Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9158 Trifolium pratense HOM05D000425 ORTHO05D000373 1.3e-39 166.0 89 100.0
Medtr1g050328 Medicago truncatula HOM05D000425 ORTHO05D000373 1.5e-27 125.9 80 76.2
Ca_24104_v3 Cicer arietinum L. HOM05D000425 ORTHO05D000373 2.2e-26 122.1 78 78.2
Psat6g093880 Pisum sativum HOM05D000425 ORTHO05D000373 2.2e-26 122.1 81 75.3
Lj6g0013335 Lotus japonicus HOM05D000425 ORTHO05D000373 4.8e-26 120.9 79 74.7
Glyma.02G160900 Glycine max HOM05D000425 ORTHO05D000373 3.5e-24 114.8 81 69.1
Glyma.10G109500 Glycine max HOM05D000425 ORTHO05D000373 3.5e-24 114.8 81 69.1
VMungo0720G0628 Vigna mungo HOM05D000425 ORTHO05D000373 7.2e-22 107.1 80 66.2
arahy.Tifrunner.gnm1.ann1.3H39ZY Arachis hypogaea HOM05D000425 ORTHO05D000373 8.0e-21 103.6 80 65.0
arahy.Tifrunner.gnm1.ann1.K7T5R5 Arachis hypogaea HOM05D000425 ORTHO05D000373 8.0e-21 103.6 80 65.0
Glyma.20G181900 Glycine max HOM05D000425 ORTHO05D000373 2.0e-19 99.0 79 64.6
Haze_16848 Corylus avellana HOM05D000425 ORTHO05D000373 2.6e-19 98.6 83 61.4
Phvul.007G242400 Phaseolus vulgaris HOM05D000425 ORTHO05D000373 2.6e-19 98.6 80 62.5
Lalb_Chr03g0036431 Lupinus albus HOM05D000425 ORTHO05D000373 3.4e-19 98.2 79 65.8
Lalb_Chr19g0129131 Lupinus albus HOM05D000425 ORTHO05D000373 4.4e-19 97.8 78 67.9
HanXRQChr14g0456651 Helianthus annuus HOM05D000425 ORTHO05D000373 9.8e-19 96.7 79 62.0
Lalb_Chr21g0313741 Lupinus albus HOM05D000425 ORTHO05D000373 9.8e-19 96.7 79 63.3
Ca_20268_v3 Cicer arietinum L. HOM05D000425 ORTHO05D000373 1.3e-18 96.3 81 64.2
Phvul.007G097200 Phaseolus vulgaris HOM05D000425 ORTHO05D000373 1.7e-18 95.9 79 60.8
Psat6g181960 Pisum sativum HOM05D000425 ORTHO05D000373 1.7e-18 95.9 81 61.7
Sc23g0004910 Simmondsia chinensis HOM05D000425 ORTHO05D000373 3.7e-18 94.7 80 61.2
Thecc.10G080300 Theobroma cacao HOM05D000425 ORTHO05D000373 4.8e-18 94.4 82 61.0
VMungo0720G3028 Vigna mungo HOM05D000425 ORTHO05D000373 4.8e-18 94.4 79 62.0
Lsat_1_v5_gn_2_112901 Lactuca sativa HOM05D000425 ORTHO05D000373 8.3e-18 93.6 80 62.5
Gohir.A05G294300 Gossypium hirsutum HOM05D000425 ORTHO05D000373 1.4e-17 92.8 84 59.5
Gohir.D05G294800 Gossypium hirsutum HOM05D000425 ORTHO05D000373 1.4e-17 92.8 84 59.5
Gorai.009G311500 Gossypium raimondii HOM05D000425 ORTHO05D000373 1.4e-17 92.8 84 59.5
Lalb_Chr02g0152151 Lupinus albus HOM05D000425 ORTHO05D000373 3.1e-17 91.7 79 60.8
TWI38G1268 Tripterygium wilfordii HOM05D000425 ORTHO05D000373 4.1e-17 91.3 80 61.2
FAN01G1533 Fragaria x ananassa HOM05D000425 ORTHO05D000373 7.0e-17 90.5 82 59.8
A09p47760 Brassica napus HOM05D000425 ORTHO05D000373 1.2e-16 89.7 81 53.1
BraA09t40234Z Brassica rapa HOM05D000425 ORTHO05D000373 1.2e-16 89.7 81 53.1
