Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G912 Trifolium pratense HOM05D004695 ORTHO05D005372 6.3e-64 247.3 126 100.0
Medtr2g022610 Medicago truncatula HOM05D004695 ORTHO05D005372 8.9e-50 200.3 118 87.3
Psat1g182680 Pisum sativum HOM05D004695 ORTHO05D005372 1.3e-45 186.4 118 83.9
Ca_00631_v3 Cicer arietinum L. HOM05D004695 ORTHO05D005372 2.0e-41 172.6 117 77.8
Phvul.006G151900 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 2.0e-41 172.6 116 79.3
Glyma.15G105500 Glycine max HOM05D004695 ORTHO05D005372 3.4e-41 171.8 117 80.3
Glyma.13G207100 Glycine max HOM05D004695 ORTHO05D005372 4.4e-41 171.4 118 79.7
Lalb_Chr15g0087411 Lupinus albus HOM05D004695 ORTHO05D005372 1.1e-39 166.8 116 77.6
VMungo0540G1940 Vigna mungo HOM05D004695 ORTHO05D005372 1.3e-37 159.8 117 75.2
Lalb_Chr18g0056181 Lupinus albus HOM05D004695 ORTHO05D005372 3.1e-34 148.7 116 70.7
Phvul.003G091400 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 8.9e-34 147.1 116 67.2
Glyma.07G258100 Glycine max HOM05D004695 ORTHO05D005372 1.5e-33 146.4 116 67.2
Medtr4g131720 Medicago truncatula HOM05D004695 ORTHO05D005372 3.7e-32 141.7 110 70.0
Lj4g0022767 Lotus japonicus HOM05D004695 ORTHO05D005372 8.4e-32 140.6 117 65.8
TPR.G36993 Trifolium pratense HOM05D004695 ORTHO05D005372 2.3e-29 132.5 110 66.4
VMungo1215G1766 Vigna mungo HOM05D004695 ORTHO05D005372 8.1e-27 124.0 115 62.6
Lj6g0025020 Lotus japonicus HOM05D004695 ORTHO05D005372 2.4e-26 122.5 118 66.9
QL06p003781 Quercus lobata HOM05D004695 ORTHO05D005372 1.2e-25 120.2 118 59.3
arahy.Tifrunner.gnm1.ann1.6BH6U4 Arachis hypogaea HOM05D004695 ORTHO05D005372 1.5e-25 119.8 126 61.9
arahy.Tifrunner.gnm1.ann1.NGDM9G Arachis hypogaea HOM05D004695 ORTHO05D005372 1.7e-24 116.3 121 59.5
arahy.Tifrunner.gnm1.ann1.P3SWUI Arachis hypogaea HOM05D004695 ORTHO05D005372 1.7e-24 116.3 121 59.5
GSVIVG01017906001 Vitis vinifera HOM05D004695 ORTHO05D005372 6.4e-24 114.4 115 57.4
Psat4g008520 Pisum sativum HOM05D004695 ORTHO05D005372 1.1e-23 113.6 114 64.9
CiPaw.01G161500 Carya illinoinensis HOM05D004695 ORTHO05D005372 1.2e-22 110.2 118 55.1
Thecc.01G113400 Theobroma cacao HOM05D004695 ORTHO05D005372 2.1e-22 109.4 115 53.9
Manes.03G182700 Manihot esculenta HOM05D004695 ORTHO05D005372 3.5e-22 108.6 116 54.3
RcHm_v2.0_Chr4g0417511 Rosa chinensis HOM05D004695 ORTHO05D005372 3.9e-21 105.1 119 48.7
MD13G1185600 Malus domestica HOM05D004695 ORTHO05D005372 5.1e-21 104.8 114 58.8
Hma1.2p1_0995F.1_g245790 Hydrangea macrophylla HOM05D004695 ORTHO05D005372 1.5e-20 103.2 119 51.3
FAN07G1591 Fragaria x ananassa HOM05D004695 ORTHO05D005372 2.5e-20 102.4 120 53.3
Manes.15G024700 Manihot esculenta HOM05D004695 ORTHO05D005372 2.5e-20 102.4 116 53.4
FvH4_4g14800 Fragaria vesca HOM05D004695 ORTHO05D005372 3.3e-20 102.1 120 50.8
FAN12G3688 Fragaria x ananassa HOM05D004695 ORTHO05D005372 3.3e-20 102.1 120 50.8
Gorai.003G047400 Gossypium raimondii HOM05D004695 ORTHO05D005372 4.3e-20 101.7 116 52.6
Potri.008G204100 Populus trichocarpa HOM05D004695 ORTHO05D005372 7.3e-20 100.9 116 52.6
Duzib264G0758 Durio zibethinus HOM05D004695 ORTHO05D005372 1.3e-19 100.1 118 52.5
FAN22G2275 Fragaria x ananassa HOM05D004695 ORTHO05D005372 1.6e-19 99.8 119 50.4
