Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 4.1e-163 578.2 330 100.0
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 6.4e-140 501.1 329 85.4
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 6.8e-134 481.1 328 85.4
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 1.6e-119 433.3 326 70.2
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 2.8e-119 432.6 323 69.0
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 3.4e-117 425.6 332 71.7
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 5.8e-117 424.9 329 71.1
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 7.1e-115 417.9 331 72.8
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 8.7e-113 411.0 333 71.5
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 1.4e-110 403.7 333 73.0
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 1.5e-109 400.2 331 71.0
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 7.1e-107 391.3 318 63.2
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.6e-106 390.2 318 64.8
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 7.9e-106 387.9 323 70.3
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 3.0e-105 386.0 323 69.0
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 1.4e-102 377.1 326 66.6
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 5.3e-102 375.2 214 84.6
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 9.0e-102 374.4 326 66.3
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 4.3e-96 355.5 323 65.3
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 2.1e-95 353.2 335 62.7
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.5e-93 347.1 257 66.9
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 5.1e-89 332.0 242 71.1
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 8.7e-89 331.3 323 54.2
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 4.8e-87 325.5 330 53.6
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 3.1e-86 322.8 240 68.8
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 1.0e-84 317.8 232 69.4
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.6e-82 310.5 324 51.5
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 7.9e-82 308.1 324 59.0
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 9.7e-80 301.2 326 50.3
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 1.3e-79 300.8 319 53.0
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 6.3e-79 298.5 321 48.6
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 8.2e-79 298.1 324 54.0
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 1.1e-78 297.7 329 52.9
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 1.4e-78 297.4 320 56.9
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 2.4e-78 296.6 315 50.8
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.5e-77 293.9 321 50.2
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 2.0e-77 293.5 319 50.5
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 1.0e-76 291.2 312 50.6
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 1.0e-76 291.2 325 51.1
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 3.8e-76 289.3 328 48.8
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 6.5e-76 288.5 313 49.5
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 6.5e-76 288.5 328 48.8
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 3.2e-75 286.2 313 49.5
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 3.2e-75 286.2 321 50.5
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 7.2e-75 285.0 329 51.7
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 9.4e-75 284.6 325 48.9
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.6e-74 283.9 311 50.8
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 1.6e-74 283.9 329 47.4
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 2.7e-74 283.1 321 48.6
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 2.7e-74 283.1 331 47.4
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 3.6e-74 282.7 321 59.2
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 3.6e-74 282.7 329 51.7
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 3.6e-74 282.7 234 58.1
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 4.7e-74 282.3 321 48.3
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 6.1e-74 282.0 319 48.9
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 1.0e-73 281.2 327 48.9
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 1.8e-73 280.4 329 46.8
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 1.8e-73 280.4 319 50.8
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.8e-73 280.4 322 47.8
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 2.3e-73 280.0 324 47.8
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 5.1e-73 278.9 254 55.9
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 8.8e-73 278.1 316 48.1
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 8.8e-73 278.1 323 46.4
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 1.1e-72 277.7 333 46.5
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 1.5e-72 277.3 328 45.4
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.5e-72 277.3 316 48.7
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 2.0e-72 276.9 328 46.3
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 5.7e-72 275.4 321 47.0
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 5.7e-72 275.4 326 47.2
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 1.3e-71 274.2 323 49.8
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 2.8e-71 273.1 229 58.1
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.7e-71 272.7 329 55.9
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 4.8e-71 272.3 323 44.9
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 4.8e-71 272.3 329 49.2
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 4.8e-71 272.3 322 47.2
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 4.8e-71 272.3 324 51.5
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 8.2e-71 271.6 325 46.8
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 1.1e-70 271.2 316 48.7
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.1e-70 271.2 322 48.8
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.4e-70 270.8 322 50.6
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 1.8e-70 270.4 323 45.5
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 2.4e-70 270.0 323 46.1
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 3.1e-70 269.6 323 45.5
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 5.3e-70 268.9 323 45.5
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 7.0e-70 268.5 246 54.5
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 9.1e-70 268.1 324 44.1
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 9.1e-70 268.1 323 51.7
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 9.1e-70 268.1 323 51.7
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 9.1e-70 268.1 324 44.8
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 1.2e-69 267.7 319 50.2
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 1.2e-69 267.7 323 44.3
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 1.2e-69 267.7 320 43.4
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 2.0e-69 266.9 323 45.2
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 2.6e-69 266.5 324 51.5
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 2.6e-69 266.5 324 51.5
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 3.5e-69 266.2 323 46.1
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 3.5e-69 266.2 331 48.9
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 5.9e-69 265.4 323 47.1
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 1.7e-68 263.8 323 44.3
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.7e-68 263.8 377 43.0
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 2.9e-68 263.1 334 43.1
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 5.0e-68 262.3 323 46.4
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 5.0e-68 262.3 256 53.9
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 8.5e-68 261.5 336 44.6
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 1.1e-67 261.2 320 44.4
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 4.2e-67 259.2 334 41.9
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 5.5e-67 258.8 326 44.5
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 6.1e-66 255.4 326 42.9
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 1.8e-65 253.8 325 43.1
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 2.3e-65 253.4 353 50.7
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 6.7e-65 251.9 329 43.8
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 1.1e-64 251.1 230 76.5
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 3.3e-64 249.6 325 45.5
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 3.3e-64 249.6 323 43.3
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 1.8e-62 243.8 233 54.5
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 2.6e-61 240.0 320 41.9
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 4.5e-61 239.2 325 48.0
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 5.9e-61 238.8 276 47.8
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 7.7e-61 238.4 328 50.3
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 1.7e-60 237.3 317 42.6
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 3.0e-57 226.5 268 47.0
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 2.4e-54 216.9 184 58.7
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 4.2e-51 206.1 319 37.6
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 6.1e-50 202.2 326 42.3
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 1.3e-47 194.5 218 48.2
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 2.7e-45 186.8 189 49.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 5.9e-45 185.7 322 37.3
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 8.9e-41 171.8 235 38.7
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 4.4e-40 169.5 324 37.0
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 4.4e-40 169.5 229 38.4
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 6.3e-39 165.6 335 37.0
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 9.2e-38 161.8 225 44.0
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 5.9e-37 159.1 323 30.7
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 7.8e-37 158.7 247 40.1
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 1.0e-36 158.3 235 42.6
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 5.0e-36 156.0 240 39.6
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 1.5e-35 154.5 144 54.2
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 3.3e-35 153.3 222 37.8
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 1.8e-33 147.5 281 37.0
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 8.6e-28 128.6 114 59.6
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 2.5e-27 127.1 205 39.5
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 4.0e-25 119.8 115 50.4
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.7e-20 104.4 248 35.1
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-17 93.2 188 31.4
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 7.6e-16 89.0 161 36.0
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.7e-15 87.8 78 55.1
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 7.1e-14 82.4 76 57.9
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 7.3e-11 72.4 170 32.4
SMO230G0066 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 2.8e-10 70.5 221 27.6
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 5.2e-09 66.2 203 29.1
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 8.4e-07 58.9 128 32.8


User provided reference genes

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