Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9107 Trifolium pratense HOM05D004606 ORTHO05D005086 1.5e-39 165.6 78 100.0
TPR.G15650 Trifolium pratense HOM05D004606 ORTHO05D005086 3.1e-37 157.9 78 96.2
Ca_12923_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 4.5e-36 154.1 77 89.6
Glyma.17G206700 Glycine max HOM05D004606 ORTHO05D005086 6.1e-33 143.7 77 84.4
Medtr1g011690 Medicago truncatula HOM05D004606 ORTHO05D005086 6.1e-33 143.7 77 85.7
Ca_13137_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 3.0e-32 141.4 77 84.4
Phvul.001G053900 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 6.8e-32 140.2 76 86.8
VMungo0647G1004 Vigna mungo HOM05D004606 ORTHO05D005086 3.4e-31 137.9 77 83.1
Lj5g0014776 Lotus japonicus HOM05D004606 ORTHO05D005086 4.8e-30 134.0 78 80.8
Lalb_Chr22g0361571 Lupinus albus HOM05D004606 ORTHO05D005086 1.1e-29 132.9 77 81.8
Psat6g030120 Pisum sativum HOM05D004606 ORTHO05D005086 1.8e-29 132.1 77 81.8
arahy.Tifrunner.gnm1.ann1.Z34R6V Arachis hypogaea HOM05D004606 ORTHO05D005086 5.4e-29 130.6 73 83.6
CiPaw.07G219400 Carya illinoinensis HOM05D004606 ORTHO05D005086 2.7e-28 128.3 77 74.0
arahy.Tifrunner.gnm1.ann1.K28DE3 Arachis hypogaea HOM05D004606 ORTHO05D005086 3.5e-28 127.9 72 81.9
Cfa013195 Carpinus fangiana HOM05D004606 ORTHO05D005086 7.7e-28 126.7 77 77.9
Haze_21597 Corylus avellana HOM05D004606 ORTHO05D005086 5.0e-27 124.0 73 79.5
Potri.018G032500 Populus trichocarpa HOM05D004606 ORTHO05D005086 1.5e-26 122.5 77 74.0
Medtr1g011700 Medicago truncatula HOM05D004606 ORTHO05D005086 1.9e-26 122.1 76 76.3
TPR.G15652 Trifolium pratense HOM05D004606 ORTHO05D005086 1.9e-26 122.1 60 96.7
FAN15G1610 Fragaria x ananassa HOM05D004606 ORTHO05D005086 4.2e-26 120.9 76 73.7
Prupe.1G471700 Prunus persica HOM05D004606 ORTHO05D005086 4.2e-26 120.9 76 73.7
Duzib187G0213 Durio zibethinus HOM05D004606 ORTHO05D005086 5.5e-26 120.6 76 72.4
RcHm_v2.0_Chr6g0298811 Rosa chinensis HOM05D004606 ORTHO05D005086 7.2e-26 120.2 76 72.4
Ciclev10008268m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.6e-25 119.0 76 72.4
Nitab4.5_0000508g0210 Nicotiana tabacum HOM05D004606 ORTHO05D005086 1.6e-25 119.0 76 71.1
Nitab4.5_0002339g0060 Nicotiana tabacum HOM05D004606 ORTHO05D005086 1.6e-25 119.0 76 72.4
CsaV3_2G031750 Cucumis sativus L. HOM05D004606 ORTHO05D005086 2.1e-25 118.6 76 69.7
FvH4_2g29790 Fragaria vesca HOM05D004606 ORTHO05D005086 2.1e-25 118.6 76 72.4
Sed0001356 Sechium edule HOM05D004606 ORTHO05D005086 2.7e-25 118.2 76 72.4
FAN24G2357 Fragaria x ananassa HOM05D004606 ORTHO05D005086 3.6e-25 117.9 76 71.1
TWI63G0154 Tripterygium wilfordii HOM05D004606 ORTHO05D005086 3.6e-25 117.9 72 73.6
MELO3C011226.2 Cucumis melo HOM05D004606 ORTHO05D005086 6.1e-25 117.1 76 68.4
COL.COLO4_24007 Corchorus olitorius HOM05D004606 ORTHO05D005086 8.0e-25 116.7 76 71.1
TAR626G1705 Trochodendron aralioides HOM05D004606 ORTHO05D005086 8.0e-25 116.7 77 70.1
