Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9183 Trifolium pratense HOM05D000644 ORTHO05D018524 4.6e-68 261.2 136 100.0
Medtr6g051840 Medicago truncatula HOM05D000644 ORTHO05D018524 1.4e-48 196.4 140 81.4
Glyma.09G129900 Glycine max HOM05D000644 ORTHO05D000504 1.3e-35 153.3 131 68.7
VMungo0464G0996 Vigna mungo HOM05D000644 ORTHO05D000504 1.3e-30 136.7 136 64.7
Lj2g0008327 Lotus japonicus HOM05D000644 ORTHO05D000504 3.8e-30 135.2 128 63.3
Phvul.004G106600 Phaseolus vulgaris HOM05D000644 ORTHO05D000504 4.9e-30 134.8 131 64.1
arahy.Tifrunner.gnm1.ann1.5TRY55 Arachis hypogaea HOM05D000644 ORTHO05D000504 4.1e-24 115.2 121 57.9
arahy.Tifrunner.gnm1.ann1.Q3MUFL Arachis hypogaea HOM05D000644 ORTHO05D000504 6.9e-24 114.4 121 57.9
Lj1g0001045 Lotus japonicus HOM05D000231 ORTHO05D018524 3.2e-21 105.5 111 56.8
Lj3g0014665 Lotus japonicus HOM05D000231 ORTHO05D000132 8.2e-17 90.9 95 56.8
Lalb_Chr19g0130581 Lupinus albus HOM05D000644 ORTHO05D000504 1.0e-14 84.0 118 44.9
Manes.14G021600 Manihot esculenta HOM05D000644 ORTHO05D000504 1.7e-14 83.2 111 43.2
Dinv35261 Davidia involucrata HOM05D000644 ORTHO05D000504 3.8e-14 82.0 129 41.9
arahy.Tifrunner.gnm1.ann1.V3SVTV Arachis hypogaea HOM05D000644 ORTHO05D000504 6.5e-14 81.3 118 44.9
arahy.Tifrunner.gnm1.ann1.34G0XH Arachis hypogaea HOM05D000644 ORTHO05D000504 8.5e-14 80.9 118 44.9
Haze_00054 Corylus avellana HOM05D000644 ORTHO05D000504 1.9e-13 79.7 125 41.6
Glyma.09G129700 Glycine max HOM05D000644 ORTHO05D000504 9.4e-13 77.4 101 45.5
GSVIVG01028842001 Vitis vinifera HOM05D000644 ORTHO05D000504 1.2e-12 77.0 106 44.3
Atru.chr1.343 Acer truncatum HOM05D000644 ORTHO05D000504 1.6e-12 76.6 71 56.3
Atru.ctg97_1.39 Acer truncatum HOM05D000644 ORTHO05D000504 1.6e-12 76.6 71 56.3
QL09p012548 Quercus lobata HOM05D000644 ORTHO05D000504 1.6e-12 76.6 123 40.7
FvH4_7g30340 Fragaria vesca HOM05D000644 ORTHO05D000504 2.1e-12 76.3 109 45.9
FAN06G0407 Fragaria x ananassa HOM05D000644 ORTHO05D000504 2.1e-12 76.3 109 45.9
FAN06G3760 Fragaria x ananassa HOM05D000644 ORTHO05D018524 2.1e-12 76.3 109 45.9
Lj2g0013838 Lotus japonicus HOM05D000644 ORTHO05D000504 2.7e-12 75.9 127 42.5
QL09p012570 Quercus lobata HOM05D000644 ORTHO05D000504 2.7e-12 75.9 125 43.2
FAN06G2329 Fragaria x ananassa HOM05D000644 ORTHO05D000504 3.6e-12 75.5 114 44.7
Glyma.16G177500 Glycine max HOM05D000644 ORTHO05D000504 3.6e-12 75.5 119 40.3
Atru.chr1.344 Acer truncatum HOM05D000644 ORTHO05D000504 4.7e-12 75.1 80 51.2
FvH4_7g30360 Fragaria vesca HOM05D000644 ORTHO05D000504 4.7e-12 75.1 114 44.7
FAN01G1321 Fragaria x ananassa HOM05D000644 ORTHO05D000504 4.7e-12 75.1 114 44.7
