Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 2.7e-39 164.9 82 100.0
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 1.5e-29 132.5 80 77.5
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 1.5e-29 132.5 80 82.5
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 4.3e-29 131.0 80 76.2
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 5.6e-29 130.6 80 75.0
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 9.6e-29 129.8 80 75.0
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 1.6e-28 129.0 80 80.0
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 1.6e-28 129.0 80 81.2
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 1.6e-28 129.0 80 80.0
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 1.6e-28 129.0 80 76.2
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.6e-28 127.9 80 75.0
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 6.2e-28 127.1 80 75.0
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 1.1e-27 126.3 80 73.8
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 1.1e-27 126.3 80 77.5
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 1.1e-27 126.3 80 73.8
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 1.8e-27 125.6 80 72.5
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 2.4e-27 125.2 80 76.2
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 2.4e-27 125.2 80 76.2
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 3.1e-27 124.8 80 72.5
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 3.1e-27 124.8 80 72.5
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 3.1e-27 124.8 80 72.5
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 3.1e-27 124.8 80 75.0
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 4.0e-27 124.4 80 72.5
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 4.0e-27 124.4 80 75.0
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 5.3e-27 124.0 80 72.5
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 6.9e-27 123.6 80 71.2
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 9.0e-27 123.2 80 72.5
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 9.0e-27 123.2 80 71.2
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 9.0e-27 123.2 80 71.2
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 9.0e-27 123.2 80 71.2
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 68.8
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 71.2
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 71.2
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 71.2
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 71.2
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 71.2
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 71.2
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 71.2
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 71.2
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 71.2
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 71.2
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 1.5e-26 122.5 80 73.8
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 2.0e-26 122.1 80 72.5
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 2.6e-26 121.7 80 72.5
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 3.4e-26 121.3 80 70.0
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 3.4e-26 121.3 80 72.5
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 5.8e-26 120.6 80 70.0
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 5.8e-26 120.6 80 70.0
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 5.8e-26 120.6 80 71.2
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 5.8e-26 120.6 80 68.8
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 1.3e-25 119.4 80 71.2
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 1.3e-25 119.4 80 71.2
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 1.7e-25 119.0 80 67.5
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 1.7e-25 119.0 80 68.8
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 2.2e-25 118.6 89 65.2
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 2.9e-25 118.2 80 66.2
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 2.9e-25 118.2 80 68.8
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 3.8e-25 117.9 80 72.5
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 3.8e-25 117.9 80 70.0
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.9e-25 117.5 80 68.8
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 4.9e-25 117.5 80 68.8
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 6.4e-25 117.1 80 68.8
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 6.4e-25 117.1 80 68.8
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 8.4e-25 116.7 80 67.5
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 1.4e-24 115.9 80 67.5
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 1.4e-24 115.9 80 68.8
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 1.9e-24 115.5 80 66.2
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 1.9e-24 115.5 80 66.2
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.9e-24 115.5 80 66.2
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.9e-24 115.5 80 66.2
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 1.9e-24 115.5 80 67.5
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 2.4e-24 115.2 80 67.5
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 2.4e-24 115.2 80 68.8
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 2.4e-24 115.2 80 66.2
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 3.2e-24 114.8 83 66.3
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 3.2e-24 114.8 80 66.2
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 3.2e-24 114.8 80 66.2
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 4.2e-24 114.4 80 65.0
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 4.2e-24 114.4 80 66.2
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 4.2e-24 114.4 80 66.2
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 5.4e-24 114.0 80 66.2
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 7.1e-24 113.6 80 68.8
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 9.3e-24 113.2 80 65.0
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 9.3e-24 113.2 80 65.0
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 9.3e-24 113.2 80 65.0
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 1.2e-23 112.8 81 66.7
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 2.1e-23 112.1 80 66.2
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.7e-23 111.7 80 63.8
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 6.0e-23 110.5 80 62.5
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 1.0e-22 109.8 80 66.2
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 1.3e-22 109.4 80 62.5
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.8e-22 109.0 97 59.8
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 1.8e-22 109.0 80 61.2
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 3.0e-22 108.2 80 62.5
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 1.5e-21 105.9 104 55.8
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.5e-21 105.9 80 61.2
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 1.5e-21 105.9 80 56.2
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 1.5e-21 105.9 80 56.2
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 2.5e-21 105.1 80 60.0
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 4.3e-21 104.4 80 62.5
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 4.3e-21 104.4 80 57.5
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 5.6e-21 104.0 77 64.9
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.3e-20 102.8 80 60.0
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 1.3e-20 102.8 80 53.8
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.6e-20 102.4 80 57.5
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 6.2e-20 100.5 61 78.7
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 4.0e-19 97.8 81 54.3
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 2.2e-17 92.0 80 58.8
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 2.9e-17 91.7 81 58.0
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 8.4e-17 90.1 62 64.5
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 1.1e-16 89.7 80 57.5
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 2.5e-16 88.6 80 53.8
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 6.0e-15 84.0 53 73.6
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 1.0e-14 83.2 67 56.7
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 1.0e-14 83.2 67 56.7
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 1.7e-09 65.9 80 37.5
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 8.4e-09 63.5 62 48.4
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 1.4e-08 62.8 80 40.0
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 3.0e-06 55.1 84 31.0
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 6.7e-06 53.9 80 40.0


User provided reference genes

Program Settings