Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 5.6e-133 477.6 243 100.0
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 6.2e-116 421.0 243 88.5
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 1.2e-111 406.8 239 87.0
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 2.4e-96 355.9 245 75.5
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 3.2e-96 355.5 244 76.6
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 2.4e-91 339.3 246 73.6
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 1.5e-90 336.7 245 71.8
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 5.8e-90 334.7 245 71.8
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 1.1e-88 330.5 243 72.8
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 1.4e-88 330.1 245 71.4
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 1.9e-88 329.7 242 72.7
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 2.7e-87 325.9 238 73.5
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 1.1e-80 303.9 247 69.2
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 1.4e-80 303.5 245 64.9
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 1.9e-80 303.1 238 66.8
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 3.2e-80 302.4 246 64.2
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 9.3e-80 300.8 243 66.3
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 7.9e-79 297.7 244 65.2
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 4.3e-77 292.0 241 64.3
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 9.6e-77 290.8 244 64.3
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 1.3e-76 290.4 241 64.3
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 3.1e-75 285.8 241 63.5
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 3.1e-75 285.8 241 63.9
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 4.0e-75 285.4 244 63.9
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 6.9e-75 284.6 241 63.1
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 6.9e-75 284.6 245 63.7
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 1.2e-74 283.9 248 60.9
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.0e-74 283.1 241 63.1
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 3.4e-74 282.3 246 60.6
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 5.8e-74 281.6 247 64.8
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.0e-73 280.8 241 61.8
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 1.3e-73 280.4 244 61.1
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 1.7e-73 280.0 241 60.6
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 1.7e-73 280.0 243 62.6
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 2.2e-73 279.6 245 60.4
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 2.9e-73 279.3 193 73.1
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 6.5e-73 278.1 244 61.5
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 8.4e-73 277.7 241 62.2
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 1.1e-72 277.3 244 60.2
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 1.4e-72 276.9 239 61.9
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 3.2e-72 275.8 238 61.8
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 3.2e-72 275.8 243 60.5
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 5.5e-72 275.0 239 64.0
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 5.5e-72 275.0 245 60.8
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 5.5e-72 275.0 255 58.8
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 9.3e-72 274.2 191 70.7
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 1.6e-71 273.5 241 59.8
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 2.7e-71 272.7 255 60.0
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 4.6e-71 271.9 246 59.8
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 6.1e-71 271.6 240 60.0
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 7.9e-71 271.2 251 60.2
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.3e-70 270.4 251 60.2
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 1.8e-70 270.0 258 58.5
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 5.1e-70 268.5 255 56.9
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 8.7e-70 267.7 210 66.7
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 2.5e-69 266.2 243 59.7
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 5.7e-69 265.0 239 59.4
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 5.7e-69 265.0 252 57.1
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 2.2e-68 263.1 230 60.4
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 2.2e-68 263.1 208 64.9
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 8.2e-68 261.2 246 56.5
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 5.3e-67 258.5 239 56.9
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 1.2e-66 257.3 191 67.5
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 1.5e-66 256.9 221 58.4
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 1.5e-66 256.9 250 55.2
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 4.5e-66 255.4 214 60.3
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 5.9e-66 255.0 250 55.6
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 5.0e-65 251.9 253 54.5
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 8.5e-65 251.1 246 54.5
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 1.1e-64 250.8 246 54.5
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 2.3e-62 243.0 204 59.3
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 3.9e-62 242.3 191 65.4
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 6.7e-62 241.5 256 52.7
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 1.5e-61 240.4 223 57.8
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 4.3e-61 238.8 223 57.4
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 4.3e-61 238.8 223 57.4
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 7.4e-61 238.0 223 57.8
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 2.2e-60 236.5 223 56.5
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 3.7e-60 235.7 239 50.2
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 4.8e-60 235.3 244 52.9
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 6.3e-60 235.0 187 63.1
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 2.4e-59 233.0 213 59.2
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 2.4e-59 233.0 231 55.4
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 2.4e-59 233.0 225 48.9
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 3.1e-59 232.6 222 58.6
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 6.9e-59 231.5 171 67.8
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 6.9e-59 231.5 212 59.0
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 9.1e-59 231.1 213 58.2
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 9.1e-59 231.1 211 58.8
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 7.7e-58 228.0 211 56.9
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 1.7e-57 226.9 188 64.4
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 3.9e-54 215.7 239 51.5
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 2.6e-53 213.0 144 73.6
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 3.7e-52 209.1 141 71.6
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 5.5e-48 195.3 179 52.0
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 2.1e-47 193.4 194 50.5
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 3.9e-46 189.1 176 50.6
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 2.2e-44 183.3 186 48.4
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 1.8e-43 180.3 244 45.5
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 3.1e-43 179.5 192 45.8
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 5.3e-43 178.7 206 49.0
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.6e-42 177.2 238 42.0
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 5.0e-41 172.2 215 46.0
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 5.0e-41 172.2 195 46.7
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 3.2e-40 169.5 181 48.1
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 3.1e-35 152.9 175 53.1
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 5.2e-30 135.6 88 73.9
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.2e-29 134.4 212 37.3
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 5.7e-29 132.1 142 52.8
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 3.1e-27 126.3 83 74.7
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 2.0e-26 123.6 154 46.1
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 5.5e-24 115.5 174 39.1
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 2.9e-17 93.2 67 67.2
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 8.6e-17 91.7 95 49.5
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 3.6e-15 86.3 97 43.3
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 1.8e-14 84.0 203 31.0
arahy.Tifrunner.gnm1.ann1.3M52EB Arachis hypogaea HOM05D007174 ORTHO05D010441 2.3e-09 67.0 46 71.7
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 5.0e-09 65.9 78 47.4
Oeu004139.1 Olea europaea HOM05D007174 ORTHO05D009061 1.4e-06 57.8 103 39.8


User provided reference genes

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