Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9139 Trifolium pratense HOM05D002350 ORTHO05D000091 1.1e-43 179.5 87 100.0
Medtr8g064670 Medicago truncatula HOM05D002350 ORTHO05D000091 5.8e-40 167.2 82 96.3
TPR.G40047 Trifolium pratense HOM05D002350 ORTHO05D000091 3.2e-38 161.4 82 93.9
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 1.2e-32 142.9 82 81.7
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 1.2e-29 132.9 82 75.6
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 2.3e-25 118.6 82 68.3
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 8.9e-25 116.7 83 68.7
Ca_25564_v3 Cicer arietinum L. HOM05D002350 ORTHO05D000091 2.6e-24 115.2 82 70.7
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 1.9e-19 99.0 80 55.0
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 3.3e-19 98.2 81 53.1
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 3.3e-19 98.2 81 53.1
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 3.3e-19 98.2 81 53.1
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 4.3e-19 97.8 81 54.3
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 4.3e-19 97.8 81 56.8
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 2.1e-18 95.5 81 51.9
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 4.7e-18 94.4 80 52.5
Eucgr.C03763 Eucalyptus grandis HOM05D002350 ORTHO05D000091 1.1e-17 93.2 80 53.8
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 1.8e-17 92.4 79 48.1
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 2.4e-17 92.0 82 53.7
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 3.1e-17 91.7 80 57.5
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 3.1e-17 91.7 80 51.2
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 4.0e-17 91.3 80 57.5
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 4.0e-17 91.3 81 53.1
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 5.2e-17 90.9 80 56.2
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 6.8e-17 90.5 81 46.9
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 6.8e-17 90.5 81 46.9
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 6.8e-17 90.5 81 48.1
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 8.9e-17 90.1 77 50.6
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 8.9e-17 90.1 80 51.2
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 8.9e-17 90.1 82 52.4
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 8.9e-17 90.1 81 49.4
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 1.5e-16 89.4 79 50.6
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 1.5e-16 89.4 80 47.5
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 2.0e-16 89.0 79 45.6
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 2.0e-16 89.0 82 53.7
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 2.6e-16 88.6 81 45.7
BolC8t51798H Brassica oleracea HOM05D002350 ORTHO05D000091 2.6e-16 88.6 81 45.7
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 2.6e-16 88.6 81 46.9
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 2.6e-16 88.6 80 50.0
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 4.4e-16 87.8 81 49.4
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 7.6e-16 87.0 81 44.4
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 7.6e-16 87.0 80 50.0
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 7.6e-16 87.0 81 48.1
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 9.9e-16 86.7 81 45.7
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 9.9e-16 86.7 81 48.1
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.3e-15 86.3 82 48.8
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 1.3e-15 86.3 80 48.8
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.7e-15 85.9 83 50.6
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 1.7e-15 85.9 79 50.6
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 2.2e-15 85.5 81 46.9
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 2.2e-15 85.5 88 48.9
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 2.9e-15 85.1 84 50.0
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 4.9e-15 84.3 81 46.9
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 4.9e-15 84.3 82 50.0
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 4.9e-15 84.3 83 50.6
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 6.4e-15 84.0 81 45.7
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 6.4e-15 84.0 77 48.1
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 6.4e-15 84.0 78 46.2
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 6.4e-15 84.0 77 48.1
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 6.4e-15 84.0 73 49.3
Peaxi162Scf00665g00310 Petunia axillaris HOM05D002350 ORTHO05D000091 8.4e-15 83.6 87 46.0
Solyc12g008420.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 8.4e-15 83.6 83 50.6
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 8.4e-15 83.6 83 50.6
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 1.1e-14 83.2 72 45.8
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 1.4e-14 82.8 80 46.2
CDE05G3285 Ceratophyllum demersum HOM05D002350 ORTHO05D000091 1.4e-14 82.8 81 43.2
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 1.9e-14 82.4 84 45.2
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 2.4e-14 82.0 79 49.4
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.2e-14 81.6 79 49.4
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 4.2e-14 81.3 82 42.7
EL10Ac8g18396 Beta vulgaris HOM05D002350 ORTHO05D000091 4.2e-14 81.3 79 45.6
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 7.1e-14 80.5 81 44.4
PGSC0003DMG401000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 7.1e-14 80.5 83 48.2
FAN28G2427 Fragaria x ananassa HOM05D002350 ORTHO05D000091 1.2e-13 79.7 79 48.1
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 1.2e-13 79.7 81 43.2
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 1.6e-13 79.3 80 47.5
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 2.7e-13 78.6 79 49.4
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 3.5e-13 78.2 79 45.6
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 3.5e-13 78.2 80 41.2
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 4.6e-13 77.8 79 49.4
