Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1EFM0N Arachis hypogaea HOM05D001318 ORTHO05D001152 3.3e-17 90.5 42 100.0
arahy.Tifrunner.gnm1.ann1.Z287JL Arachis hypogaea HOM05D001318 ORTHO05D001152 3.3e-17 90.5 42 100.0
Glyma.07G056500 Glycine max HOM05D001318 ORTHO05D001152 3.3e-17 90.5 42 100.0
Glyma.16G025500 Glycine max HOM05D001318 ORTHO05D001152 3.3e-17 90.5 42 100.0
Lj3g0015948 Lotus japonicus HOM05D001318 ORTHO05D001152 3.3e-17 90.5 42 100.0
Medtr8g027760 Medicago truncatula HOM05D001318 ORTHO05D001152 3.3e-17 90.5 42 100.0
Phvul.010G113000 Phaseolus vulgaris HOM05D001318 ORTHO05D001152 3.3e-17 90.5 42 100.0
Psat4g160600 Pisum sativum HOM05D001318 ORTHO05D001152 3.3e-17 90.5 42 100.0
TPR.G15350 Trifolium pratense HOM05D001318 ORTHO05D001152 3.3e-17 90.5 42 100.0
TPR.G8978 Trifolium pratense HOM05D001318 ORTHO05D001152 3.3e-17 90.5 42 100.0
VMungo0331G0636 Vigna mungo HOM05D001318 ORTHO05D001152 3.3e-17 90.5 42 100.0
Ca_23541_v3 Cicer arietinum L. HOM05D001318 ORTHO05D001152 9.6e-17 89.0 42 97.6
Lalb_Chr17g0342521 Lupinus albus HOM05D001318 ORTHO05D001152 6.2e-16 86.3 42 95.2
Potri.002G169900 Populus trichocarpa HOM05D001318 ORTHO05D001152 8.1e-16 85.9 41 97.6
CiPaw.01G074900 Carya illinoinensis HOM05D001318 ORTHO05D001152 1.8e-15 84.7 40 97.5
Ciclev10020704m.g Citrus clementina HOM05D001318 ORTHO05D001152 1.8e-15 84.7 40 97.5
Haze_15644 Corylus avellana HOM05D001318 ORTHO05D001152 1.8e-15 84.7 40 97.5
MD07G1148300 Malus domestica HOM05D001318 ORTHO05D001152 1.8e-15 84.7 40 97.5
Prupe.2G186600 Prunus persica HOM05D001318 ORTHO05D001152 1.8e-15 84.7 40 97.5
RcHm_v2.0_Chr1g0359301 Rosa chinensis HOM05D001318 ORTHO05D001152 1.8e-15 84.7 40 97.5
Sed0019577 Sechium edule HOM05D001318 ORTHO05D001152 1.8e-15 84.7 40 97.5
Lalb_Chr10g0100471 Lupinus albus HOM05D001318 ORTHO05D001152 3.1e-15 84.0 42 92.9
ClCG06G002210 Citrullus lanatus HOM05D001318 ORTHO05D001152 4.0e-15 83.6 40 95.0
COL.COLO4_06296 Corchorus olitorius HOM05D001318 ORTHO05D001152 4.0e-15 83.6 40 95.0
CsaV3_6G008290 Cucumis sativus L. HOM05D001318 ORTHO05D001152 4.0e-15 83.6 40 95.0
Glyma.19G255200 Glycine max HOM05D001318 ORTHO05D001152 4.0e-15 83.6 42 92.9
Eucgr.D02368 Eucalyptus grandis HOM05D001318 ORTHO05D001152 5.3e-15 83.2 40 95.0
Manes.05G023900 Manihot esculenta HOM05D001318 ORTHO05D001152 5.3e-15 83.2 41 92.7
THA.LOC104817346 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 5.3e-15 83.2 40 95.0
CANSAT56G2581 Cannabis sativa HOM05D001318 ORTHO05D001152 6.9e-15 82.8 40 95.0
PGR031G2986 Punica granatum HOM05D001318 ORTHO05D001152 6.9e-15 82.8 40 95.0
Atru.chr5.656 Acer truncatum HOM05D001318 ORTHO05D001152 9.0e-15 82.4 40 95.0
Aa31LG1G27760 Aethionema arabicum HOM05D001318 ORTHO05D001152 9.0e-15 82.4 40 95.0