Oeu015082.1 Olea europaea HOM05D000425 ORTHO05D000373 1.2e-16 89.7 84 56.0
FAN10G2300 Fragaria x ananassa HOM05D000425 ORTHO05D000373 1.6e-16 89.4 82 58.5
FAN10G2737 Fragaria x ananassa HOM05D000425 ORTHO05D000373 1.6e-16 89.4 84 59.5
ECA238G4802 Erigeron canadensis HOM05D000425 ORTHO05D000373 2.0e-16 89.0 82 58.5
FAN03G1171 Fragaria x ananassa HOM05D000425 ORTHO05D000373 2.0e-16 89.0 81 58.0
BcaB01g00156 Brassica carinata HOM05D000425 ORTHO05D000373 4.5e-16 87.8 81 51.9
BcaC07g39779 Brassica carinata HOM05D000425 ORTHO05D000373 4.5e-16 87.8 81 53.1
C08p29990 Brassica napus HOM05D000425 ORTHO05D000373 4.5e-16 87.8 81 53.1
BolC8t50608H Brassica oleracea HOM05D000425 ORTHO05D000373 4.5e-16 87.8 81 53.1
Prupe.2G209900 Prunus persica HOM05D000425 ORTHO05D000373 4.5e-16 87.8 81 56.8
FvH4_7g18870 Fragaria vesca HOM05D000425 ORTHO05D000373 5.9e-16 87.4 82 58.5
FAN06G2715 Fragaria x ananassa HOM05D000425 ORTHO05D000373 5.9e-16 87.4 82 58.5
FAN06G3886 Fragaria x ananassa HOM05D000425 ORTHO05D000373 5.9e-16 87.4 82 58.5
MD07G1171200 Malus domestica HOM05D000425 ORTHO05D000373 7.7e-16 87.0 81 55.6
Rhsim09G0149600 Rhododendron simsii HOM05D000425 ORTHO05D000373 7.7e-16 87.0 81 55.6
RhsimUnG0187000 Rhododendron simsii HOM05D000425 ORTHO05D000373 7.7e-16 87.0 81 55.6
Duzib106G1167 Durio zibethinus HOM05D000425 ORTHO05D000373 1.0e-15 86.7 81 54.3
Duzib128G1117 Durio zibethinus HOM05D000425 ORTHO05D000373 2.9e-15 85.1 82 56.1
Aa31LG5G20470 Aethionema arabicum HOM05D000425 ORTHO05D000373 3.8e-15 84.7 80 53.8
MELO3C019816.2 Cucumis melo HOM05D000425 ORTHO05D000373 3.8e-15 84.7 81 55.6
THA.LOC104825222 Tarenaya hassleriana HOM05D000425 ORTHO05D000373 6.6e-15 84.0 80 55.0
Lsat_1_v5_gn_4_127280 Lactuca sativa HOM05D000425 ORTHO05D000373 1.1e-14 83.2 80 56.2
MD01G1104600 Malus domestica HOM05D000425 ORTHO05D000373 1.1e-14 83.2 81 53.1
BcaC02g12912 Brassica carinata HOM05D000425 ORTHO05D000373 1.5e-14 82.8 81 51.9
Sp4g21480 Schrenkiella parvula HOM05D000425 ORTHO05D000373 1.9e-14 82.4 80 51.2
CSS0002138 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 2.5e-14 82.0 82 56.1
CsaV3_6G036610 Cucumis sativus L. HOM05D000425 ORTHO05D000373 2.5e-14 82.0 79 57.0
AL4G36430 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 3.3e-14 81.6 80 51.2
Oeu046635.3 Olea europaea HOM05D000425 ORTHO05D000373 3.3e-14 81.6 83 53.0
AUR62014264 Chenopodium quinoa HOM05D000425 ORTHO05D000373 4.2e-14 81.3 82 53.7
Gohir.A10G204200 Gossypium hirsutum HOM05D000425 ORTHO05D000373 4.2e-14 81.3 82 56.1
Gorai.011G238000 Gossypium raimondii HOM05D000425 ORTHO05D000373 4.2e-14 81.3 82 56.1
PGR044G0567 Punica granatum HOM05D000425 ORTHO05D000373 4.2e-14 81.3 81 55.6
unitig_26.g9458 Utricularia gibba HOM05D000425 ORTHO05D000373 4.2e-14 81.3 84 51.2