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 4.6e-13 77.8 80 43.8
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 4.6e-13 77.8 75 45.3
vmacro06244 Vaccinium macrocarpon HOM05D002350 ORTHO05D000091 4.6e-13 77.8 81 45.7
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 6.0e-13 77.4 77 42.9
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 6.0e-13 77.4 80 45.0
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 7.8e-13 77.0 84 40.5
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 7.8e-13 77.0 80 43.8
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 7.8e-13 77.0 80 43.8
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 1.0e-12 76.6 64 54.7
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 1.3e-12 76.3 80 45.0
Rhsim03G0237700 Rhododendron simsii HOM05D002350 ORTHO05D000091 1.7e-12 75.9 85 43.5
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 2.3e-12 75.5 82 43.9
A07p00720 Brassica napus HOM05D002350 ORTHO05D000091 3.0e-12 75.1 83 39.8
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 3.0e-12 75.1 84 44.0
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 3.9e-12 74.7 77 46.8
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 3.9e-12 74.7 63 52.4
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 3.9e-12 74.7 79 41.8
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 3.9e-12 74.7 79 46.8
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 5.1e-12 74.3 66 42.4
Sopen06g017040 Solanum pennellii HOM05D002350 ORTHO05D000091 5.1e-12 74.3 79 46.8
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 6.6e-12 73.9 85 38.8
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 6.6e-12 73.9 76 46.1
Os01g0197900 Oryza sativa ssp. japonica HOM05D002350 ORTHO05D000091 6.6e-12 73.9 83 41.0
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 8.7e-12 73.6 85 37.6
Lsat_1_v5_gn_5_144600 Lactuca sativa HOM05D002350 ORTHO05D000091 8.7e-12 73.6 69 52.2
MBI04_g17295_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 8.7e-12 73.6 82 41.5
CAN.G160.37 Capsicum annuum HOM05D002350 ORTHO05D000091 1.1e-11 73.2 79 46.8
PSO832G0190 Papaver somniferum HOM05D002350 ORTHO05D000091 1.1e-11 73.2 82 46.3
BcaB03g16780 Brassica carinata HOM05D002350 ORTHO05D000091 1.5e-11 72.8 80 38.8
CARHR110360 Cardamine hirsuta HOM05D002350 ORTHO05D000091 1.5e-11 72.8 81 42.0
AUR62010903 Chenopodium quinoa HOM05D002350 ORTHO05D000091 2.5e-11 72.0 80 45.0
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 3.3e-11 71.6 80 43.8
Nitab4.5_0001354g0020 Nicotiana tabacum HOM05D002350 ORTHO05D000091 3.3e-11 71.6 79 45.6
FvH4_1g09718 Fragaria vesca HOM05D002350 ORTHO05D000091 4.3e-11 71.2 77 45.5
C07p01730 Brassica napus HOM05D002350 ORTHO05D000091 7.3e-11 70.5 79 39.2
AUR62021425 Chenopodium quinoa HOM05D002350 ORTHO05D000091 7.3e-11 70.5 70 44.3
SalBow5G4215 Salvia bowleyana HOM05D002350 ORTHO05D000091 7.3e-11 70.5 64 56.2
Hund26256 Selenicereus undatus HOM05D002350 ORTHO05D000091 1.3e-10 69.7 76 46.1
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 1.3e-10 69.7 82 43.9
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 1.6e-10 69.3 79 40.5
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.6e-10 69.3 64 50.0
HanXRQChr16g0503781 Helianthus annuus HOM05D002350 ORTHO05D000091 1.6e-10 69.3 74 44.6
MBI04_g40931_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 1.6e-10 69.3 76 42.1
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 1.6e-10 69.3 79 41.8
BcaC04g19659 Brassica carinata HOM05D002350 ORTHO05D000091 2.8e-10 68.6 64 48.4
DCAR_018431 Daucus carota HOM05D002350 ORTHO05D000091 2.8e-10 68.6 64 46.9
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 3.6e-10 68.2 80 41.2
CAN.G90.12 Capsicum annuum HOM05D002350 ORTHO05D000091 3.6e-10 68.2 60 51.7
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 4.8e-10 67.8 79 40.5
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 4.8e-10 67.8 79 40.5
Migut.N01381 Erythranthe guttata HOM05D002350 ORTHO05D000091 6.2e-10 67.4 61 54.1
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 6.2e-10 67.4 79 40.5
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 6.2e-10 67.4 79 40.5
Nitab4.5_0000165g0030 Nicotiana tabacum HOM05D002350 ORTHO05D000091 6.2e-10 67.4 79 43.0
Rhsim03G0238400 Rhododendron simsii HOM05D002350 ORTHO05D000091 6.2e-10 67.4 78 41.0
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 8.1e-10 67.0 84 36.9
Os01g0198000 Oryza sativa ssp. japonica HOM05D002350 ORTHO05D000091 8.1e-10 67.0 77 37.7
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 8.1e-10 67.0 81 38.3
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 1.1e-09 66.6 79 40.5
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 1.8e-09 65.9 82 43.9
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 1.8e-09 65.9 80 43.8
RcHm_v2.0_Chr2g0091731 Rosa chinensis HOM05D002350 ORTHO05D000091 1.8e-09 65.9 88 39.8
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 1.8e-09 65.9 80 41.2
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 3.1e-09 65.1 78 38.5
DCAR_010692 Daucus carota HOM05D002350 ORTHO05D000091 5.3e-09 64.3 81 42.0
RcHm_v2.0_Chr2g0091691 Rosa chinensis HOM05D002350 ORTHO05D000091 6.9e-09 63.9 60 46.7
SEGI_40988 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 9.0e-09 63.5 78 41.0
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 1.2e-08 63.2 63 52.4
CARHR110340 Cardamine hirsuta HOM05D002350 ORTHO05D000091 1.2e-08 63.2 56 53.6
AUR62021424 Chenopodium quinoa HOM05D002350 ORTHO05D000091 2.6e-08 62.0 62 50.0
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 2.6e-08 62.0 78 39.7
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 5.8e-08 60.8 80 38.8
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 1.3e-07 59.7 57 43.9
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 2.2e-07 58.9 60 38.3
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 3.8e-07 58.2 68 45.6
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 1.9e-06 55.8 80 33.8
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 5.4e-06 54.3 47 46.8
CAN.G212.6 Capsicum annuum HOM05D002350 ORTHO05D000091 5.4e-06 54.3 56 46.4


User provided reference genes

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