Oeu045188.1 Olea europaea HOM05D004606 ORTHO05D005086 1.0e-24 116.3 76 68.4
Peaxi162Scf00251g01122 Petunia axillaris HOM05D004606 ORTHO05D005086 1.0e-24 116.3 76 71.1
Oeu045190.1 Olea europaea HOM05D004606 ORTHO05D005086 1.4e-24 115.9 76 68.4
FAN27G1511 Fragaria x ananassa HOM05D004606 ORTHO05D005086 1.8e-24 115.5 76 71.1
QL04p042484 Quercus lobata HOM05D004606 ORTHO05D005086 2.3e-24 115.2 77 70.1
Sabra18G0033400 Salix brachista HOM05D004606 ORTHO05D005086 2.3e-24 115.2 77 68.8
COL.COLO4_24006 Corchorus olitorius HOM05D004606 ORTHO05D005086 4.0e-24 114.4 76 68.4
Lj7C716G6 Lonicera japonica HOM05D004606 ORTHO05D005086 4.0e-24 114.4 76 67.1
PSO017G2258 Papaver somniferum HOM05D004606 ORTHO05D005086 4.0e-24 114.4 76 69.7
PSO170G2975 Papaver somniferum HOM05D004606 ORTHO05D005086 4.0e-24 114.4 76 69.7
Rhsim02G0193100 Rhododendron simsii HOM05D004606 ORTHO05D005086 4.0e-24 114.4 76 68.4
Dinv11601 Davidia involucrata HOM05D004606 ORTHO05D005086 5.2e-24 114.0 76 71.1
MD15G1118300 Malus domestica HOM05D004606 ORTHO05D005086 5.2e-24 114.0 76 69.7
QL04p042370 Quercus lobata HOM05D004606 ORTHO05D005086 5.2e-24 114.0 77 68.8
QL04p042401 Quercus lobata HOM05D004606 ORTHO05D005086 5.2e-24 114.0 77 68.8
TAR626G0087 Trochodendron aralioides HOM05D004606 ORTHO05D005086 1.5e-23 112.5 77 67.5
Cpa.g.sc91.30 Carica papaya HOM05D004606 ORTHO05D005086 2.0e-23 112.1 77 66.2
EL10Ac2g02564 Beta vulgaris HOM05D004606 ORTHO05D005086 2.6e-23 111.7 76 67.1
Ciclev10010533m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.6e-23 111.7 76 64.5
Thecc.09G147400 Theobroma cacao HOM05D004606 ORTHO05D005086 3.4e-23 111.3 73 69.9
CSS0017380 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 4.4e-23 110.9 76 65.8
Atru.chr7.2354 Acer truncatum HOM05D004606 ORTHO05D005086 7.5e-23 110.2 77 67.5
Ciclev10010537m.g Citrus clementina HOM05D004606 ORTHO05D005086 7.5e-23 110.2 76 67.1
Eucgr.L01636 Eucalyptus grandis HOM05D004606 ORTHO05D005086 7.5e-23 110.2 77 64.9
Nn2g11896 Nelumbo nucifera HOM05D004606 ORTHO05D005086 7.5e-23 110.2 76 64.5
AUR62041849 Chenopodium quinoa HOM05D004606 ORTHO05D005086 9.8e-23 109.8 73 67.1
AUR62032354 Chenopodium quinoa HOM05D004606 ORTHO05D005086 1.3e-22 109.4 73 65.8
Eucgr.L02556 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.3e-22 109.4 77 64.9
Gohir.D03G064400 Gossypium hirsutum HOM05D004606 ORTHO05D005086 1.3e-22 109.4 72 69.4
Gorai.013G110500 Gossypium raimondii HOM05D004606 ORTHO05D005086 1.3e-22 109.4 72 69.4
Solyc08g067470.3 Solanum lycopersicum HOM05D004606 ORTHO05D005086 1.3e-22 109.4 76 67.1
vmacro11130 Vaccinium macrocarpon HOM05D004606 ORTHO05D005086 1.3e-22 109.4 76 65.8
Hma1.2p1_0000F.1_g000990 Hydrangea macrophylla HOM05D004606 ORTHO05D005086 2.2e-22 108.6 74 71.6
MBI04_g33818_MAGBIO Magnolia biondii HOM05D004606 ORTHO05D005086 2.2e-22 108.6 76 65.8
Cc11_g01620 Coffea canephora HOM05D004606 ORTHO05D005086 4.9e-22 107.5 76 63.2