BcaC02g12041 Brassica carinata HOM05D000425 ORTHO05D000373 5.5e-14 80.9 82 52.4
C04p08580 Brassica napus HOM05D000425 ORTHO05D000373 5.5e-14 80.9 82 52.4
BolC4t22453H Brassica oleracea HOM05D000425 ORTHO05D000373 5.5e-14 80.9 82 52.4
Nn2g11557 Nelumbo nucifera HOM05D000425 ORTHO05D000373 5.5e-14 80.9 79 50.6
Actinidia06740 Actinidia chinensis HOM05D000425 ORTHO05D000373 7.2e-14 80.5 78 56.4
BraA05t19682Z Brassica rapa HOM05D000425 ORTHO05D000373 7.2e-14 80.5 82 51.2
Carub.0004s2118 Capsella rubella HOM05D000425 ORTHO05D000373 7.2e-14 80.5 82 53.7
Aqoxy2G01796 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 9.5e-14 80.1 83 53.0
BcaC02g12909 Brassica carinata HOM05D000425 ORTHO05D000373 9.5e-14 80.1 80 50.0
BcaC02g12911 Brassica carinata HOM05D000425 ORTHO05D000373 9.5e-14 80.1 80 50.0
Migut.F01722 Erythranthe guttata HOM05D000425 ORTHO05D000373 9.5e-14 80.1 87 55.2
Glyma.10G208800 Glycine max HOM05D000425 ORTHO05D000373 9.5e-14 80.1 79 55.7
TAR633G2021 Trochodendron aralioides HOM05D000425 ORTHO05D000373 9.5e-14 80.1 80 53.8
Aqoxy1G01173_Aqoxy1G01174 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 1.2e-13 79.7 87 52.9
AT2G39130 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 1.2e-13 79.7 81 53.1
PGSC0003DMG400007424 Solanum tuberosum HOM05D000425 ORTHO05D000373 1.2e-13 79.7 89 48.3
Lalb_Chr01g0010441 Lupinus albus HOM05D000425 ORTHO05D000373 1.6e-13 79.3 80 53.8
RcHm_v2.0_Chr1g0362811 Rosa chinensis HOM05D000425 ORTHO05D000373 1.6e-13 79.3 81 53.1
Sp5g07590 Schrenkiella parvula HOM05D000425 ORTHO05D000373 1.6e-13 79.3 82 50.0
HanXRQChr07g0195041 Helianthus annuus HOM05D000425 ORTHO05D000373 2.8e-13 78.6 79 53.2
MSTRG.384 Avicennia marina HOM05D000425 ORTHO05D000373 4.7e-13 77.8 86 51.2
Gohir.D10G212100 Gossypium hirsutum HOM05D000425 ORTHO05D000373 8.0e-13 77.0 82 54.9
Sed0022938 Sechium edule HOM05D000425 ORTHO05D000373 1.0e-12 76.6 79 53.2
TAR623G0773 Trochodendron aralioides HOM05D000425 ORTHO05D000373 1.0e-12 76.6 79 53.2
Cc02_g11030 Coffea canephora HOM05D000425 ORTHO05D000373 1.4e-12 76.3 82 56.1
Thhalv10010278m.g Eutrema salsugineum HOM05D000425 ORTHO05D000373 1.4e-12 76.3 82 50.0
Potri.008G036300 Populus trichocarpa HOM05D000425 ORTHO05D000373 1.4e-12 76.3 83 51.8
Lj5g0024381 Lotus japonicus HOM05D000425 ORTHO05D000373 1.8e-12 75.9 44 79.5
Lj3A881T67 Lonicera japonica HOM05D000425 ORTHO05D000373 2.3e-12 75.5 83 53.0
Sc09g0006100 Simmondsia chinensis HOM05D000425 ORTHO05D000373 2.3e-12 75.5 79 45.6
PSO339G4452 Papaver somniferum HOM05D000425 ORTHO05D000373 3.0e-12 75.1 80 48.8
AT3G54830 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 4.0e-12 74.7 84 50.0
CANSAT56G4283 Cannabis sativa HOM05D000425 ORTHO05D000373 4.0e-12 74.7 97 46.4