Sabra08G0157600 Salix brachista HOM05D004695 ORTHO05D005372 2.1e-19 99.4 118 46.6
Gohir.A02G135400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 3.6e-19 98.6 116 51.7
Actinidia23502 Actinidia chinensis HOM05D004695 ORTHO05D005372 6.2e-19 97.8 110 50.9
Gohir.D03G046400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 6.2e-19 97.8 116 51.7
Cc03_g03270 Coffea canephora HOM05D004695 ORTHO05D005372 8.1e-19 97.4 110 50.9
COL.COLO4_11008 Corchorus olitorius HOM05D004695 ORTHO05D005372 1.1e-18 97.1 119 51.3
Ciclev10006235m.g Citrus clementina HOM05D004695 ORTHO05D005372 1.4e-18 96.7 114 53.5
Duzib187G0357 Durio zibethinus HOM05D004695 ORTHO05D005372 1.4e-18 96.7 116 48.3
Prupe.1G153300 Prunus persica HOM05D004695 ORTHO05D005372 1.4e-18 96.7 109 55.0
PGSC0003DMG400008993 Solanum tuberosum HOM05D004695 ORTHO05D005372 1.4e-18 96.7 117 50.4
CANSAT78G0872 Cannabis sativa HOM05D004695 ORTHO05D005372 1.8e-18 96.3 107 54.2
Thecc.04G224700 Theobroma cacao HOM05D004695 ORTHO05D005372 3.1e-18 95.5 94 55.3
Aqoxy2G03294 Aquilegia oxysepala HOM05D004695 ORTHO05D005372 4.0e-18 95.1 115 47.8
TWI73G0302 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 5.3e-18 94.7 122 51.6
Duzib147G1031 Durio zibethinus HOM05D004695 ORTHO05D005372 6.9e-18 94.4 125 50.4
Peaxi162Scf00134g02026 Petunia axillaris HOM05D004695 ORTHO05D005372 9.0e-18 94.0 114 50.0
Haze_00944 Corylus avellana HOM05D004695 ORTHO05D005372 2.0e-17 92.8 118 49.2
Gorai.011G113700 Gossypium raimondii HOM05D004695 ORTHO05D005372 3.4e-17 92.0 117 52.1
Cfa015601 Carpinus fangiana HOM05D004695 ORTHO05D005372 4.4e-17 91.7 123 49.6
Glyma.17G015900 Glycine max HOM05D004695 ORTHO05D005372 5.8e-17 91.3 89 57.3
arahy.Tifrunner.gnm1.ann1.P7T279 Arachis hypogaea HOM05D004695 ORTHO05D005372 2.2e-16 89.4 124 53.2
Gohir.A10G084407 Gossypium hirsutum HOM05D004695 ORTHO05D005372 2.2e-16 89.4 117 49.6
Gohir.D10G104100 Gossypium hirsutum HOM05D004695 ORTHO05D005372 2.2e-16 89.4 117 50.4
TAR636G3528 Trochodendron aralioides HOM05D004695 ORTHO05D005372 2.2e-16 89.4 110 50.9
Nitab4.5_0000630g0080 Nicotiana tabacum HOM05D004695 ORTHO05D005372 6.4e-16 87.8 112 49.1
SGA_v2.0_scaffold39G15314 Striga asiatica HOM05D004695 ORTHO05D005372 8.4e-16 87.4 91 51.6
Actinidia36986 Actinidia chinensis HOM05D004695 ORTHO05D005372 1.4e-15 86.7 122 46.7
CiPaw.02G093500 Carya illinoinensis HOM05D004695 ORTHO05D005372 1.4e-15 86.7 117 47.9
TWI09G0501 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 1.4e-15 86.7 124 46.8
Solyc01g079830.3 Solanum lycopersicum HOM05D004695 ORTHO05D005372 1.9e-15 86.3 127 42.5
COL.COLO4_26631 Corchorus olitorius HOM05D004695 ORTHO05D005372 2.4e-15 85.9 95 49.5
PGR142G2632 Punica granatum HOM05D004695 ORTHO05D005372 9.3e-15 84.0 99 53.5
Atru.chr4.2536 Acer truncatum HOM05D004695 ORTHO05D005372 2.7e-14 82.4 105 48.6
DCAR_002402 Daucus carota HOM05D004695 ORTHO05D005372 3.5e-14 82.0 102 48.0
Nitab4.5_0015975g0010 Nicotiana tabacum HOM05D004695 ORTHO05D005372 4.6e-14 81.6 116 46.6
CsaV3_3G013590 Cucumis sativus L. HOM05D004695 ORTHO05D005372 6.0e-14 81.3 120 43.3
DCAR_030605 Daucus carota HOM05D004695 ORTHO05D005372 6.0e-14 81.3 108 45.4
