Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9153 Trifolium pratense HOM05D002747 ORTHO05D003069 4.5e-36 154.5 101 100.0
Medtr8g013030 Medicago truncatula HOM05D002747 ORTHO05D003069 4.5e-20 101.3 57 93.0
Phvul.010G020300 Phaseolus vulgaris HOM05D002747 ORTHO05D003069 5.9e-20 100.9 101 76.2
Psat4g200400 Pisum sativum HOM05D002747 ORTHO05D003069 1.8e-16 89.4 56 80.4
Gohir.D07G206600 Gossypium hirsutum HOM05D002747 ORTHO05D003069 3.9e-16 88.2 101 60.4
FvH4_4g13780 Fragaria vesca HOM05D002747 ORTHO05D003069 5.1e-16 87.8 100 68.0
Gorai.001G232900 Gossypium raimondii HOM05D002747 ORTHO05D003069 2.0e-15 85.9 101 58.4
Gohir.A07G200300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 2.6e-15 85.5 101 52.5
Ciclev10005062m.g Citrus clementina HOM05D002747 ORTHO05D003069 3.3e-15 85.1 100 68.0
CAN.G767.5 Capsicum annuum HOM05D002747 ORTHO05D003069 4.4e-15 84.7 101 64.4
AT1G04850 Arabidopsis thaliana HOM05D002747 ORTHO05D003069 7.4e-15 84.0 101 59.4
EL10Ac3g07480 Beta vulgaris HOM05D002747 ORTHO05D003069 1.7e-14 82.8 100 50.0
RcHm_v2.0_Chr4g0414661 Rosa chinensis HOM05D002747 ORTHO05D003069 1.7e-14 82.8 100 68.0
Aa31LG1G19860 Aethionema arabicum HOM05D002747 ORTHO05D003069 3.7e-14 81.6 100 63.0
ATR0609G128 Amborella trichopoda HOM05D002747 ORTHO05D003069 3.7e-14 81.6 100 66.0
TAR633G0888 Trochodendron aralioides HOM05D002747 ORTHO05D003069 3.7e-14 81.6 100 67.0
AT5G48690 Arabidopsis thaliana HOM05D002747 ORTHO05D003069 4.8e-14 81.3 103 49.5
FAN22G0083 Fragaria x ananassa HOM05D002747 ORTHO05D003069 4.8e-14 81.3 100 66.0
Solyc12g098420.3 Solanum lycopersicum HOM05D002747 ORTHO05D003069 4.8e-14 81.3 100 61.0
Sopen12g033200 Solanum pennellii HOM05D002747 ORTHO05D003069 4.8e-14 81.3 100 61.0
Atru.chr6.1415 Acer truncatum HOM05D002747 ORTHO05D003069 8.2e-14 80.5 101 52.5
AL1G14570 Arabidopsis lyrata HOM05D002747 ORTHO05D003069 8.2e-14 80.5 101 63.4
A10p03300 Brassica napus HOM05D002747 ORTHO05D003069 8.2e-14 80.5 100 65.0
BolC5t29084H Brassica oleracea HOM05D002747 ORTHO05D003069 8.2e-14 80.5 100 65.0
BraA10t42604Z Brassica rapa HOM05D002747 ORTHO05D003069 8.2e-14 80.5 100 65.0
SEGI_05435 Sequoiadendron giganteum HOM05D002747 ORTHO05D003069 8.2e-14 80.5 102 62.7
CDE05G0937 Ceratophyllum demersum HOM05D002747 ORTHO05D003069 1.1e-13 80.1 100 64.0
PGSC0003DMG401004570 Solanum tuberosum HOM05D002747 ORTHO05D003069 1.1e-13 80.1 100 60.0
Atru.chr4.1669 Acer truncatum HOM05D002747 ORTHO05D003069 1.4e-13 79.7 100 65.0
AL8G21770 Arabidopsis lyrata HOM05D002747 ORTHO05D003069 1.4e-13 79.7 101 47.5
Duzib133G0088 Durio zibethinus HOM05D002747 ORTHO05D003069 1.4e-13 79.7 101 57.4
BcaB02g06896 Brassica carinata HOM05D002747 ORTHO05D003069 1.8e-13 79.3 100 65.0