RcHm_v2.0_Chr1g0378481 Rosa chinensis HOM05D000644 ORTHO05D000504 6.1e-12 74.7 109 45.0
FAN10G3256 Fragaria x ananassa HOM05D000644 ORTHO05D000504 7.9e-12 74.3 109 45.0
Phvul.004G106300 Phaseolus vulgaris HOM05D000644 ORTHO05D000504 7.9e-12 74.3 114 41.2
FAN10G1875 Fragaria x ananassa HOM05D000644 ORTHO05D000504 2.3e-11 72.8 109 44.0
TAR629G1536 Trochodendron aralioides HOM05D000644 ORTHO05D000504 2.3e-11 72.8 94 47.9
FAN03G0294 Fragaria x ananassa HOM05D000644 ORTHO05D000504 6.7e-11 71.2 104 46.2
FAN03G3377 Fragaria x ananassa HOM05D010729 ORTHO05D011897 6.7e-11 71.2 104 46.2
QL09p012627 Quercus lobata HOM05D000644 ORTHO05D018524 6.7e-11 71.2 90 47.8
TPR.G9172 Trifolium pratense HOM05D000644 ORTHO05D018524 6.7e-11 71.2 115 40.0
vmacro09810 Vaccinium macrocarpon HOM05D000644 ORTHO05D000504 2.6e-10 69.3 90 47.8
Prupe.2G301800 Prunus persica HOM05D000644 ORTHO05D000504 4.4e-10 68.6 123 39.0
Oeu027868.1 Olea europaea HOM05D000644 ORTHO05D000504 7.4e-10 67.8 73 47.9
Gohir.A11G222500 Gossypium hirsutum HOM05D000644 ORTHO05D000504 9.7e-10 67.4 114 43.0
Actinidia31842 Actinidia chinensis HOM05D000268 ORTHO05D000261 1.7e-09 66.6 98 44.9
Gorai.003G069100 Gossypium raimondii HOM05D000644 ORTHO05D000504 1.7e-09 66.6 112 41.1
CDE02G1922 Ceratophyllum demersum HOM05D000644 ORTHO05D000504 2.2e-09 66.2 96 45.8
Gohir.D11G228100 Gossypium hirsutum HOM05D000644 ORTHO05D000504 2.8e-09 65.9 112 41.1
Ciclev10006976m.g Citrus clementina HOM05D000644 ORTHO05D000504 3.7e-09 65.5 123 34.1
Actinidia03139 Actinidia chinensis HOM05D000644 ORTHO05D000504 4.8e-09 65.1 113 39.8
Manes.06G153200 Manihot esculenta HOM05D000644 ORTHO05D000504 8.2e-09 64.3 105 40.0
FAN01G1896 Fragaria x ananassa HOM05D000644 ORTHO05D000504 1.1e-08 63.9 85 47.1
Sabra17G0123600 Salix brachista HOM05D000644 ORTHO05D000504 1.4e-08 63.5 110 34.5
COL.COLO4_30302 Corchorus olitorius HOM05D000644 ORTHO05D000504 2.4e-08 62.8 110 38.2
Rhsim09G0200900 Rhododendron simsii HOM05D000644 ORTHO05D000504 2.4e-08 62.8 108 40.7
CDE11G1128 Ceratophyllum demersum HOM05D000644 ORTHO05D000504 3.1e-08 62.4 96 42.7
SalBow4G2452 Salvia bowleyana HOM05D000644 ORTHO05D000504 3.1e-08 62.4 74 45.9
Eucgr.A02723 Eucalyptus grandis HOM05D000644 ORTHO05D000504 4.1e-08 62.0 89 44.9
Thecc.03G185400 Theobroma cacao HOM05D000644 ORTHO05D000504 5.3e-08 61.6 119 37.8
MBI16_g31222_MAGBIO Magnolia biondii HOM05D000644 ORTHO05D000504 9.1e-08 60.8 46 56.5
MD07G1279700 Malus domestica HOM05D000644 ORTHO05D000504 1.2e-07 60.5 104 39.4
Potri.017G147900 Populus trichocarpa HOM05D000644 ORTHO05D000504 1.2e-07 60.5 115 32.2