Gohir.A12G111800 Gossypium hirsutum HOM05D001318 ORTHO05D001152 9.0e-15 82.4 40 92.5
Gohir.D12G115100 Gossypium hirsutum HOM05D001318 ORTHO05D001152 9.0e-15 82.4 40 92.5
Gorai.008G124700 Gossypium raimondii HOM05D001318 ORTHO05D001152 9.0e-15 82.4 40 92.5
Lalb_Chr17g0342621 Lupinus albus HOM05D001318 ORTHO05D001152 9.0e-15 82.4 42 92.9
Manes.01G247000 Manihot esculenta HOM05D001318 ORTHO05D001152 9.0e-15 82.4 41 95.1
Potri.014G097800 Populus trichocarpa HOM05D001318 ORTHO05D001152 1.2e-14 82.0 41 92.7
Gohir.A11G096700 Gossypium hirsutum HOM05D001318 ORTHO05D001152 1.5e-14 81.6 40 92.5
Gohir.D11G101400 Gossypium hirsutum HOM05D001318 ORTHO05D001152 1.5e-14 81.6 40 92.5
Gorai.007G108000 Gossypium raimondii HOM05D001318 ORTHO05D001152 1.5e-14 81.6 40 92.5
Lj1g0023709 Lotus japonicus HOM05D001318 ORTHO05D001152 1.5e-14 81.6 42 90.5
AT3G61700 Arabidopsis thaliana HOM05D001318 ORTHO05D001152 2.6e-14 80.9 40 92.5
Carub.0005s2845 Capsella rubella HOM05D001318 ORTHO05D001152 2.6e-14 80.9 40 92.5
Thhalv10006433m.g Eutrema salsugineum HOM05D001318 ORTHO05D001152 2.6e-14 80.9 40 92.5
Gohir.D08G146600 Gossypium hirsutum HOM05D001318 ORTHO05D001152 2.6e-14 80.9 40 92.5
HanXRQChr05g0159941 Helianthus annuus HOM05D001318 ORTHO05D001152 2.6e-14 80.9 41 92.7
Lalb_Chr04g0254451 Lupinus albus HOM05D001318 ORTHO05D001152 2.6e-14 80.9 42 90.5
Sp5g01690 Schrenkiella parvula HOM05D001318 ORTHO05D001152 2.6e-14 80.9 40 92.5
CiPaw.02G040000 Carya illinoinensis HOM05D001318 ORTHO05D001152 3.4e-14 80.5 40 92.5
Duzib133G0755 Durio zibethinus HOM05D001318 ORTHO05D001152 3.4e-14 80.5 40 92.5
Gohir.A08G034100 Gossypium hirsutum HOM05D001318 ORTHO05D001152 3.4e-14 80.5 40 92.5
Gohir.D08G044600 Gossypium hirsutum HOM05D001318 ORTHO05D001152 3.4e-14 80.5 40 92.5
Gorai.004G043600 Gossypium raimondii HOM05D001318 ORTHO05D001152 3.4e-14 80.5 40 92.5
Sabra14G0071600 Salix brachista HOM05D001318 ORTHO05D001152 3.4e-14 80.5 41 90.2
Thecc.01G343900 Theobroma cacao HOM05D001318 ORTHO05D001152 3.4e-14 80.5 40 92.5
arahy.Tifrunner.gnm1.ann1.BNGT2Q Arachis hypogaea HOM05D001318 ORTHO05D001152 4.5e-14 80.1 42 88.1
arahy.Tifrunner.gnm1.ann1.QCV352 Arachis hypogaea HOM05D001318 ORTHO05D001152 4.5e-14 80.1 42 88.1
Nitab4.5_0000141g0200 Nicotiana tabacum HOM05D001318 ORTHO05D001152 5.8e-14 79.7 40 90.0
Nitab4.5_0003566g0040 Nicotiana tabacum HOM05D001318 ORTHO05D001152 5.8e-14 79.7 40 90.0
Actinidia28503 Actinidia chinensis HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 92.5
CSS0025773 Camellia sinensis var. sinensis HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 92.5
CSS0039754 Camellia sinensis var. sinensis HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 92.5
ClCG05G000890 Citrullus lanatus HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 90.0
