Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.6e-188 662.5 327 100.0
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 5.1e-166 587.8 327 88.7
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.5e-165 586.3 327 88.1
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.5e-162 576.2 327 88.1
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 3.7e-156 555.1 329 83.9
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 1.8e-155 552.7 327 84.4
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 2.9e-153 545.4 328 83.8
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 4.2e-152 541.6 329 81.8
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.2e-152 541.6 329 81.8
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.2e-151 540.0 329 80.9
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 4.4e-141 505.0 327 78.6
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 9.1e-139 497.3 327 77.1
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 2.0e-133 479.6 329 73.6
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.3e-132 476.9 328 73.5
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.3e-132 476.9 329 72.9
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 7.7e-130 467.6 335 71.3
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.0e-129 467.2 327 71.9
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.3e-129 466.8 327 71.9
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 5.0e-129 464.9 329 71.7
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 7.2e-128 461.1 338 70.4
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 6.1e-127 458.0 339 71.1
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.4e-126 456.8 324 70.1
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.0e-126 455.7 342 68.7
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 4.0e-126 455.3 349 67.9
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.2e-126 454.9 327 69.4
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 2.6e-125 452.6 329 68.1
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 9.8e-125 450.7 336 69.3
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.7e-124 449.9 344 69.2
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 4.9e-124 448.4 330 68.8
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 6.3e-124 448.0 328 69.2
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 8.3e-124 447.6 336 68.8
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 4.5e-122 441.8 335 67.2
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 5.9e-122 441.4 386 61.4
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.3e-121 440.3 337 68.0
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 1.7e-121 439.9 331 67.7
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 2.3e-121 439.5 328 69.5
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 2.9e-121 439.1 327 67.6
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.0e-121 438.3 338 68.0
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 6.6e-121 438.0 331 67.1
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 6.6e-121 438.0 330 67.9
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 6.6e-121 438.0 344 66.9
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 8.6e-121 437.6 328 69.5
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.1e-120 437.2 331 68.3
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 2.5e-120 436.0 331 67.4
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 4.3e-120 435.3 327 64.8
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 5.6e-120 434.9 385 61.0
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.6e-119 433.3 273 76.9
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 4.0e-118 428.7 327 65.7
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.2e-118 428.3 327 66.7
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 6.8e-118 427.9 390 60.3
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.2e-117 427.2 341 63.3
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.5e-117 426.8 356 62.6
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 7.5e-117 424.5 384 59.9
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 6.4e-116 421.4 328 67.4
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 8.3e-116 421.0 375 60.5
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.1e-115 420.6 334 63.2
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.9e-115 419.9 333 66.4
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.6e-114 416.8 327 64.2
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.5e-114 415.6 336 64.6
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 7.8e-114 414.5 347 62.8
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.3e-113 413.7 383 58.7
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 1.7e-113 413.3 335 63.9
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 8.6e-113 411.0 334 64.1
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.1e-112 410.6 367 58.9
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.9e-112 409.8 329 64.4
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.9e-112 409.8 331 64.4
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.4e-110 403.7 257 74.7
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 4.0e-110 402.1 382 59.2
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 6.8e-110 401.4 303 67.7
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.9e-110 401.0 388 55.9
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.5e-109 400.2 353 59.5
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 3.4e-109 399.1 257 73.5
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.9e-108 396.0 309 65.0
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 3.7e-108 395.6 344 62.2
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 5.4e-107 391.7 333 61.9
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.6e-106 390.2 339 59.6
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.3e-105 386.3 389 54.5
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 6.6e-105 384.8 214 84.6
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 8.6e-105 384.4 391 54.5
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.1e-104 384.0 207 86.5
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 4.3e-104 382.1 343 58.0
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.1e-103 379.8 351 60.4
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 6.2e-103 378.3 283 67.8
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.5e-101 373.6 329 59.6
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 3.5e-98 362.5 326 58.6
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 4.6e-98 362.1 329 58.1
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.7e-97 360.1 329 58.4
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 5.1e-97 358.6 293 63.8
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 8.6e-97 357.8 341 55.1
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.9e-96 356.7 299 61.2
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 9.6e-96 354.4 483 44.9
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.2e-95 354.0 356 54.8
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 3.6e-95 352.4 377 52.8
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 6.2e-95 351.7 426 47.9
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 8.1e-95 351.3 330 57.6
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 2.4e-94 349.7 325 57.5
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 8.9e-94 347.8 327 57.5
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 4.4e-93 345.5 321 58.6
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 9.9e-93 344.4 366 53.6
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.1e-91 340.9 339 54.3
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.0e-89 334.3 327 53.5
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 1.8e-86 323.6 327 52.6
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 1.8e-86 323.6 327 52.6
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 1.2e-85 320.9 327 52.3
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.5e-85 320.5 386 47.2
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.2e-82 310.8 327 51.1
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 3.5e-82 309.3 339 48.4
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.0e-81 307.8 247 67.2
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.1e-80 304.3 331 50.8
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.5e-80 303.9 327 50.5
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 1.5e-80 303.9 333 49.2
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 2.5e-80 303.1 327 50.5
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 4.3e-80 302.4 327 49.8
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.8e-79 298.9 257 60.3
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 1.4e-78 297.4 332 50.3
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 4.3e-72 275.8 174 75.9
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 6.9e-70 268.5 309 46.0
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 3.2e-67 259.6 171 69.6
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 2.1e-66 256.9 249 55.0
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.5e-66 256.1 167 70.1
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.0e-61 240.4 305 44.9
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 6.1e-58 228.8 308 41.6
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.7e-55 219.5 153 69.9
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.4e-54 216.9 150 70.7
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.4e-48 195.3 192 57.8
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.1e-42 177.2 119 73.1
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 6.7e-41 172.2 113 71.7
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.6e-34 149.8 100 72.0
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 1.5e-32 144.4 322 33.9
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 7.7e-29 132.1 122 61.5
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 7.7e-29 132.1 100 63.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.7e-28 131.0 80 75.0
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.7e-23 113.2 132 54.5
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.1e-18 97.4 52 76.9
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.9e-15 86.3 102 50.0
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-14 84.7 55 80.0
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-14 84.7 48 81.2
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 7.0e-14 82.4 53 67.9
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.9e-12 77.0 44 79.5
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 2.2e-07 60.8 446 20.2


User provided reference genes

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