.2 351 83.2
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 1.1e-127 461.5 246 82.9
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 1.9e-124 450.7 463 52.9
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 1.9e-116 424.1 253 79.8
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.2e-86 325.1 193 75.6
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.6e-81 307.4 188 72.9
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 8.5e-80 302.4 163 87.1
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 6.5e-72 276.2 208 65.4
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 2.0e-60 238.0 134 79.1
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 5.7e-60 236.5 122 86.1
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 2.0e-49 201.4 155 60.6
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 5.9e-49 199.9 340 36.2
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.9e-48 197.6 160 57.5
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 2.0e-44 184.9 105 80.0
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 4.1e-42 177.2 105 74.3
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.2e-41 175.6 83 91.6
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.7e-33 147.9 103 72.8
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 7.3e-31 139.8 87 72.4
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.9e-29 132.9 148 50.0
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.2e-28 132.5 87 70.1
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.2e-28 132.5 87 70.1
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 4.4e-28 130.6 211 36.5
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.1e-26 125.9 66 84.8
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 2.1e-22 111.7 51 94.1
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 6.2e-22 110.2 225 29.8
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.4e-21 109.0 82 68.3
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.5e-20 105.5 78 64.1
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.4e-20 104.4 55 81.8
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.4e-20 104.4 55 81.8
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.9e-19 101.3 78 61.5
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 3.7e-19 100.9 79 67.1
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 6.4e-19 100.1 205 29.3
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 8.3e-19 99.8 70 71.4
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 5.4e-18 97.1 138 41.3
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.3e-16 92.4 73 61.6
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.3e-16 92.4 73 61.6
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 3.9e-16 90.9 208 25.5
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.5e-15 89.0 79 55.7
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 6.2e-14 83.6 63 61.9
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 7.3e-07 60.1 32 65.6
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.6e-06 58.9 263 26.6
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.6e-06 58.9 263 26.6


User provided reference genes

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