Rhsim04G0203400 Rhododendron simsii HOM05D004695 ORTHO05D005372 7.9e-14 80.9 101 48.5
SalBow2G2333 Salvia bowleyana HOM05D004695 ORTHO05D005372 7.9e-14 80.9 90 51.1
Nn1g02189 Nelumbo nucifera HOM05D004695 ORTHO05D005372 1.3e-13 80.1 112 49.1
MBI17_g29941_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 2.3e-13 79.3 109 49.5
MBI19_g16320_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 2.3e-13 79.3 105 46.7
Eucgr.B01119 Eucalyptus grandis HOM05D004695 ORTHO05D005372 3.9e-13 78.6 124 45.2
ClCG05G005340 Citrullus lanatus HOM05D004695 ORTHO05D005372 5.1e-13 78.2 119 42.9
MBI19_g46840_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 5.1e-13 78.2 105 45.7
EL10As3g23294 Beta vulgaris HOM05D004695 ORTHO05D005372 1.5e-12 76.6 109 44.0
PSO170G6030 Papaver somniferum HOM05D004695 ORTHO05D005372 4.3e-12 75.1 115 47.0
MSTRG.10006 Avicennia marina HOM05D004695 ORTHO05D005372 9.6e-12 73.9 96 49.0
Dinv44493 Davidia involucrata HOM05D003236 ORTHO05D003620 9.6e-12 73.9 88 45.5
HanXRQChr10g0311131 Helianthus annuus HOM05D004695 ORTHO05D005372 9.6e-12 73.9 86 51.2
Sed0015868 Sechium edule HOM05D004695 ORTHO05D005372 1.6e-11 73.2 124 40.3
PSO302G0161 Papaver somniferum HOM05D004695 ORTHO05D005372 2.8e-11 72.4 115 47.0
Cpa.g.sc147.16 Carica papaya HOM05D004695 ORTHO05D005372 4.8e-11 71.6 76 50.0
THA.LOC104818805 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 4.8e-11 71.6 126 41.3
HanXRQChr12g0359551 Helianthus annuus HOM05D004695 ORTHO05D005372 1.1e-10 70.5 78 56.4
Dinv38408 Davidia involucrata HOM05D004695 ORTHO05D005372 1.4e-10 70.1 91 46.2
DCAR_027181 Daucus carota HOM05D004695 ORTHO05D005372 3.1e-10 68.9 115 45.2
THA.LOC104822307 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 3.1e-10 68.9 100 47.0
Aa31LG11G10450 Aethionema arabicum HOM05D004695 ORTHO05D005372 4.0e-10 68.6 94 46.8
BcaB08g36595 Brassica carinata HOM05D004695 ORTHO05D005372 5.3e-10 68.2 105 43.8
CARHR193760 Cardamine hirsuta HOM05D004695 ORTHO05D005372 5.3e-10 68.2 119 39.5
AL6G30640 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 6.9e-10 67.8 105 41.9
Thhalv10014937m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 6.9e-10 67.8 99 44.4
A10p20440 Brassica napus HOM05D004695 ORTHO05D005372 9.0e-10 67.4 101 44.6
BraA10t44114Z Brassica rapa HOM05D004695 ORTHO05D005372 9.0e-10 67.4 101 44.6
BcaC04g18589 Brassica carinata HOM05D004695 ORTHO05D005372 1.2e-09 67.0 101 43.6
C09p57070 Brassica napus HOM05D004695 ORTHO05D005372 1.2e-09 67.0 101 43.6
AT5G19190 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 1.5e-09 66.6 105 41.0
Sp6g25190 Schrenkiella parvula HOM05D004695 ORTHO05D005372 1.5e-09 66.6 100 44.0
BcaB01g05138 Brassica carinata HOM05D004695 ORTHO05D005372 2.0e-09 66.2 102 44.1
C03p10990 Brassica napus HOM05D004695 ORTHO05D005372 2.0e-09 66.2 102 44.1
BolC3t13568H Brassica oleracea HOM05D004695 ORTHO05D005372 2.0e-09 66.2 102 44.1
Migut.G00305 Erythranthe guttata HOM05D004695 ORTHO05D005372 2.0e-09 66.2 105 44.8
AL3G16910 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 3.4e-09 65.5 110 42.7
Thhalv10021691m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 3.4e-09 65.5 129 40.3
BNapus_Darmor_BZH_scaffold_38p02720 Brassica napus HOM05D004695 ORTHO05D005372 4.5e-09 65.1 121 41.3