Dinv18740 Davidia involucrata HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 92.5
Dinv32575 Davidia involucrata HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 92.5
Gorai.004G152200 Gossypium raimondii HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 90.0
Lsat_1_v5_gn_5_1601 Lactuca sativa HOM05D001318 ORTHO05D001152 7.6e-14 79.3 41 90.2
Oeu007902.1 Olea europaea HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 92.5
Oeu043211.2 Olea europaea HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 92.5
Rhsim01G0172000 Rhododendron simsii HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 92.5
Sopen01g006170 Solanum pennellii HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 90.0
PGSC0003DMG400009613 Solanum tuberosum HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 90.0
SGA_v2.0_scaffold5G03012 Striga asiatica HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 92.5
THA.LOC104802063 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 90.0
TAR375G0770 Trochodendron aralioides HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 92.5
vmacro12680 Vaccinium macrocarpon HOM05D001318 ORTHO05D001152 7.6e-14 79.3 40 92.5
AL4G45720 Arabidopsis lyrata HOM05D001318 ORTHO05D001152 9.9e-14 79.0 40 90.0
AT2G46420 Arabidopsis thaliana HOM05D001318 ORTHO05D001152 9.9e-14 79.0 40 90.0
BcaC02g12531 Brassica carinata HOM05D001318 ORTHO05D001152 9.9e-14 79.0 40 90.0
BcaNung05605 Brassica carinata HOM05D001318 ORTHO05D001152 9.9e-14 79.0 40 90.0
A05p01350 Brassica napus HOM05D001318 ORTHO05D001152 9.9e-14 79.0 40 90.0
C04p01530 Brassica napus HOM05D001318 ORTHO05D001152 9.9e-14 79.0 40 90.0
BolC4t21804H Brassica oleracea HOM05D001318 ORTHO05D001152 9.9e-14 79.0 40 90.0
BraA05t19133Z Brassica rapa HOM05D001318 ORTHO05D001152 9.9e-14 79.0 40 90.0
CARHR141700 Cardamine hirsuta HOM05D001318 ORTHO05D001152 9.9e-14 79.0 40 90.0
TWI23G0869 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 9.9e-14 79.0 40 92.5
CARHR172010 Cardamine hirsuta HOM05D001318 ORTHO05D001152 1.3e-13 78.6 39 92.3
MELO3C022309.2 Cucumis melo HOM05D001318 ORTHO05D001152 1.3e-13 78.6 40 90.0
FvH4_7g16290 Fragaria vesca HOM05D001318 ORTHO05D001152 1.3e-13 78.6 40 92.5
FAN03G1438 Fragaria x ananassa HOM05D001318 ORTHO05D001152 1.3e-13 78.6 40 92.5
FAN06G1952 Fragaria x ananassa HOM05D001318 ORTHO05D001152 1.3e-13 78.6 40 92.5
FAN06G3084 Fragaria x ananassa HOM05D001318 ORTHO05D001152 1.3e-13 78.6 40 92.5
FAN10G1039 Fragaria x ananassa HOM05D001318 ORTHO05D001152 1.3e-13 78.6 40 92.5
FAN10G2334 Fragaria x ananassa HOM05D001318 ORTHO05D001152 1.3e-13 78.6 40 92.5
Peaxi162Scf00026g03111 Petunia axillaris HOM05D001318 ORTHO05D001152 1.3e-13 78.6 40 90.0