CDE05G0235 Ceratophyllum demersum HOM05D000425 ORTHO05D000373 5.2e-12 74.3 82 45.1
arahy.Tifrunner.gnm1.ann1.BC87BJ Arachis hypogaea HOM05D000425 ORTHO05D000373 8.9e-12 73.6 82 50.0
arahy.Tifrunner.gnm1.ann1.N0MV1J Arachis hypogaea HOM05D000425 ORTHO05D000373 8.9e-12 73.6 82 50.0
TPR.G1950 Trifolium pratense HOM05D000425 ORTHO05D000373 8.9e-12 73.6 81 50.6
Cpa.g.sc53.114 Carica papaya HOM05D000425 ORTHO05D000373 1.5e-11 72.8 78 48.7
C04p67060 Brassica napus HOM05D000425 ORTHO05D000373 2.0e-11 72.4 83 47.0
BolC4t28208H Brassica oleracea HOM05D000425 ORTHO05D000373 2.0e-11 72.4 83 47.0
Manes.10G049300 Manihot esculenta HOM05D000425 ORTHO05D000373 2.0e-11 72.4 82 50.0
Solyc11g008440.3 Solanum lycopersicum HOM05D000425 ORTHO05D000373 2.0e-11 72.4 89 46.1
vmacro07124 Vaccinium macrocarpon HOM05D000425 ORTHO05D000373 2.0e-11 72.4 81 51.9
Aa31sc66G20 Aethionema arabicum HOM05D000425 ORTHO05D000373 2.6e-11 72.0 81 46.9
Oeu000807.1 Olea europaea HOM05D000425 ORTHO05D000373 3.4e-11 71.6 84 46.4
Actinidia32438 Actinidia chinensis HOM05D000425 ORTHO05D000373 4.4e-11 71.2 79 50.6
Sabra10G0174200 Salix brachista HOM05D000425 ORTHO05D000373 4.4e-11 71.2 84 51.2
Nn2g13759 Nelumbo nucifera HOM05D000425 ORTHO05D000373 7.5e-11 70.5 81 48.1
PGR142G1800 Punica granatum HOM05D000425 ORTHO05D000373 7.5e-11 70.5 82 52.4
GSVIVG01016234001 Vitis vinifera HOM05D000425 ORTHO05D000373 9.8e-11 70.1 79 48.1
ATR0680G312 Amborella trichopoda HOM05D000425 ORTHO05D000373 2.2e-10 68.9 84 46.4
DCAR_019091 Daucus carota HOM05D000425 ORTHO05D000373 2.2e-10 68.9 80 47.5
Ca_10549_v3 Cicer arietinum L. HOM05D000425 ORTHO05D000373 2.8e-10 68.6 80 48.8
Duzib114G0694 Durio zibethinus HOM05D000425 ORTHO05D000373 3.7e-10 68.2 82 46.3
Manes.07G095400 Manihot esculenta HOM05D000425 ORTHO05D000373 3.7e-10 68.2 83 49.4
CARHR133890 Cardamine hirsuta HOM05D000425 ORTHO05D000373 6.3e-10 67.4 83 48.2
Ciclev10031131m.g Citrus clementina HOM05D000425 ORTHO05D000373 6.3e-10 67.4 84 45.2
Potri.010G226000 Populus trichocarpa HOM05D000425 ORTHO05D000373 6.3e-10 67.4 85 49.4
vmacro04853 Vaccinium macrocarpon HOM05D000425 ORTHO05D000373 6.3e-10 67.4 79 46.8
A04p29800 Brassica napus HOM05D000425 ORTHO05D000373 8.3e-10 67.0 84 41.7
BraA04t18442Z Brassica rapa HOM05D000425 ORTHO05D000373 8.3e-10 67.0 84 41.7
PSO063G3625 Papaver somniferum HOM05D000425 ORTHO05D000373 8.3e-10 67.0 81 44.4
QL08p054920 Quercus lobata HOM05D000425 ORTHO05D000373 8.3e-10 67.0 83 45.8
DCAR_019090 Daucus carota HOM05D000425 ORTHO05D000373 1.1e-09 66.6 81 48.1
Dinv36404 Davidia involucrata HOM05D000425 ORTHO05D000373 1.1e-09 66.6 79 48.1
unitig_749.g13570 Utricularia gibba HOM05D000425 ORTHO05D000373 1.4e-09 66.2 83 42.2
