Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9178 Trifolium pratense HOM05D008979 ORTHO05D011829 9.3e-183 643.7 384 100.0
TPR.G3043 Trifolium pratense HOM05D000159 ORTHO05D002729 8.2e-22 109.0 52 94.2
Psat6g160520 Pisum sativum HOM05D000159 ORTHO05D002729 3.6e-17 93.6 52 76.9
Medtr1g086250 Medicago truncatula HOM05D000159 ORTHO05D002729 4.7e-17 93.2 52 76.9
Ca_10248_v3 Cicer arietinum L. HOM05D000159 ORTHO05D002729 2.6e-15 87.4 50 74.0
Lalb_Chr21g0309801 Lupinus albus HOM05D000159 ORTHO05D002729 4.4e-15 86.7 54 66.7
Glyma.02G008600 Glycine max HOM05D000159 ORTHO05D002729 1.7e-14 84.7 51 68.6
VMungo0720G0292 Vigna mungo HOM05D000159 ORTHO05D002729 1.7e-14 84.7 51 68.6
Lj5g0024810 Lotus japonicus HOM05D000159 ORTHO05D002729 4.8e-14 83.2 54 61.1
Phvul.007G210600 Phaseolus vulgaris HOM05D000159 ORTHO05D002729 2.4e-13 80.9 51 64.7
Glyma.10G009200 Glycine max HOM05D000159 ORTHO05D002729 2.0e-12 77.8 45 71.1
Lalb_Chr02g0147041 Lupinus albus HOM05D000159 ORTHO05D002729 1.3e-11 75.1 52 61.5
Lalb_Chr06g0167101 Lupinus albus HOM05D000159 ORTHO05D002729 5.0e-11 73.2 55 54.5
Duzib211G0455 Durio zibethinus HOM05D000159 ORTHO05D002729 3.2e-10 70.5 51 56.9
Psat5g282200 Pisum sativum HOM05D008979 ORTHO05D011829 3.2e-10 70.5 81 44.4
Gohir.D11G108100 Gossypium hirsutum HOM05D000159 ORTHO05D002729 4.2e-10 70.1 51 56.9
Gorai.007G116100 Gossypium raimondii HOM05D000159 ORTHO05D002729 4.2e-10 70.1 51 56.9
Psat6g153760 Pisum sativum HOM05D008979 ORTHO05D011829 4.2e-10 70.1 65 52.3
GSVIVG01028208001 Vitis vinifera HOM05D000159 ORTHO05D002729 4.2e-10 70.1 46 60.9
Gohir.A11G103700 Gossypium hirsutum HOM05D000159 ORTHO05D002729 5.5e-10 69.7 51 56.9
Duzib133G0518 Durio zibethinus HOM05D000159 ORTHO05D002729 1.2e-09 68.6 51 54.9
COL.COLO4_23150 Corchorus olitorius HOM05D000159 ORTHO05D002729 1.6e-09 68.2 52 57.7
Thhalv10001295m.g Eutrema salsugineum HOM05D000159 ORTHO05D002729 1.6e-09 68.2 50 58.0
Sp4g29060 Schrenkiella parvula HOM05D000159 ORTHO05D002729 1.6e-09 68.2 50 58.0
Sabra14G0084400 Salix brachista HOM05D000159 ORTHO05D002729 2.1e-09 67.8 54 50.0
Ciclev10018697m.g Citrus clementina HOM05D000159 ORTHO05D002729 2.7e-09 67.4 50 54.0
Thecc.01G323200 Theobroma cacao HOM05D000159 ORTHO05D002729 2.7e-09 67.4 49 55.1
Gohir.A12G120900 Gossypium hirsutum HOM05D000159 ORTHO05D002729 3.6e-09 67.0 52 53.8
Gohir.D12G124700 Gossypium hirsutum HOM05D000159 ORTHO05D002729 3.6e-09 67.0 52 53.8
Gorai.008G135700 Gossypium raimondii HOM05D000159 ORTHO05D002729 3.6e-09 67.0 52 53.8
Potri.014G114300 Populus trichocarpa HOM05D000159 ORTHO05D002729 3.6e-09 67.0 64 43.8
Duzib138G1731 Durio zibethinus HOM05D000159 ORTHO05D002729 4.7e-09 66.6 49 55.1
THA.LOC104827654 Tarenaya hassleriana HOM05D000159 ORTHO05D002729 4.7e-09 66.6 50 56.0