PSO675G7528 Papaver somniferum HOM05D000644 ORTHO05D000504 2.0e-07 59.7 91 39.6
Ciclev10000985m.g Citrus clementina HOM05D000644 ORTHO05D000504 2.6e-07 59.3 61 49.2
Ah.07g206500 Amaranthus hybridus HOM05D000644 ORTHO05D000504 3.4e-07 58.9 58 56.9
CARHR265720 Cardamine hirsuta HOM05D000644 ORTHO05D000504 3.4e-07 58.9 57 57.9
Migut.F00282 Erythranthe guttata HOM05D000644 ORTHO05D000504 3.4e-07 58.9 91 37.4
Os03g0125800 Oryza sativa ssp. japonica HOM05D000644 ORTHO05D000504 4.5e-07 58.5 64 51.6
ATR0733G154 Amborella trichopoda HOM05D000644 ORTHO05D000504 5.9e-07 58.2 42 61.9
arahy.Tifrunner.gnm1.ann1.6A93C1 Arachis hypogaea HOM05D000644 ORTHO05D000504 5.9e-07 58.2 124 33.9
Peaxi162Scf00417g01346 Petunia axillaris HOM05D000644 ORTHO05D000504 5.9e-07 58.2 43 58.1
Zm00001eb403660 Zea mays HOM05D000644 ORTHO05D000504 5.9e-07 58.2 54 59.3
arahy.Tifrunner.gnm1.ann1.RXPE7Q Arachis hypogaea HOM05D000644 ORTHO05D000504 7.7e-07 57.8 124 33.9
CSS0039719 Camellia sinensis var. sinensis HOM05D000644 ORTHO05D000504 7.7e-07 57.8 44 56.8
ClCG05G018980 Citrullus lanatus HOM05D000644 ORTHO05D000504 7.7e-07 57.8 42 61.9
CsaV3_3G045130 Cucumis sativus L. HOM05D000644 ORTHO05D000504 7.7e-07 57.8 42 61.9
Manes.05G159600 Manihot esculenta HOM05D000644 ORTHO05D000504 7.7e-07 57.8 53 54.7
Nn1g04990 Nelumbo nucifera HOM05D000644 ORTHO05D000504 7.7e-07 57.8 43 58.1
Pp3c24_10130 Physcomitrium patens HOM05D000644 ORTHO05D000504 7.7e-07 57.8 67 43.3
Thecc.08G026900 Theobroma cacao HOM05D000644 ORTHO05D000504 7.7e-07 57.8 51 52.9
AT1G47330 Arabidopsis thaliana HOM05D000644 ORTHO05D000504 1.0e-06 57.4 43 58.1
Cpa.g.sc36.78 Carica papaya HOM05D000644 ORTHO05D000504 1.0e-06 57.4 51 54.9
MELO3C003833.2 Cucumis melo HOM05D000644 ORTHO05D000504 1.0e-06 57.4 47 57.4
Duzib205G0580 Durio zibethinus HOM05D000644 ORTHO05D000504 1.0e-06 57.4 94 40.4
Pp3c23_13310 Physcomitrium patens HOM05D000644 ORTHO05D000504 1.0e-06 57.4 64 48.4
Sc15g0003410 Simmondsia chinensis HOM05D000644 ORTHO05D000504 1.0e-06 57.4 46 54.3
Atru.chr13.479 Acer truncatum HOM05D000644 ORTHO05D000504 1.3e-06 57.0 51 52.9
Aa31sc924G30 Aethionema arabicum HOM05D000644 ORTHO05D000504 1.3e-06 57.0 66 47.0
AL1G53530 Arabidopsis lyrata HOM05D000644 ORTHO05D000504 1.3e-06 57.0 46 54.3
arahy.Tifrunner.gnm1.ann1.H6523D Arachis hypogaea HOM05D000644 ORTHO05D000504 1.3e-06 57.0 124 33.9
BcaC05g27634 Brassica carinata HOM05D000644 ORTHO05D000504 1.3e-06 57.0 46 54.3
A05p21490 Brassica napus HOM05D000644 ORTHO05D000504 1.3e-06 57.0 46 54.3
C05p36220 Brassica napus HOM05D000644 ORTHO05D000504 1.3e-06 57.0 46 54.3