CDE11G0827 Ceratophyllum demersum HOM05D000425 ORTHO05D000373 1.8e-09 65.9 83 45.8
COL.COLO4_12181 Corchorus olitorius HOM05D000425 ORTHO05D000373 1.8e-09 65.9 84 45.2
Eucgr.J01066 Eucalyptus grandis HOM05D000425 ORTHO05D000373 1.8e-09 65.9 91 41.8
Medtr1g094620 Medicago truncatula HOM05D000425 ORTHO05D000373 1.8e-09 65.9 81 48.1
Duzib106G1504 Durio zibethinus HOM05D000009 ORTHO05D000008 2.4e-09 65.5 51 62.7
MBI17_g12508_MAGBIO Magnolia biondii HOM05D000425 ORTHO05D000373 3.1e-09 65.1 85 47.1
Hma1.2p1_0438F.1_g153100 Hydrangea macrophylla HOM05D000425 ORTHO05D000373 4.1e-09 64.7 79 45.6
Thhalv10016467m.g Eutrema salsugineum HOM05D000425 ORTHO05D000373 5.4e-09 64.3 35 77.1
SalBow4G1724 Salvia bowleyana HOM05D000425 ORTHO05D000373 5.4e-09 64.3 79 43.0
SalBow4G1926 Salvia bowleyana HOM05D000425 ORTHO05D000373 5.4e-09 64.3 79 43.0
HPP92_022587 Vanilla planifolia HOM05D000425 ORTHO05D000373 5.4e-09 64.3 85 42.4
Lsat_1_v5_gn_3_124180 Lactuca sativa HOM05D001630 ORTHO05D002505 1.2e-08 63.2 62 58.1
EL10Ac7g16775 Beta vulgaris HOM05D000425 ORTHO05D000373 2.0e-08 62.4 81 45.7
BcaB02g09142 Brassica carinata HOM05D000425 ORTHO05D000373 2.0e-08 62.4 82 42.7
Nitab4.5_0002233g0010 Nicotiana tabacum HOM05D000425 ORTHO05D000373 7.8e-08 60.5 88 38.6
Peaxi162Scf00253g00417 Petunia axillaris HOM05D000425 ORTHO05D000373 7.8e-08 60.5 80 48.8
Atru.chr12.830 Acer truncatum HOM05D000425 ORTHO05D000373 1.0e-07 60.1 84 45.2
MELO3C012409.2 Cucumis melo HOM05D000425 ORTHO05D000373 1.0e-07 60.1 40 62.5
Solyc03g063030.4 Solanum lycopersicum HOM05D000425 ORTHO05D000373 1.0e-07 60.1 80 42.5
Sopen03g015310 Solanum pennellii HOM05D000425 ORTHO05D000373 1.0e-07 60.1 80 40.0
PGSC0003DMG400013962 Solanum tuberosum HOM05D000425 ORTHO05D000373 1.0e-07 60.1 80 42.5
CsaV3_5G036080 Cucumis sativus L. HOM05D000425 ORTHO05D000373 1.3e-07 59.7 35 68.6
CARHR164780 Cardamine hirsuta HOM05D000425 ORTHO05D000373 1.7e-07 59.3 84 39.3
Nitab4.5_0004325g0070 Nicotiana tabacum HOM05D000425 ORTHO05D000373 1.7e-07 59.3 89 40.4
Nitab4.5_0004385g0030 Nicotiana tabacum HOM05D000425 ORTHO05D000373 1.7e-07 59.3 89 40.4
CAN.G321.40 Capsicum annuum HOM05D000425 ORTHO05D000373 2.3e-07 58.9 88 37.5
Sed0017499 Sechium edule HOM05D000425 ORTHO05D000373 2.9e-07 58.5 80 41.2
Nitab4.5_0000819g0070 Nicotiana tabacum HOM05D000425 ORTHO05D000373 6.6e-07 57.4 84 38.1
Peaxi162Scf00662g00415 Petunia axillaris HOM05D000425 ORTHO05D000373 1.5e-06 56.2 88 35.2
Zm00001eb087950 Zea mays HOM05D000425 ORTHO05D000373 1.5e-06 56.2 33 69.7
CSS0006346 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 3.3e-06 55.1 77 41.6
SEGI_21934 Sequoiadendron giganteum HOM05D000425 ORTHO05D000373 3.3e-06 55.1 75 40.0


User provided reference genes

Program Settings