Migut.A00299 Erythranthe guttata HOM05D004606 ORTHO05D005086 6.3e-22 107.1 78 65.4
Aqoxy7G01977_Aqoxy7G01978 Aquilegia oxysepala HOM05D004606 ORTHO05D005086 8.3e-22 106.7 77 62.3
Sopen08g021410 Solanum pennellii HOM05D004606 ORTHO05D005086 8.3e-22 106.7 76 67.1
CSS0006183 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 1.1e-21 106.3 76 67.1
Potri.006G248800 Populus trichocarpa HOM05D004606 ORTHO05D005086 1.1e-21 106.3 77 63.6
GSVIVG01035774001 Vitis vinifera HOM05D004606 ORTHO05D005086 1.8e-21 105.5 61 78.7
PGSC0003DMG400025535 Solanum tuberosum HOM05D004606 ORTHO05D005086 2.4e-21 105.1 76 65.8
MD08G1141800 Malus domestica HOM05D004606 ORTHO05D005086 3.1e-21 104.8 76 64.5
Manes.16G118200 Manihot esculenta HOM05D004606 ORTHO05D005086 4.1e-21 104.4 76 60.5
Eucgr.C02825 Eucalyptus grandis HOM05D004606 ORTHO05D005086 5.4e-21 104.0 77 63.6
QL04p042408 Quercus lobata HOM05D004606 ORTHO05D005086 1.2e-20 102.8 76 65.8
ECA233G1913 Erigeron canadensis HOM05D004606 ORTHO05D005086 2.0e-20 102.1 76 59.2
Eucgr.C02823 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.5e-20 100.9 67 68.7
Ciclev10008384m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.7e-19 99.0 77 61.0
Ciclev10008450m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.7e-19 99.0 77 61.0
Ciclev10010634m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.9e-19 98.2 77 61.0
Eucgr.C02820 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.9e-19 98.2 67 67.2
ClCG08G013020 Citrullus lanatus HOM05D004606 ORTHO05D005086 5.0e-19 97.4 77 61.0
Ciclev10010301m.g Citrus clementina HOM05D004606 ORTHO05D005086 6.6e-19 97.1 76 57.9
Migut.A00297 Erythranthe guttata HOM05D004606 ORTHO05D005086 6.6e-19 97.1 76 60.5
Migut.A00292 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.5e-18 95.9 76 59.2
Migut.A00296 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.5e-18 95.9 76 59.2
Eucgr.C02822 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.9e-18 95.5 66 68.2
Eucgr.L01635 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.9e-18 95.5 66 68.2
Migut.A00293 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.2e-17 92.8 76 57.9
Eucgr.C02829 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.2e-17 92.8 67 65.7
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 2.1e-17 92.0 76 55.3
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 2.1e-17 92.0 76 55.3
PGR044G0860 Punica granatum HOM05D004606 ORTHO05D005086 2.1e-17 92.0 76 52.6
Lsat_1_v5_gn_1_40980 Lactuca sativa HOM05D004606 ORTHO05D005086 2.8e-17 91.7 77 58.4
Ciclev10008369m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.6e-17 91.3 77 57.1
SGA_v2.0_scaffold448G51772 Striga asiatica HOM05D004606 ORTHO05D005086 4.7e-17 90.9 78 56.4
Ciclev10008398m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.0e-16 87.8 63 66.7
Ciclev10008396m.g Citrus clementina HOM05D004606 ORTHO05D005086 8.9e-16 86.7 63 65.1