BolC5t32345H Brassica oleracea HOM05D000644 ORTHO05D000504 1.3e-06 57.0 46 54.3
BraA05t21068Z Brassica rapa HOM05D000644 ORTHO05D000504 1.3e-06 57.0 46 54.3
Thhalv10011494m.g Eutrema salsugineum HOM05D000644 ORTHO05D000504 1.3e-06 57.0 46 54.3
Sp1g34453 Schrenkiella parvula HOM05D000644 ORTHO05D000504 1.3e-06 57.0 46 54.3
Sed0009646 Sechium edule HOM05D000644 ORTHO05D000504 1.3e-06 57.0 50 54.0
Aqoxy6G01110 Aquilegia oxysepala HOM05D000644 ORTHO05D000504 1.7e-06 56.6 71 39.4
BcaB02g11478 Brassica carinata HOM05D000644 ORTHO05D000504 1.7e-06 56.6 45 55.6
Cfa018152 Carpinus fangiana HOM05D000644 ORTHO05D000504 1.7e-06 56.6 43 58.1
Duzib093G2148 Durio zibethinus HOM05D000644 ORTHO05D000504 1.7e-06 56.6 43 58.1
Eucgr.K00296 Eucalyptus grandis HOM05D000644 ORTHO05D000504 1.7e-06 56.6 99 41.4
Gohir.A05G193800 Gossypium hirsutum HOM05D000644 ORTHO05D000504 1.7e-06 56.6 43 58.1
MD08G1031700 Malus domestica HOM05D000644 ORTHO05D000504 1.7e-06 56.6 51 51.0
Potri.014G196900 Populus trichocarpa HOM05D000644 ORTHO05D000504 1.7e-06 56.6 54 51.9
Zm00001eb001900 Zea mays HOM05D000644 ORTHO05D000504 1.7e-06 56.6 46 63.0
Actinidia22544 Actinidia chinensis HOM05D000644 ORTHO05D000504 2.2e-06 56.2 58 44.8
arahy.Tifrunner.gnm1.ann1.AG8N2I Arachis hypogaea HOM05D000644 ORTHO05D000504 2.2e-06 56.2 121 33.9
arahy.Tifrunner.gnm1.ann1.T93CRE Arachis hypogaea HOM05D000644 ORTHO05D000504 2.2e-06 56.2 121 33.9
CiPaw.15G078200 Carya illinoinensis HOM05D000644 ORTHO05D000504 2.2e-06 56.2 86 36.0
COL.COLO4_26314 Corchorus olitorius HOM05D000644 ORTHO05D000504 2.2e-06 56.2 46 54.3
Gohir.D05G197000 Gossypium hirsutum HOM05D000644 ORTHO05D000504 2.2e-06 56.2 49 53.1
Gorai.009G201900 Gossypium raimondii HOM05D000644 ORTHO05D000504 2.2e-06 56.2 49 53.1
QL02p008612 Quercus lobata HOM05D000644 ORTHO05D000504 2.2e-06 56.2 101 36.6
Carub.0008s1295 Capsella rubella HOM05D000644 ORTHO05D000504 2.9e-06 55.8 45 62.2
Cpa.g.sc107.120 Carica papaya HOM05D000644 ORTHO05D000504 2.9e-06 55.8 78 39.7
Gohir.A06G010200 Gossypium hirsutum HOM05D000644 ORTHO05D000504 2.9e-06 55.8 48 52.1
Gorai.010G010300 Gossypium raimondii HOM05D000644 ORTHO05D000504 2.9e-06 55.8 48 52.1
Mapoly0045s0045 Marchantia polymorpha HOM05D000644 ORTHO05D000504 2.9e-06 55.8 39 64.1
Medtr6g052300 Medicago truncatula HOM05D000644 ORTHO05D000504 2.9e-06 55.8 122 32.8
unitig_37.g12995 Utricularia gibba HOM05D000644 ORTHO05D000504 2.9e-06 55.8 43 58.1
Dinv36083 Davidia involucrata HOM05D000644 ORTHO05D000504 3.8e-06 55.5 53 50.9
Duzib116G0387 Durio zibethinus HOM05D000644 ORTHO05D000504 3.8e-06 55.5 45 55.6