BcaB03g13469 Brassica carinata HOM05D002747 ORTHO05D003069 1.8e-13 79.3 100 65.0
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 1.8e-13 79.3 101 62.4
Thhalv10004673m.g Eutrema salsugineum HOM05D002747 ORTHO05D003069 1.8e-13 79.3 102 46.1
PGR083G0467 Punica granatum HOM05D002747 ORTHO05D003069 1.8e-13 79.3 100 65.0
Sp2g19100 Schrenkiella parvula HOM05D002747 ORTHO05D003069 1.8e-13 79.3 102 52.9
BcaC07g36875 Brassica carinata HOM05D002747 ORTHO05D003069 2.4e-13 79.0 100 65.0
A08p36680 Brassica napus HOM05D002747 ORTHO05D003069 2.4e-13 79.0 100 65.0
C08p01530 Brassica napus HOM05D002747 ORTHO05D003069 2.4e-13 79.0 100 65.0
Nitab4.5_0000850g0120 Nicotiana tabacum HOM05D002747 ORTHO05D003069 2.4e-13 79.0 100 62.0
DCAR_024465 Daucus carota HOM05D002747 ORTHO05D003069 3.1e-13 78.6 100 65.0
Glyma.08G112000 Glycine max HOM05D002747 ORTHO05D003069 3.1e-13 78.6 100 62.0
Prupe.8G200600 Prunus persica HOM05D002747 ORTHO05D003069 3.1e-13 78.6 101 47.5
A06p38970 Brassica napus HOM05D002747 ORTHO05D003069 4.1e-13 78.2 102 46.1
BraA06t26811Z Brassica rapa HOM05D002747 ORTHO05D003069 4.1e-13 78.2 102 46.1
CSS0010384 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 4.1e-13 78.2 100 65.0
CSS0018864 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 4.1e-13 78.2 100 65.0
HanXRQChr10g0279431 Helianthus annuus HOM05D002747 ORTHO05D003069 4.1e-13 78.2 107 44.9
Nitab4.5_0000676g0100 Nicotiana tabacum HOM05D002747 ORTHO05D003069 4.1e-13 78.2 100 62.0
Sed0019212 Sechium edule HOM05D002747 ORTHO05D003069 4.1e-13 78.2 100 62.0
FAN12G1649 Fragaria x ananassa HOM05D002747 ORTHO05D003069 5.3e-13 77.8 100 64.0
Migut.N00399 Erythranthe guttata HOM05D002747 ORTHO05D003069 7.0e-13 77.4 100 56.0
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 7.0e-13 77.4 101 51.5
Thecc.01G222600 Theobroma cacao HOM05D002747 ORTHO05D003069 9.1e-13 77.0 101 49.5
CSS0022664 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 1.2e-12 76.6 114 54.4
Duzib268G0508 Durio zibethinus HOM05D002747 ORTHO05D003069 1.6e-12 76.3 101 66.3
CANSAT78G0345 Cannabis sativa HOM05D002747 ORTHO05D003069 2.0e-12 75.9 100 46.0
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 2.6e-12 75.5 100 47.0
AUR62020830 Chenopodium quinoa HOM05D002747 ORTHO05D003069 3.5e-12 75.1 105 48.6
FvH4_2g18750 Fragaria vesca HOM05D002747 ORTHO05D003069 3.5e-12 75.1 101 45.5
FAN24G0431 Fragaria x ananassa HOM05D002747 ORTHO05D003069 3.5e-12 75.1 101 45.5
Lalb_Chr12g0205501 Lupinus albus HOM05D002747 ORTHO05D003069 3.5e-12 75.1 100 63.0
PSO170G5398 Papaver somniferum HOM05D002747 ORTHO05D003069 3.5e-12 75.1 101 61.4
PSO357G0187 Papaver somniferum HOM05D002747 ORTHO05D003069 3.5e-12 75.1 101 61.4
Sp1g03690 Schrenkiella parvula HOM05D002747 ORTHO05D003069 3.5e-12 75.1 100 63.0