THA.LOC104827691 Tarenaya hassleriana HOM05D000159 ORTHO05D002729 4.7e-09 66.6 50 56.0
AL4G46570 Arabidopsis lyrata HOM05D000159 ORTHO05D002729 6.1e-09 66.2 51 56.9
CANSAT25G1789 Cannabis sativa HOM05D000159 ORTHO05D002729 6.1e-09 66.2 52 57.7
Cpa.g.sc181.10 Carica papaya HOM05D000159 ORTHO05D002729 6.1e-09 66.2 55 47.3
CiPaw.07G123900 Carya illinoinensis HOM05D000159 ORTHO05D002729 6.1e-09 66.2 45 57.8
C04p00890 Brassica napus HOM05D000159 ORTHO05D002729 8.0e-09 65.9 50 56.0
BolC4t21727H Brassica oleracea HOM05D000159 ORTHO05D002729 8.0e-09 65.9 50 56.0
Potri.002G188700 Populus trichocarpa HOM05D000159 ORTHO05D002729 8.0e-09 65.9 45 57.8
Actinidia21351 Actinidia chinensis HOM05D000159 ORTHO05D002729 1.0e-08 65.5 46 65.2
Manes.05G010400 Manihot esculenta HOM05D000159 ORTHO05D002729 1.0e-08 65.5 55 54.5
Sabra02G0166600 Salix brachista HOM05D000159 ORTHO05D002729 1.4e-08 65.1 45 60.0
Carub.0004s2981 Capsella rubella HOM05D000159 ORTHO05D002729 1.8e-08 64.7 48 56.2
CARHR142430 Cardamine hirsuta HOM05D000159 ORTHO05D002729 2.3e-08 64.3 49 55.1
Gohir.D08G047700 Gossypium hirsutum HOM05D000159 ORTHO05D002729 2.3e-08 64.3 50 56.0
Gorai.004G047200 Gossypium raimondii HOM05D000159 ORTHO05D002729 2.3e-08 64.3 50 56.0
Psat0s4420g0040 Pisum sativum HOM05D008979 ORTHO05D011829 2.3e-08 64.3 62 48.4
QL12p034448 Quercus lobata HOM05D000159 ORTHO05D002729 3.0e-08 63.9 54 46.3
BcaC02g09025 Brassica carinata HOM05D000159 ORTHO05D002729 4.0e-08 63.5 45 60.0
A05p00730 Brassica napus HOM05D000159 ORTHO05D002729 4.0e-08 63.5 50 56.0
BraA05t19077Z Brassica rapa HOM05D000159 ORTHO05D002729 4.0e-08 63.5 50 56.0
Hma1.2p1_0484F.1_g162900 Hydrangea macrophylla HOM05D000159 ORTHO05D002729 4.0e-08 63.5 45 57.8
arahy.Tifrunner.gnm1.ann1.5CG51V Arachis hypogaea HOM05D000159 ORTHO05D002729 5.2e-08 63.2 46 60.9
Gohir.A08G037400 Gossypium hirsutum HOM05D000159 ORTHO05D002729 8.8e-08 62.4 50 56.0
THA.LOC104827653 Tarenaya hassleriana HOM05D000159 ORTHO05D002729 8.8e-08 62.4 50 50.0
Dinv12094 Davidia involucrata HOM05D000159 ORTHO05D002729 1.5e-07 61.6 44 59.1
PGR042G3374 Punica granatum HOM05D000159 ORTHO05D002729 1.5e-07 61.6 43 58.1
CSS0037275 Camellia sinensis var. sinensis HOM05D000159 ORTHO05D002729 2.0e-07 61.2 45 60.0
Nn3g21895 Nelumbo nucifera HOM05D000159 ORTHO05D002729 2.0e-07 61.2 51 51.0
unitig_8.g3102 Utricularia gibba HOM05D000159 ORTHO05D002729 2.0e-07 61.2 45 55.6
Cc03_g00210 Coffea canephora HOM05D000159 ORTHO05D002729 2.6e-07 60.8 45 55.6
Dinv29517 Davidia involucrata HOM05D000159 ORTHO05D002729 2.6e-07 60.8 44 59.1
Potri.008G098600 Populus trichocarpa HOM05D000159 ORTHO05D002729 2.6e-07 60.8 50 54.0
Manes.01G233400 Manihot esculenta HOM05D000159 ORTHO05D002729 3.3e-07 60.5 53 50.9
Sed0026865 Sechium edule HOM05D000159 ORTHO05D002729 3.3e-07 60.5 54 44.4
