Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 0.0e+00 1421.4 758 100.0
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 0.0e+00 1217.6 647 95.1
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 0.0e+00 1215.7 647 95.1
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 0.0e+00 1196.0 630 95.7
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 0.0e+00 1175.6 647 91.5
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 0.0e+00 1174.8 647 91.2
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1152.9 647 90.3
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1130.5 648 87.8
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1128.2 647 87.9
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 0.0e+00 1127.1 647 88.3
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1086.2 647 84.5
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1079.7 647 83.8
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 6.2e-311 1070.5 647 83.5
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 1.5e-306 1055.8 650 81.8
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 3.4e-306 1054.7 647 81.8
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 4.5e-306 1054.3 650 81.8
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 1.9e-304 1048.9 647 81.5
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 2.5e-304 1048.5 647 82.7
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 3.2e-304 1048.1 647 81.1
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.2e-303 1046.2 648 82.3
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 3.6e-303 1044.6 649 82.0
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 1.4e-302 1042.7 648 81.8
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 1.4e-302 1042.7 654 80.4
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 1.5e-301 1039.3 683 78.8
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 2.0e-301 1038.9 696 77.6
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 9.7e-301 1036.6 648 81.2
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 8.2e-300 1033.5 651 80.2
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 5.3e-299 1030.8 647 79.8
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 1.0e-297 1026.5 648 81.0
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 1.9e-296 1022.3 649 78.3
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 2.7e-295 1018.5 647 78.7
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 2.7e-295 1018.5 648 80.9
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 6.1e-295 1017.3 647 79.4
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 1.0e-294 1016.5 648 78.9
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 1.4e-294 1016.1 647 80.1
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 5.7e-293 1010.7 649 79.7
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 9.7e-293 1010.0 647 78.7
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 1.7e-292 1009.2 649 78.6
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 2.2e-292 1008.8 648 80.1
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 4.8e-292 1007.7 647 77.9
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 8.2e-292 1006.9 647 79.6
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 2.4e-291 1005.4 649 78.4
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 3.1e-291 1005.0 649 78.1
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 4.1e-291 1004.6 649 78.1
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 2.0e-290 1002.3 647 77.9
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 2.6e-290 1001.9 649 78.3
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 1.0e-289 1000.0 647 78.5
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 1.1e-288 996.5 647 79.1
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 1.5e-288 996.1 647 77.6
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 5.5e-288 994.2 649 77.3
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 9.4e-288 993.4 647 78.2
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 2.7e-287 991.9 647 78.1
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 6.1e-287 990.7 692 74.4
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 2.3e-286 988.8 650 77.8
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 3.9e-286 988.0 676 74.0
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 7.4e-285 983.8 647 77.4
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 8.2e-284 980.3 648 77.8
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 1.5e-280 969.5 663 74.8
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 2.3e-278 962.2 652 74.8
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 5.2e-278 961.1 652 75.3
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 2.0e-277 959.1 649 76.0
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 4.4e-277 958.0 753 66.8
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 7.5e-277 957.2 650 76.3
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 3.7e-276 954.9 647 75.6
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 9.1e-275 950.3 648 74.8
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 1.2e-274 949.9 648 74.7
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 4.5e-274 948.0 647 74.8
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 4.5e-274 948.0 649 75.0
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 5.9e-274 947.6 647 75.0
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 8.5e-273 943.7 651 73.9
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 1.4e-270 936.4 649 74.4
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 2.3e-270 935.6 648 74.5
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 3.0e-270 935.3 648 73.8
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 8.8e-270 933.7 646 74.5
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 1.5e-269 932.9 650 73.7
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 7.5e-269 930.6 648 73.6
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 9.8e-269 930.2 648 73.6
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 2.8e-268 928.7 648 73.5
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 2.8e-268 928.7 648 73.5
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 2.8e-268 928.7 648 73.6
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 2.0e-266 922.5 649 72.4
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 2.5e-264 915.6 648 72.5
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 1.7e-260 902.9 647 71.4
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 1.8e-254 882.9 658 68.4
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 2.3e-249 865.9 1152 46.5
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 2.5e-248 862.4 647 68.8
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 3.3e-248 862.1 646 68.6
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 2.3e-246 855.9 507 84.8
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 1.6e-234 816.6 521 78.1
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 6.8e-230 801.2 677 61.6
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 1.1e-224 783.9 511 77.3
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 1.6e-223 780.0 676 59.0
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.2e-219 765.4 537 73.6
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.1e-214 750.7 518 73.2
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 3.1e-214 749.2 495 77.4
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 1.2e-210 737.3 641 59.6
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 8.2e-199 698.0 427 81.3
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 1.1e-187 661.0 651 56.1
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 3.6e-170 602.8 371 80.6
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 1.4e-126 458.0 664 40.4
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 3.5e-125 453.4 666 40.5
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 2.6e-120 437.2 274 81.8
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 4.9e-119 433.0 660 39.1
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 6.9e-113 412.5 648 43.4
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 1.1e-110 405.2 474 47.5
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.6e-109 401.4 648 43.1
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 4.6e-109 399.8 232 84.9
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 6.4e-103 379.4 222 87.8
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 6.9e-97 359.4 615 41.5
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.7e-95 354.8 427 52.2
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.6e-90 338.2 247 69.6
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.0e-79 302.4 222 70.7
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 4.8e-74 283.5 636 34.0
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 9.7e-67 259.2 167 75.4
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 2.4e-57 228.0 251 54.6
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 4.8e-50 203.8 156 71.2
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 1.0e-44 186.0 101 89.1
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 5.4e-33 147.1 94 81.9
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 5.4e-33 147.1 94 81.9
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.2e-32 146.0 115 60.9
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 5.2e-28 130.6 76 90.8
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 2.0e-24 118.6 84 65.5
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 3.5e-24 117.9 75 85.3
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 2.3e-23 115.2 215 40.9
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 3.0e-15 88.2 151 38.4
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 3.9e-15 87.8 44 100.0


User provided reference genes

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