Potri.001G316400 Populus trichocarpa HOM05D002747 ORTHO05D003069 4.5e-12 74.7 100 63.0
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 5.9e-12 74.3 100 46.0
C07p39360 Brassica napus HOM05D002747 ORTHO05D003069 7.7e-12 73.9 101 47.5
DCAR_000522 Daucus carota HOM05D002747 ORTHO05D003069 7.7e-12 73.9 104 59.6
FAN15G0280 Fragaria x ananassa HOM05D002747 ORTHO05D003069 7.7e-12 73.9 101 45.5
Lj3g0012882 Lotus japonicus HOM05D002747 ORTHO05D003069 1.0e-11 73.6 103 64.1
MD05G1173000 Malus domestica HOM05D002747 ORTHO05D003069 1.0e-11 73.6 102 62.7
Sc25g0005830 Simmondsia chinensis HOM05D002747 ORTHO05D003069 1.0e-11 73.6 100 64.0
Thecc.04G200800 Theobroma cacao HOM05D002747 ORTHO05D003069 1.0e-11 73.6 100 66.0
TWI53G0635 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 1.0e-11 73.6 100 65.0
unitig_22.g6824 Utricularia gibba HOM05D002747 ORTHO05D003069 1.0e-11 73.6 100 64.0
CiPaw.03G147500 Carya illinoinensis HOM05D002747 ORTHO05D003069 1.3e-11 73.2 102 59.8
Duzib151G1154 Durio zibethinus HOM05D002747 ORTHO05D003069 1.3e-11 73.2 100 64.0
Actinidia23716 Actinidia chinensis HOM05D002747 ORTHO05D003069 1.7e-11 72.8 107 54.2
BolC7t44456H Brassica oleracea HOM05D002747 ORTHO05D003069 1.7e-11 72.8 101 46.5
Peaxi162Scf00652g00122 Petunia axillaris HOM05D002747 ORTHO05D003069 1.7e-11 72.8 100 59.0
RcHm_v2.0_Chr6g0284441 Rosa chinensis HOM05D002747 ORTHO05D003069 1.7e-11 72.8 101 45.5
GSVIVG01020909001 Vitis vinifera HOM05D002747 ORTHO05D003069 1.7e-11 72.8 100 64.0
BolC8t46958H Brassica oleracea HOM05D002747 ORTHO05D003069 2.2e-11 72.4 101 61.4
BraA08t35571Z Brassica rapa HOM05D002747 ORTHO05D003069 2.2e-11 72.4 101 61.4
THA.LOC104826121 Tarenaya hassleriana HOM05D002747 ORTHO05D003069 2.2e-11 72.4 100 64.0
CARHR183210 Cardamine hirsuta HOM05D002747 ORTHO05D003069 3.8e-11 71.6 104 42.3
CSS0015960 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 6.5e-11 70.9 100 47.0
Cfa014907 Carpinus fangiana HOM05D002747 ORTHO05D003069 6.5e-11 70.9 101 62.4
Ciclev10021209m.g Citrus clementina HOM05D002747 ORTHO05D003069 6.5e-11 70.9 101 46.5
Thhalv10007758m.g Eutrema salsugineum HOM05D002747 ORTHO05D003069 6.5e-11 70.9 100 61.0
Migut.D02495 Erythranthe guttata HOM05D002747 ORTHO05D003069 1.1e-10 70.1 109 44.0
PGR044G2315 Punica granatum HOM05D002747 ORTHO05D003069 1.1e-10 70.1 101 44.6
TWI18G0343 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 1.1e-10 70.1 107 43.9
arahy.Tifrunner.gnm1.ann1.0B3YJA Arachis hypogaea HOM05D002747 ORTHO05D003069 1.9e-10 69.3 77 55.8
BcaC05g24434 Brassica carinata HOM05D002747 ORTHO05D003069 2.5e-10 68.9 100 53.0
Lj3C402G3 Lonicera japonica HOM05D002747 ORTHO05D003069 2.5e-10 68.9 100 62.0
Medtr8g085380 Medicago truncatula HOM05D002747 ORTHO05D003069 2.5e-10 68.9 100 60.0