TWI59G0684 Tripterygium wilfordii HOM05D000159 ORTHO05D002729 3.3e-07 60.5 54 46.3
HPP92_002653 Vanilla planifolia HOM05D000159 ORTHO05D000148 4.4e-07 60.1 50 52.0
Rhsim13G0000500 Rhododendron simsii HOM05D000159 ORTHO05D002729 7.5e-07 59.3 45 60.0
ClCG10G011820 Citrullus lanatus HOM05D000159 ORTHO05D002729 9.7e-07 58.9 54 42.6
Dinv33162 Davidia involucrata HOM05D000159 ORTHO05D002729 9.7e-07 58.9 45 55.6
TAR362G1270 Trochodendron aralioides HOM05D000159 ORTHO05D002729 9.7e-07 58.9 44 54.5
SalBow8G0617 Salvia bowleyana HOM05D000159 ORTHO05D002729 1.3e-06 58.5 49 49.0
vmacro02366 Vaccinium macrocarpon HOM05D000159 ORTHO05D002729 1.3e-06 58.5 50 50.0
Lj3A839T54 Lonicera japonica HOM05D000159 ORTHO05D002729 1.7e-06 58.2 48 52.1
Sed0010875 Sechium edule HOM05D000159 ORTHO05D002729 1.7e-06 58.2 54 42.6
Ah.07g203730 Amaranthus hybridus HOM05D000159 ORTHO05D002729 2.2e-06 57.8 36 58.3
MSTRG.18064 Avicennia marina HOM05D000159 ORTHO05D002729 2.2e-06 57.8 49 53.1
Cfa004887 Carpinus fangiana HOM05D000159 ORTHO05D002729 2.2e-06 57.8 53 39.6
MELO3C012909.2 Cucumis melo HOM05D000159 ORTHO05D002729 2.2e-06 57.8 44 52.3
CsaV3_3G031570 Cucumis sativus L. HOM05D000159 ORTHO05D002729 2.2e-06 57.8 44 52.3
CiPaw.08G084300 Carya illinoinensis HOM05D000159 ORTHO05D002729 2.8e-06 57.4 44 54.5
MD16G1137700 Malus domestica HOM05D000159 ORTHO05D002729 2.8e-06 57.4 54 48.1
Sabra08G0074600 Salix brachista HOM05D000159 ORTHO05D002729 2.8e-06 57.4 50 50.0
Hund12248 Selenicereus undatus HOM05D000159 ORTHO05D002729 2.8e-06 57.4 32 65.6
Cpa.g.sc146.32 Carica papaya HOM05D000159 ORTHO05D002729 3.7e-06 57.0 45 55.6
Lsat_1_v5_gn_6_117840 Lactuca sativa HOM05D000159 ORTHO05D002729 3.7e-06 57.0 44 56.8
CSS0037326 Camellia sinensis var. sinensis HOM05D000159 ORTHO05D002729 4.8e-06 56.6 44 54.5
Haze_05125 Corylus avellana HOM05D000159 ORTHO05D002729 4.8e-06 56.6 53 37.7
Gorai.005G071400 Gossypium raimondii HOM05D000159 ORTHO05D002729 4.8e-06 56.6 45 55.6
Sabra10G0118600 Salix brachista HOM05D000159 ORTHO05D002729 4.8e-06 56.6 45 53.3
SGA_v2.0_scaffold157G37380 Striga asiatica HOM05D000159 ORTHO05D002729 4.8e-06 56.6 45 53.3
AT2G47070 Arabidopsis thaliana HOM05D000159 ORTHO05D002729 6.3e-06 56.2 46 56.5
ECA246G0490 Erigeron canadensis HOM05D000159 ORTHO05D002729 6.3e-06 56.2 44 54.5
Migut.D00024 Erythranthe guttata HOM05D000159 ORTHO05D002729 6.3e-06 56.2 49 49.0
Eucgr.A01019 Eucalyptus grandis HOM05D000159 ORTHO05D002729 6.3e-06 56.2 40 57.5
FAN17G2719 Fragaria x ananassa HOM05D000159 ORTHO05D002729 6.3e-06 56.2 44 56.8
Potri.010G154000 Populus trichocarpa HOM05D000159 ORTHO05D002729 6.3e-06 56.2 45 53.3
FAN12G2890 Fragaria x ananassa HOM05D000159 ORTHO05D002729 8.2e-06 55.8 44 56.8


User provided reference genes

Program Settings