Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 0.0e+00 1252.3 633 100.0
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 8.9e-308 1059.7 631 86.7
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 1.8e-292 1008.8 596 85.1
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 7.4e-270 933.7 619 77.7
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 3.7e-261 904.8 625 74.4
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 7.7e-259 897.1 620 73.7
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 2.3e-218 762.7 634 63.2
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 5.6e-217 758.1 631 67.2
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 7.2e-217 757.7 600 69.7
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 9.5e-217 757.3 622 63.5
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.4e-207 726.9 619 61.2
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 1.8e-207 726.5 625 61.4
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 8.9e-207 724.2 624 62.8
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 5.8e-206 721.5 517 72.1
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 1.1e-204 717.2 600 62.5
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 3.2e-204 715.7 639 60.4
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 5.4e-204 714.9 629 61.7
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 7.0e-204 714.5 626 60.9
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 9.2e-204 714.1 619 62.4
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 7.8e-203 711.1 633 61.5
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 2.3e-202 709.5 621 61.4
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 1.5e-201 706.8 592 63.3
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 2.5e-201 706.1 637 59.7
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.5e-201 704.1 615 62.6
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 1.2e-200 703.7 622 60.8
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-200 703.0 615 62.4
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 2.8e-200 702.6 642 59.2
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 1.4e-199 700.3 422 82.0
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 1.4e-199 700.3 626 59.9
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.8e-199 699.9 618 62.6
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 4.0e-199 698.7 593 62.6
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 3.4e-198 695.7 503 69.8
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 9.8e-198 694.1 618 59.9
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 4.9e-197 691.8 600 61.8
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 1.6e-195 686.8 623 59.4
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-195 686.4 623 60.2
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-195 684.9 604 62.3
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 1.2e-192 677.2 614 58.0
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 2.8e-192 676.0 620 56.5
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 3.6e-192 675.6 529 65.6
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 8.1e-192 674.5 618 58.6
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 1.4e-191 673.7 602 59.8
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.4e-191 673.7 621 58.9
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 3.1e-191 672.5 610 57.7
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 1.2e-190 670.6 621 54.8
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 2.6e-190 669.5 584 60.8
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 7.6e-190 667.9 457 74.2
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 3.7e-189 665.6 520 65.0
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 8.4e-189 664.5 583 58.7
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 1.4e-188 663.7 599 59.9
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 5.4e-188 661.8 636 56.3
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 5.4e-188 661.8 619 56.5
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 9.2e-188 661.0 582 60.3
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 9.2e-188 661.0 617 57.9
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.6e-187 660.2 618 57.6
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 1.3e-186 657.1 619 55.6
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 2.5e-185 652.9 600 57.3
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 3.3e-185 652.5 600 56.5
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 4.7e-184 648.7 608 57.6
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 1.1e-183 647.5 617 56.2
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.1e-183 647.5 619 57.8
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 1.1e-183 647.5 617 57.5
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 1.1e-183 647.5 603 54.6
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 3.1e-183 646.0 614 56.0
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 6.8e-183 644.8 579 59.1
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.0e-182 643.3 629 56.0
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 4.4e-182 642.1 521 63.1
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 4.9e-181 638.6 614 56.2
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 4.9e-181 638.6 621 58.5
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 8.4e-181 637.9 604 56.5
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 2.4e-180 636.3 612 55.2
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 3.2e-180 636.0 617 56.2
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 3.2e-180 636.0 614 56.0
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 5.4e-180 635.2 615 55.6
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 9.3e-180 634.4 619 56.7
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 1.0e-178 630.9 595 55.6
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 3.6e-176 622.5 623 54.9
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 1.8e-175 620.2 665 51.3
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 2.6e-174 616.3 480 66.0
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 4.4e-174 615.5 615 55.3
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 1.7e-173 613.6 601 55.9
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.9e-173 612.8 629 56.6
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 3.2e-172 609.4 624 54.5
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 1.2e-171 607.4 511 61.1
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 2.3e-170 603.2 663 48.7
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 1.6e-168 597.0 502 63.7
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 4.0e-167 592.4 521 59.5
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 3.9e-162 575.9 591 52.3
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 7.4e-161 571.6 582 54.0
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 9.0e-159 564.7 561 54.9
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 1.2e-158 564.3 600 51.5
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 7.9e-155 551.6 471 61.6
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 2.5e-153 546.6 580 50.5
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 1.5e-150 537.3 472 57.0
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 3.8e-149 532.7 486 55.8
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 4.6e-147 525.8 449 60.1
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 7.9e-147 525.0 516 53.7
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 2.0e-126 457.2 627 42.3
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 5.9e-126 455.7 354 64.4
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 3.1e-119 433.3 616 40.4
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 5.3e-119 432.6 591 42.0
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 3.5e-118 429.9 371 60.6
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 1.6e-115 421.0 295 72.9
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 4.1e-111 406.4 348 59.8
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 2.8e-104 383.6 288 69.8
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.3e-96 358.2 407 45.5
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 6.4e-96 355.9 451 41.9
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 2.0e-89 334.3 317 57.4
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 7.8e-70 269.2 334 43.7
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 1.0e-69 268.9 219 58.4
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 1.5e-65 255.0 399 38.3
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.4e-63 247.7 161 73.3
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.4e-63 247.7 161 73.3
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.4e-63 247.7 161 73.3
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.4e-63 247.7 161 73.3
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.6e-62 245.0 183 62.8
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 1.3e-61 241.9 265 50.2
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 2.0e-57 228.0 155 65.2
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.6e-51 208.4 218 50.9
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 6.2e-51 206.5 198 56.6
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 1.3e-48 198.7 133 82.7
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 3.8e-48 197.2 239 50.6
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 6.9e-42 176.4 229 44.5
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 5.5e-39 166.8 146 58.9
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.6e-38 165.2 176 44.9
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 3.5e-38 164.1 443 30.5
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 2.0e-33 148.3 244 38.9
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.0e-32 143.7 161 50.3
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 6.1e-30 136.7 365 29.3
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 7.4e-28 129.8 227 35.7
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 2.8e-27 127.9 89 64.0
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 4.8e-27 127.1 170 46.5
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 2.6e-25 121.3 172 39.5
Psat7g022520 Pisum sativum HOM05D024525 ORTHO05D005308 7.4e-20 103.2 79 75.9
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 9.7e-20 102.8 149 43.6
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 2.2e-19 101.7 92 63.0
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 2.4e-18 98.2 73 78.1
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 5.3e-18 97.1 144 39.6
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 7.7e-17 93.2 150 36.7
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.9e-15 88.6 45 86.7
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 3.2e-15 87.8 162 37.0
Psat2g076120 Pisum sativum HOM05D024525 ORTHO05D005308 9.4e-15 86.3 65 73.8
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 1.8e-13 82.0 120 40.0
Psat0s1616g0080 Pisum sativum HOM05D024525 ORTHO05D005308 6.7e-13 80.1 52 80.8
Psat5g117880 Pisum sativum HOM05D024525 ORTHO05D005308 1.5e-12 79.0 43 86.0
Psat2g119320 Pisum sativum HOM05D024525 ORTHO05D005308 2.8e-11 74.7 52 75.0
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 2.2e-08 65.1 115 33.0
MBI04_g15062_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 2.9e-08 64.7 159 34.6
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 8.5e-08 63.2 60 40.0
FAN01G2746 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.7e-06 57.4 54 51.9


User provided reference genes

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