BolC2t06944H Brassica oleracea HOM05D004695 ORTHO05D005372 4.5e-09 65.1 121 41.3
A02p05310 Brassica napus HOM05D004695 ORTHO05D005372 5.8e-09 64.7 100 43.0
Carub.0006s1752 Capsella rubella HOM05D004695 ORTHO05D005372 5.8e-09 64.7 107 42.1
AT3G06070 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 7.6e-09 64.3 89 42.7
BcaC03g13650 Brassica carinata HOM05D004695 ORTHO05D005372 7.6e-09 64.3 119 41.2
BraA02t05489Z Brassica rapa HOM05D004695 ORTHO05D005372 7.6e-09 64.3 101 43.6
CARHR080580 Cardamine hirsuta HOM05D004695 ORTHO05D005372 7.6e-09 64.3 110 42.7
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 7.6e-09 64.3 74 52.7
BcaC05g30060 Brassica carinata HOM05D004695 ORTHO05D005372 9.9e-09 63.9 110 42.7
Carub.0003s0551 Capsella rubella HOM05D004695 ORTHO05D005372 1.3e-08 63.5 113 40.7
SGA_v2.0_scaffold39G15310 Striga asiatica HOM05D004695 ORTHO05D005372 1.3e-08 63.5 97 40.2
A05p41930 Brassica napus HOM05D004695 ORTHO05D005372 2.2e-08 62.8 110 42.7
Migut.N00157 Erythranthe guttata HOM05D004695 ORTHO05D005372 2.9e-08 62.4 96 39.6
C05p61180 Brassica napus HOM05D004695 ORTHO05D005372 3.8e-08 62.0 108 39.8
BcaC01g04322 Brassica carinata HOM05D004695 ORTHO05D005372 4.9e-08 61.6 109 37.6
A03p34500 Brassica napus HOM05D004695 ORTHO05D005372 4.9e-08 61.6 109 40.4
BraA03t12627Z Brassica rapa HOM05D004695 ORTHO05D005372 4.9e-08 61.6 109 40.4
C03p41960 Brassica napus HOM05D004695 ORTHO05D005372 6.4e-08 61.2 109 37.6
BolC3t16478H Brassica oleracea HOM05D004695 ORTHO05D005372 6.4e-08 61.2 109 37.6
BcaB01g04872 Brassica carinata HOM05D004695 ORTHO05D005372 1.1e-07 60.5 99 39.4
BcaB04g19218 Brassica carinata HOM05D004695 ORTHO05D005372 1.1e-07 60.5 104 40.4
BcaB04g19219 Brassica carinata HOM05D004695 ORTHO05D005372 1.1e-07 60.5 104 40.4
Sp3g05020 Schrenkiella parvula HOM05D004695 ORTHO05D005372 1.1e-07 60.5 83 43.4
Oeu042788.1 Olea europaea HOM05D004695 ORTHO05D005372 1.4e-07 60.1 120 38.3
AUR62038192 Chenopodium quinoa HOM05D004695 ORTHO05D005372 2.4e-07 59.3 93 43.0
A03p09410 Brassica napus HOM05D004695 ORTHO05D005372 3.2e-07 58.9 102 41.2
BraA03t10259Z Brassica rapa HOM05D004695 ORTHO05D005372 3.2e-07 58.9 102 41.2
HPP92_003158 Vanilla planifolia HOM05D004695 ORTHO05D005372 4.2e-07 58.5 117 37.6
BcaB04g21321 Brassica carinata HOM05D004695 ORTHO05D005372 5.5e-07 58.2 100 39.0
unitig_748.g8553 Utricularia gibba HOM05D004695 ORTHO05D005372 5.5e-07 58.2 85 44.7
TAR629G0634 Trochodendron aralioides HOM05D000414 ORTHO05D000276 2.7e-06 55.8 111 36.0
BcaB05g23377 Brassica carinata HOM05D004695 ORTHO05D005372 4.6e-06 55.1 98 41.8
BcaC09g47874 Brassica carinata HOM05D004695 ORTHO05D005372 4.6e-06 55.1 106 35.8
BolC1t05639H Brassica oleracea HOM05D004695 ORTHO05D005372 4.6e-06 55.1 106 35.8
Aa31LG5G16560 Aethionema arabicum HOM05D004695 ORTHO05D005372 6.0e-06 54.7 86 38.4
BraA01t04453Z Brassica rapa HOM05D004695 ORTHO05D005372 6.0e-06 54.7 110 33.6
unitig_32.g11733 Utricularia gibba HOM05D004695 ORTHO05D005372 7.9e-06 54.3 113 35.4
HPP92_000387 Vanilla planifolia HOM05D004695 ORTHO05D005372 7.9e-06 54.3 109 38.5


User provided reference genes

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