Sabra16G0200100 Salix brachista HOM05D002747 ORTHO05D003069 2.5e-10 68.9 124 43.5
CiPaw.01G120100 Carya illinoinensis HOM05D002747 ORTHO05D003069 3.2e-10 68.6 100 63.0
THA.LOC104801025 Tarenaya hassleriana HOM05D002747 ORTHO05D003069 3.2e-10 68.6 100 61.0
Dinv27226 Davidia involucrata HOM05D002747 ORTHO05D003069 4.2e-10 68.2 100 62.0
BcaC06g30767 Brassica carinata HOM05D002747 ORTHO05D003069 7.2e-10 67.4 101 43.6
Haze_24849 Corylus avellana HOM05D002747 ORTHO05D003069 7.2e-10 67.4 101 45.5
Sabra02G0186000 Salix brachista HOM05D002747 ORTHO05D003069 7.2e-10 67.4 101 45.5
Hund24396 Selenicereus undatus HOM05D002747 ORTHO05D003069 7.2e-10 67.4 99 60.6
Cfa002598 Carpinus fangiana HOM05D002747 ORTHO05D003069 1.2e-09 66.6 101 44.6
FAN27G3095 Fragaria x ananassa HOM05D002747 ORTHO05D003069 1.2e-09 66.6 101 51.5
Manes.03G146600 Manihot esculenta HOM05D002747 ORTHO05D003069 1.2e-09 66.6 100 61.0
THA.LOC104802663 Tarenaya hassleriana HOM05D002747 ORTHO05D003069 1.2e-09 66.6 104 59.6
EL10Ac7g17875 Beta vulgaris HOM05D002747 ORTHO05D003069 1.6e-09 66.2 102 44.1
Eucgr.H02771 Eucalyptus grandis HOM05D002747 ORTHO05D003069 1.6e-09 66.2 100 59.0
Lalb_Chr13g0294891 Lupinus albus HOM05D002747 ORTHO05D003069 1.6e-09 66.2 100 60.0
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.6e-09 66.2 57 61.4
Ah.13g078100 Amaranthus hybridus HOM05D002747 ORTHO05D003069 2.7e-09 65.5 100 60.0
SalBow6G2541 Salvia bowleyana HOM05D002747 ORTHO05D003069 2.7e-09 65.5 104 44.2
SalBow6G4014 Salvia bowleyana HOM05D002747 ORTHO05D003069 2.7e-09 65.5 104 44.2
Oeu018496.2 Olea europaea HOM05D002747 ORTHO05D003069 3.6e-09 65.1 109 57.8
Oeu018497.1 Olea europaea HOM05D002747 ORTHO05D003069 3.6e-09 65.1 109 57.8
Potri.017G056900 Populus trichocarpa HOM05D002747 ORTHO05D003069 4.7e-09 64.7 100 61.0
QL09p052152 Quercus lobata HOM05D002747 ORTHO05D003069 4.7e-09 64.7 102 49.0
QL09p053028 Quercus lobata HOM05D002747 ORTHO05D003069 4.7e-09 64.7 102 49.0
SGA_v2.0_scaffold128G34075 Striga asiatica HOM05D002747 ORTHO05D003069 1.0e-08 63.5 100 59.0
CiPaw.04G104400 Carya illinoinensis HOM05D002747 ORTHO05D003069 1.4e-08 63.2 101 58.4
Glyma.16G100800 Glycine max HOM05D002747 ORTHO05D003069 1.4e-08 63.2 102 61.8
Lj4g0002017 Lotus japonicus HOM05D002747 ORTHO05D003069 1.4e-08 63.2 100 58.0
Phvul.003G290800 Phaseolus vulgaris HOM05D002747 ORTHO05D003069 1.4e-08 63.2 100 57.0
arahy.Tifrunner.gnm1.ann1.12L8KL Arachis hypogaea HOM05D002747 ORTHO05D003069 1.8e-08 62.8 100 59.0
Lsat_1_v5_gn_9_13141 Lactuca sativa HOM05D002747 ORTHO05D003069 1.8e-08 62.8 118 41.5
SGA_v2.0_scaffold18G08325 Striga asiatica HOM05D002747 ORTHO05D003069 1.8e-08 62.8 107 42.1
Actinidia11421 Actinidia chinensis HOM05D002747 ORTHO05D003069 2.3e-08 62.4 100 60.0
