Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 1.3e-38 162.5 80 100.0
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 3.8e-30 134.4 77 89.6
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 9.4e-29 129.8 77 83.1
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.8e-27 125.6 80 77.5
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 3.0e-27 124.8 77 81.8
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 1.1e-26 122.9 80 78.8
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 1.5e-26 122.5 77 77.9
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 2.0e-26 122.1 78 75.6
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 5.7e-26 120.6 77 80.5
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 1.3e-25 119.4 77 80.5
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 1.7e-25 119.0 70 85.7
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 2.8e-25 118.2 77 76.6
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 2.8e-25 118.2 78 74.4
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 4.8e-25 117.5 67 86.6
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 6.3e-25 117.1 70 84.3
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 8.2e-25 116.7 69 81.2
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 1.4e-24 115.9 77 75.3
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 1.4e-24 115.9 78 73.1
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 2.4e-24 115.2 77 76.6
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 3.1e-24 114.8 77 76.6
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 3.1e-24 114.8 77 76.6
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 4.1e-24 114.4 72 81.9
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 5.3e-24 114.0 81 72.8
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 1.5e-23 112.5 77 72.7
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 1.5e-23 112.5 77 74.0
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 2.0e-23 112.1 65 83.1
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 2.6e-23 111.7 79 72.2
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 4.5e-23 110.9 77 72.7
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 4.5e-23 110.9 77 76.6
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 4.5e-23 110.9 71 76.1
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 5.9e-23 110.5 65 81.5
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 5.9e-23 110.5 77 76.6
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 5.9e-23 110.5 67 79.1
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 5.9e-23 110.5 65 81.5
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 1.0e-22 109.8 80 67.5
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 1.3e-22 109.4 80 67.5
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 2.9e-22 108.2 73 69.9
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 2.9e-22 108.2 73 75.3
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 2.9e-22 108.2 78 67.9
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 3.8e-22 107.8 65 78.5
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 3.8e-22 107.8 67 77.6
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 5.0e-22 107.5 66 75.8
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 6.5e-22 107.1 73 75.3
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 1.4e-21 105.9 76 69.7
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 2.5e-21 105.1 67 76.1
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 5.5e-21 104.0 77 72.7
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 5.5e-21 104.0 70 74.3
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 5.5e-21 104.0 60 83.3
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 5.5e-21 104.0 67 80.6
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 9.4e-21 103.2 74 68.9
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 1.2e-20 102.8 77 68.8
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 1.2e-20 102.8 65 73.8
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 1.2e-20 102.8 68 76.5
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 2.1e-20 102.1 65 73.8
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.1e-20 102.1 67 79.1
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 2.1e-20 102.1 71 69.0
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 3.6e-20 101.3 68 72.1
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 3.6e-20 101.3 68 72.1
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 3.6e-20 101.3 68 72.1
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 4.7e-20 100.9 70 72.9
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 4.7e-20 100.9 71 67.6
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 6.1e-20 100.5 68 72.1
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 1.0e-19 99.8 67 70.1
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 1.0e-19 99.8 71 70.4
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 1.4e-19 99.4 61 75.4
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 1.8e-19 99.0 68 69.1
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 2.3e-19 98.6 68 73.5
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 5.1e-19 97.4 71 70.4
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 6.7e-19 97.1 68 72.1
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 8.8e-19 96.7 85 63.5
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 2.0e-18 95.5 54 81.5
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 4.4e-18 94.4 67 70.1
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 5.7e-18 94.0 74 62.2
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 5.7e-18 94.0 62 71.0
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 5.7e-18 94.0 67 71.6
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 5.7e-18 94.0 69 69.6
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 9.7e-18 93.2 58 74.1
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 1.3e-17 92.8 56 78.6
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 1.3e-17 92.8 56 78.6
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 2.2e-17 92.0 74 63.5
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 2.2e-17 92.0 63 71.4
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 2.2e-17 92.0 67 70.1
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 2.2e-17 92.0 63 68.3
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 2.8e-17 91.7 71 66.2
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 3.7e-17 91.3 54 81.5
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 4.8e-17 90.9 66 65.2
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 6.3e-17 90.5 73 63.0
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 6.3e-17 90.5 66 69.7
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 8.2e-17 90.1 70 64.3
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 2.4e-16 88.6 60 70.0
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 3.1e-16 88.2 80 56.2
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 7.0e-16 87.0 70 62.9
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 9.1e-16 86.7 55 76.4
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 2.0e-15 85.5 57 70.2
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 2.6e-15 85.1 67 64.2
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 2.6e-15 85.1 67 64.2
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 1.0e-14 83.2 67 58.2
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 7.2e-13 77.0 55 63.6
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 1.4e-11 72.8 77 50.6
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 5.2e-11 70.9 75 50.7
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 6.7e-11 70.5 43 79.1
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 9.7e-10 66.6 38 81.6
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 1.7e-06 55.8 46 54.3
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.8e-06 54.7 30 83.3


User provided reference genes

Program Settings