PGR031G2052 Punica granatum HOM05D001318 ORTHO05D001152 1.3e-13 78.6 40 90.0
Sp4g28440 Schrenkiella parvula HOM05D001318 ORTHO05D001152 1.3e-13 78.6 40 90.0
CAN.G38.30 Capsicum annuum HOM05D001318 ORTHO05D001152 1.7e-13 78.2 42 83.3
PSO135G0166 Papaver somniferum HOM05D001318 ORTHO05D001152 1.7e-13 78.2 40 90.0
Sed0018551 Sechium edule HOM05D001318 ORTHO05D001152 1.7e-13 78.2 40 87.5
BcaC07g42606 Brassica carinata HOM05D001318 ORTHO05D001152 2.2e-13 77.8 40 87.5
A09p53790 Brassica napus HOM05D001318 ORTHO05D001152 2.2e-13 77.8 40 87.5
Sed0000240 Sechium edule HOM05D001318 ORTHO05D001152 2.2e-13 77.8 40 87.5
Hund16705 Selenicereus undatus HOM05D001318 ORTHO05D001152 2.2e-13 77.8 40 90.0
MSTRG.17335 Avicennia marina HOM05D001318 ORTHO05D001152 2.9e-13 77.4 39 92.3
EL10Ac1g00287 Beta vulgaris HOM05D001318 ORTHO05D001152 2.9e-13 77.4 40 90.0
Carub.0004s2912 Capsella rubella HOM05D001318 ORTHO05D001152 2.9e-13 77.4 40 87.5
AUR62004477 Chenopodium quinoa HOM05D001318 ORTHO05D001152 2.9e-13 77.4 40 90.0
Cc11_g03600 Coffea canephora HOM05D001318 ORTHO05D001152 2.9e-13 77.4 40 90.0
DCAR_006971 Daucus carota HOM05D001318 ORTHO05D001152 2.9e-13 77.4 40 90.0
DCAR_008662 Daucus carota HOM05D001318 ORTHO05D001152 2.9e-13 77.4 40 90.0
Migut.B01856 Erythranthe guttata HOM05D001318 ORTHO05D001152 3.8e-13 77.0 40 90.0
Nn1g01886 Nelumbo nucifera HOM05D001318 ORTHO05D001152 3.8e-13 77.0 39 92.3
Gohir.A08G125700 Gossypium hirsutum HOM05D001318 ORTHO05D001152 4.9e-13 76.6 40 87.5
Aa31LG10G15700 Aethionema arabicum HOM05D001318 ORTHO05D001152 6.4e-13 76.3 40 87.5
Ah.05g179700 Amaranthus hybridus HOM05D001318 ORTHO05D001152 6.4e-13 76.3 40 87.5
PSO384G5067 Papaver somniferum HOM05D001318 ORTHO05D001152 6.4e-13 76.3 40 87.5
unitig_736.g22812 Utricularia gibba HOM05D001318 ORTHO05D001152 8.4e-13 75.9 40 87.5
HanXRQChr11g0334041 Helianthus annuus HOM05D001318 ORTHO05D001152 1.1e-12 75.5 41 85.4
ECA246G1590 Erigeron canadensis HOM05D001318 ORTHO05D001152 1.4e-12 75.1 41 85.4
Lj7A501G46 Lonicera japonica HOM05D001318 ORTHO05D001152 1.4e-12 75.1 40 87.5
MD01G1079500 Malus domestica HOM05D001318 ORTHO05D001152 1.4e-12 75.1 42 88.1
AL5G44210 Arabidopsis lyrata HOM05D001318 ORTHO05D001152 1.9e-12 74.7 45 82.2
Thhalv10001501m.g Eutrema salsugineum HOM05D001318 ORTHO05D001152 1.9e-12 74.7 40 85.0
TWI59G0130 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 2.5e-12 74.3 40 90.0
CsaV3_3G008120 Cucumis sativus L. HOM05D001318 ORTHO05D001152 3.2e-12 73.9 40 87.5
MBI06_g05048_MAGBIO Magnolia biondii HOM05D001318 ORTHO05D001152 3.2e-12 73.9 40 85.0
Nn3g19027 Nelumbo nucifera HOM05D001318 ORTHO05D001152 4.2e-12 73.6 40 87.5
PSO512G0001 Papaver somniferum HOM05D001318 ORTHO05D001152 4.2e-12 73.6 40 85.0