Nn1g07916 Nelumbo nucifera HOM05D002747 ORTHO05D003069 2.3e-08 62.4 100 58.0
Potri.002G244500 Populus trichocarpa HOM05D002747 ORTHO05D003069 2.3e-08 62.4 102 60.8
TAR362G0277 Trochodendron aralioides HOM05D002747 ORTHO05D003069 3.0e-08 62.0 101 57.4
CsaV3_2G011630 Cucumis sativus L. HOM05D002747 ORTHO05D003069 4.0e-08 61.6 100 58.0
Actinidia39241 Actinidia chinensis HOM05D002747 ORTHO05D003069 5.2e-08 61.2 100 60.0
Cc01_g16840 Coffea canephora HOM05D002747 ORTHO05D003069 5.2e-08 61.2 106 44.3
CARHR004240 Cardamine hirsuta HOM05D002747 ORTHO05D003069 6.7e-08 60.8 101 52.5
Cc03_g07950 Coffea canephora HOM05D002747 ORTHO05D003069 6.7e-08 60.8 100 57.0
Nitab4.5_0000345g0060 Nicotiana tabacum HOM05D002747 ORTHO05D003069 6.7e-08 60.8 110 53.6
arahy.Tifrunner.gnm1.ann1.LZLC15 Arachis hypogaea HOM05D002747 ORTHO05D003069 8.8e-08 60.5 77 58.4
ECA248G3569 Erigeron canadensis HOM05D002747 ORTHO05D003069 1.1e-07 60.1 100 58.0
Aqoxy5G00020 Aquilegia oxysepala HOM05D002747 ORTHO05D003069 1.5e-07 59.7 100 59.0
arahy.Tifrunner.gnm1.ann1.AI5VH5 Arachis hypogaea HOM05D002747 ORTHO05D003069 1.5e-07 59.7 100 57.0
vmacro15549 Vaccinium macrocarpon HOM05D002747 ORTHO05D003069 1.5e-07 59.7 99 58.6
MSTRG.18842 Avicennia marina HOM05D002747 ORTHO05D003069 2.0e-07 59.3 107 54.2
AUR62001114 Chenopodium quinoa HOM05D002747 ORTHO05D003069 2.0e-07 59.3 108 55.6
MD04G1012000 Malus domestica HOM05D002747 ORTHO05D003069 2.0e-07 59.3 100 55.0
vmacro14744 Vaccinium macrocarpon HOM05D002747 ORTHO05D003069 2.0e-07 59.3 107 40.2
HPP92_021423 Vanilla planifolia HOM05D002747 ORTHO05D003069 2.0e-07 59.3 100 50.0
Carub.0001s0409 Capsella rubella HOM05D002747 ORTHO05D003069 4.4e-07 58.2 101 53.5
Psat7g074280 Pisum sativum HOM05D002747 ORTHO05D003069 4.4e-07 58.2 100 55.0
QL06p025333 Quercus lobata HOM05D002747 ORTHO05D003069 4.4e-07 58.2 100 58.0
AUR62018589 Chenopodium quinoa HOM05D002747 ORTHO05D003069 9.7e-07 57.0 81 44.4
Prupe.1G010500 Prunus persica HOM05D002747 ORTHO05D003069 9.7e-07 57.0 100 54.0
Hund18420 Selenicereus undatus HOM05D002747 ORTHO05D003069 1.3e-06 56.6 101 42.6
SalBow3G3614 Salvia bowleyana HOM05D002747 ORTHO05D003069 1.7e-06 56.2 81 44.4
MSTRG.21971 Avicennia marina HOM05D002747 ORTHO05D003069 2.2e-06 55.8 100 55.0
RcHm_v2.0_Chr6g0284421 Rosa chinensis HOM05D002747 ORTHO05D003069 3.7e-06 55.1 101 37.6
Ah.08g214490 Amaranthus hybridus HOM05D002747 ORTHO05D003069 4.8e-06 54.7 105 57.1
Peaxi162Scf00398g00919 Petunia axillaris HOM05D002747 ORTHO05D003069 4.8e-06 54.7 110 50.9
PGSC0003DMG400026879 Solanum tuberosum HOM05D002747 ORTHO05D003069 4.8e-06 54.7 110 42.7


User provided reference genes

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