Nitab4.5_0006280g0050 Nicotiana tabacum HOM05D000644 ORTHO05D000504 3.8e-06 55.5 41 58.5
Pp3c1_32750 Physcomitrium patens HOM05D000644 ORTHO05D000504 3.8e-06 55.5 51 51.0
Prupe.1G379300 Prunus persica HOM05D000644 ORTHO05D000504 3.8e-06 55.5 49 53.1
Carub.0001s3613 Capsella rubella HOM05D000644 ORTHO05D000504 5.0e-06 55.1 58 48.3
CARHR036920 Cardamine hirsuta HOM05D000644 ORTHO05D000504 5.0e-06 55.1 58 48.3
AUR62031430 Chenopodium quinoa HOM05D000644 ORTHO05D000504 5.0e-06 55.1 53 56.6
Peaxi162Scf00444g00245 Petunia axillaris HOM05D000644 ORTHO05D000504 5.0e-06 55.1 42 64.3
Pp3c5_12990 Physcomitrium patens HOM05D000644 ORTHO05D000504 5.0e-06 55.1 77 44.2
PGR031G1910 Punica granatum HOM05D000644 ORTHO05D000504 5.0e-06 55.1 49 53.1
THA.LOC104808671 Tarenaya hassleriana HOM05D000644 ORTHO05D000504 5.0e-06 55.1 122 35.2
TAR625G0154 Trochodendron aralioides HOM05D000644 ORTHO05D000504 5.0e-06 55.1 49 51.0
AUR62021111 Chenopodium quinoa HOM05D000644 ORTHO05D000504 6.5e-06 54.7 53 56.6
MBI17_g12007_MAGBIO Magnolia biondii HOM05D000644 ORTHO05D000504 6.5e-06 54.7 47 55.3
Nitab4.5_0002637g0090 Nicotiana tabacum HOM05D000644 ORTHO05D000504 6.5e-06 54.7 42 64.3
Nitab4.5_0010510g0020 Nicotiana tabacum HOM05D000644 ORTHO05D000504 6.5e-06 54.7 43 55.8
Solyc03g007570.2 Solanum lycopersicum HOM05D000644 ORTHO05D000504 6.5e-06 54.7 61 47.5
Sopen03g003530 Solanum pennellii HOM05D000644 ORTHO05D000504 6.5e-06 54.7 61 47.5
PGSC0003DMG400009496 Solanum tuberosum HOM05D000644 ORTHO05D000504 6.5e-06 54.7 61 47.5
TPR.G12343 Trifolium pratense HOM05D000644 ORTHO05D000504 6.5e-06 54.7 43 53.5
TAR381G1683 Trochodendron aralioides HOM05D000644 ORTHO05D000504 6.5e-06 54.7 42 57.1
GSVIVG01009710001 Vitis vinifera HOM05D000644 ORTHO05D000504 6.5e-06 54.7 51 49.0
Ah.05g167450 Amaranthus hybridus HOM05D000644 ORTHO05D000504 8.5e-06 54.3 40 57.5
MSTRG.25173 Avicennia marina HOM05D000644 ORTHO05D000504 8.5e-06 54.3 48 54.2
AUR62043261 Chenopodium quinoa HOM05D000644 ORTHO05D000504 8.5e-06 54.3 41 56.1
Oeu029854.1 Olea europaea HOM05D000644 ORTHO05D000504 8.5e-06 54.3 55 49.1
Pp3c16_11920 Physcomitrium patens HOM05D000644 ORTHO05D000504 8.5e-06 54.3 47 57.4
Sp6g14940 Schrenkiella parvula HOM05D000644 ORTHO05D000504 8.5e-06 54.3 49 55.1
THA.LOC104822824 Tarenaya hassleriana HOM05D000644 ORTHO05D000504 8.5e-06 54.3 109 33.0
TWI36G1293 Tripterygium wilfordii HOM05D000644 ORTHO05D000504 8.5e-06 54.3 50 50.0
HPP92_014499 Vanilla planifolia HOM05D000644 ORTHO05D000504 8.5e-06 54.3 81 43.2


User provided reference genes

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