Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 2246.9 1155 100.0
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1929.5 1132 86.6
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1769.6 1133 79.6
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1732.6 1134 78.8
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1729.9 1135 78.5
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1729.1 1139 77.2
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1650.6 1139 74.8
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1650.2 1139 74.8
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1483.8 972 78.5
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1482.2 1130 67.0
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1467.6 876 86.2
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1452.6 1133 65.8
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1451.4 1139 65.0
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1445.3 1127 66.0
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1429.5 1143 64.7
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1427.9 1129 64.7
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1425.6 1129 64.3
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1401.3 1119 64.2
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1401.3 1133 64.1
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1395.9 1133 64.0
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1377.1 1134 63.3
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1371.3 1188 60.4
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1365.1 1129 62.4
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1355.5 1127 62.4
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1353.6 1129 62.5
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1341.6 1129 61.7
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1340.9 1136 60.6
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1339.3 1133 60.7
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1330.1 1129 60.6
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1328.2 1125 60.8
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1326.6 1129 60.4
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1324.7 1139 61.5
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1324.3 1144 60.3
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1323.1 1120 60.8
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1322.4 1133 60.3
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1321.2 1131 60.4
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1319.7 1120 60.5
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1319.7 1127 60.2
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1317.8 1133 61.3
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1317.4 1128 60.2
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1312.7 1129 59.9
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1310.0 1129 59.9
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1309.7 1164 59.4
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1308.1 1165 60.8
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1301.6 1148 59.2
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1299.6 1200 57.2
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1295.8 1132 59.0
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1295.8 1128 59.7
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1295.4 1132 59.3
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1293.9 1128 59.6
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1291.2 1102 61.3
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1290.0 1125 59.6
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1289.2 1125 59.6
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1287.3 1127 59.2
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1285.0 1132 59.3
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1280.0 1129 59.4
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1276.5 1172 58.5
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1273.5 1133 58.3
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1273.5 1128 58.6
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1273.1 1129 58.7
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1264.6 1123 59.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1261.5 1137 57.3
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1255.4 779 81.8
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1251.9 1183 55.6
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1251.9 1133 57.7
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1249.2 1127 58.2
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1246.1 1124 57.9
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1243.8 1120 58.8
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1243.8 1139 58.5
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1242.6 1120 58.8
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1236.9 1134 58.3
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1235.3 1114 58.0
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1232.2 1144 58.4
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1227.6 1120 58.2
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1226.1 1117 57.9
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1221.1 1119 57.6
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1220.7 1119 57.9
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1220.3 1127 57.7
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1220.3 1127 57.7
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1217.6 950 66.3
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1216.8 1119 57.8
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1216.8 1122 57.2
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1216.8 1128 57.3
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1214.5 1113 58.0
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1209.9 1217 53.7
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1208.0 1120 57.4
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1208.0 966 64.3
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1206.4 1117 57.7
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1205.7 1127 56.6
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1199.1 1122 57.0
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1198.0 981 63.7
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1191.4 1131 55.8
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1182.9 1168 53.9
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1175.6 1124 56.0
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1171.0 1122 56.1
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1169.5 1038 60.1
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1168.7 1119 55.6
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1163.7 1129 54.0
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1159.1 1173 53.5
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1157.1 1131 54.6
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1147.9 1037 58.1
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1139.0 1037 57.4
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1105.9 1145 52.7
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 7.1e-311 1070.8 830 65.9
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 7.3e-308 1060.8 967 57.4
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.1e-306 1057.0 1121 52.4
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.2e-304 1049.3 881 60.7
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 3.8e-288 995.3 777 64.7
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 4.2e-287 991.9 1160 48.4
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.3e-268 929.1 1062 49.2
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 3.9e-261 905.6 677 67.2
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.1e-252 877.5 1141 43.6
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 5.2e-245 852.0 1046 46.9
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.8e-243 846.3 1160 42.1
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 3.1e-234 816.2 1112 42.9
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 2.4e-226 790.0 799 51.8
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.7e-185 653.7 944 40.9
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.1e-178 629.0 520 65.2
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 1.0e-168 598.6 1110 36.6
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.5e-148 531.6 1131 34.4
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.4e-146 525.0 435 63.9
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 3.2e-146 523.9 479 57.0
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 4.1e-117 427.2 331 62.5
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 3.3e-98 364.4 354 54.8
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.4e-93 349.0 219 81.3
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 3.1e-88 331.3 1372 25.7
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.5e-79 302.4 508 38.0
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.2e-65 253.8 259 54.8
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.4e-64 251.9 357 42.6
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.0e-64 250.0 266 52.3
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.1e-56 226.5 212 56.6
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.5e-55 222.6 391 37.6
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.7e-54 219.2 226 53.5
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.9e-53 215.7 212 53.3
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.5e-45 188.7 241 50.2
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-42 179.5 175 54.9
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-42 179.5 175 54.9
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-42 179.5 175 54.9
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 1.5e-42 179.5 383 32.6
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.7e-42 177.6 175 54.3
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-41 176.4 175 54.3
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 6.2e-41 174.1 192 49.0
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.4e-39 168.3 239 42.7
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.3e-35 155.6 81 93.8
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.6e-33 149.4 175 48.6
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 6.9e-32 144.1 128 59.4
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 7.9e-28 130.6 221 37.1
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 1.8e-27 129.4 221 37.1
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 9.7e-26 123.6 221 35.7
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 8.2e-25 120.6 73 78.1
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.1e-24 120.2 430 27.0
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 4.7e-20 104.8 77 61.0
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 7.9e-20 104.0 103 54.4
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 5.7e-18 97.8 313 27.8
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 3.1e-16 92.0 55 78.2
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.2e-15 90.1 111 44.1
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.5e-15 89.7 58 67.2


User provided reference genes

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