QL04p042372 Quercus lobata HOM05D004606 ORTHO05D005086 8.9e-16 86.7 57 71.9
Gohir.A02G109707 Gossypium hirsutum HOM05D004606 ORTHO05D005086 1.2e-15 86.3 57 71.9
ATR0051G060 Amborella trichopoda HOM05D004606 ORTHO05D005086 2.2e-14 82.0 75 53.3
QL04p042488 Quercus lobata HOM05D004606 ORTHO05D005086 2.2e-14 82.0 57 68.4
Ciclev10010709m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.7e-14 81.3 76 52.6
Oeu031575.3 Olea europaea HOM05D004606 ORTHO05D005086 1.4e-13 79.3 59 62.7
ClCG08G013030 Citrullus lanatus HOM05D004606 ORTHO05D005086 7.0e-13 77.0 75 52.0
THA.LOC104815034 Tarenaya hassleriana HOM05D004606 ORTHO05D005086 7.0e-13 77.0 82 54.9
Eucgr.C02826 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.0e-12 75.5 59 61.0
SEGI_00162 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 2.0e-12 75.5 70 51.4
CARHR201940 Cardamine hirsuta HOM05D004606 ORTHO05D005086 4.6e-12 74.3 77 55.8
SEGI_39416 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 7.8e-12 73.6 70 50.0
Sc09g0008700 Simmondsia chinensis HOM05D004606 ORTHO05D005086 7.8e-12 73.6 76 48.7
Aa31LG3G15860 Aethionema arabicum HOM05D004606 ORTHO05D005086 1.7e-11 72.4 81 49.4
Sp6g32250 Schrenkiella parvula HOM05D004606 ORTHO05D005086 1.7e-11 72.4 77 54.5
Oeu045189.1 Olea europaea HOM05D004606 ORTHO05D005086 2.9e-11 71.6 54 57.4
AT5G11330 Arabidopsis thaliana HOM05D004606 ORTHO05D005086 5.0e-11 70.9 77 53.2
MSTRG.25861 Avicennia marina HOM05D004606 ORTHO05D005086 5.0e-11 70.9 56 60.7
Carub.0006s0979 Capsella rubella HOM05D004606 ORTHO05D005086 8.6e-11 70.1 77 53.2
A10p26400 Brassica napus HOM05D004606 ORTHO05D005086 1.1e-10 69.7 77 53.2
CsaV3_2G031760 Cucumis sativus L. HOM05D004606 ORTHO05D005086 1.5e-10 69.3 75 48.0
BolC9t59377H Brassica oleracea HOM05D004606 ORTHO05D005086 1.9e-10 68.9 77 51.9
Zm00001eb385840 Zea mays HOM05D004606 ORTHO05D005086 2.5e-10 68.6 79 46.8
BraA10t44697Z Brassica rapa HOM05D004606 ORTHO05D005086 3.3e-10 68.2 77 51.9
BcaB08g37070 Brassica carinata HOM05D004606 ORTHO05D005086 4.3e-10 67.8 77 49.4
Thhalv10013697m.g Eutrema salsugineum HOM05D004606 ORTHO05D005086 4.3e-10 67.8 77 50.6
MELO3C011227.2 Cucumis melo HOM05D004606 ORTHO05D005086 5.6e-10 67.4 62 56.5
Os06g0597600 Oryza sativa ssp. japonica HOM05D004606 ORTHO05D005086 7.3e-10 67.0 85 42.4
PGR044G1635 Punica granatum HOM05D004606 ORTHO05D005086 9.5e-10 66.6 78 47.4
AL6G21980 Arabidopsis lyrata HOM05D004606 ORTHO05D005086 2.8e-09 65.1 77 50.6
BcaC04g19239 Brassica carinata HOM05D004606 ORTHO05D005086 3.6e-09 64.7 77 50.6
Mapoly0132s0019 Marchantia polymorpha HOM05D004606 ORTHO05D005086 1.0e-08 63.2 72 44.4
C09p65540 Brassica napus HOM05D004606 ORTHO05D005086 1.8e-08 62.4 77 49.4
Pp3c18_1340 Physcomitrium patens HOM05D004606 ORTHO05D005086 5.2e-08 60.8 76 40.8
Duzib168G1788 Durio zibethinus HOM05D004606 ORTHO05D005086 2.6e-07 58.5 34 76.5


User provided reference genes

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