SalBow3G0525 Salvia bowleyana HOM05D001318 ORTHO05D001152 4.2e-12 73.6 40 85.0
CAN.G1207.5 Capsicum annuum HOM05D001318 ORTHO05D001152 5.5e-12 73.2 40 85.0
Sopen05g003230 Solanum pennellii HOM05D001318 ORTHO05D001152 5.5e-12 73.2 40 85.0
Nitab4.5_0000703g0030 Nicotiana tabacum HOM05D001318 ORTHO05D001152 7.1e-12 72.8 40 85.0
ATR0188G015 Amborella trichopoda HOM05D001318 ORTHO05D001152 9.3e-12 72.4 39 87.2
MELO3C006031.2 Cucumis melo HOM05D000122 ORTHO05D001152 9.3e-12 72.4 40 85.0
Sabra02G0142400 Salix brachista HOM05D001318 ORTHO05D001152 9.3e-12 72.4 36 88.9
Sc01g0002770 Simmondsia chinensis HOM05D001318 ORTHO05D001152 9.3e-12 72.4 40 85.0
GSVIVG01027086001 Vitis vinifera HOM05D001318 ORTHO05D001152 9.3e-12 72.4 40 85.0
Nitab4.5_0004485g0050 Nicotiana tabacum HOM05D001318 ORTHO05D001152 1.2e-11 72.0 40 82.5
PSO170G4448 Papaver somniferum HOM05D001318 ORTHO05D001152 2.1e-11 71.2 40 85.0
Solyc01g010520.3 Solanum lycopersicum HOM05D001318 ORTHO05D001152 2.7e-11 70.9 36 88.9
MSTRG.28255 Avicennia marina HOM05D001318 ORTHO05D001152 3.5e-11 70.5 40 82.5
Hund27205 Selenicereus undatus HOM05D001318 ORTHO05D001152 4.6e-11 70.1 40 82.5
SGA_v2.0_scaffold43G16369 Striga asiatica HOM05D001318 ORTHO05D001152 4.6e-11 70.1 45 77.8
MSTRG.4811 Avicennia marina HOM05D001318 ORTHO05D001152 6.0e-11 69.7 40 85.0
Oeu019763.2 Olea europaea HOM05D001318 ORTHO05D001152 6.0e-11 69.7 39 82.1
Solyc05g007270.4 Solanum lycopersicum HOM05D001318 ORTHO05D001152 6.0e-11 69.7 40 82.5
unitig_62.g23798 Utricularia gibba HOM05D001318 ORTHO05D001152 6.0e-11 69.7 40 85.0
Lj9C597T7 Lonicera japonica HOM05D001318 ORTHO05D001152 1.0e-10 68.9 36 88.9
Aqoxy5G04208 Aquilegia oxysepala HOM05D001318 ORTHO05D001152 1.8e-10 68.2 40 80.0
Oeu004944.2 Olea europaea HOM05D001318 ORTHO05D001152 3.0e-10 67.4 36 86.1
HPP92_020020 Vanilla planifolia HOM05D001318 ORTHO05D001152 5.1e-10 66.6 40 82.5
Migut.N01552 Erythranthe guttata HOM05D001318 ORTHO05D001152 1.1e-09 65.5 40 77.5
BcaC08g45151 Brassica carinata HOM05D001318 ORTHO05D001152 9.6e-09 62.4 44 72.7
A07p25680 Brassica napus HOM05D001318 ORTHO05D001152 9.6e-09 62.4 44 72.7
C06p27690 Brassica napus HOM05D001318 ORTHO05D001152 9.6e-09 62.4 44 72.7
BolC6t37940H Brassica oleracea HOM05D001318 ORTHO05D001152 9.6e-09 62.4 44 72.7
BraA07t30208Z Brassica rapa HOM05D001318 ORTHO05D001152 9.6e-09 62.4 44 72.7
Oeu008693.3 Olea europaea HOM05D001318 ORTHO05D001152 1.3e-08 62.0 36 80.6
Os05g0212400 Oryza sativa ssp. japonica HOM05D001318 ORTHO05D001152 1.3e-08 62.0 41 73.2
Oeu050738.1 Olea europaea HOM05D001318 ORTHO05D001152 1.6e-08 61.6 39 74.4
GSVIVG01028709001 Vitis vinifera HOM05D001318 ORTHO05D001152 2.8e-08 60.8 39 71.8
Zm00001eb119780 Zea mays HOM05D001318 ORTHO05D001152 2.8e-08 60.8 40 75.0
Zm00001eb338770 Zea mays HOM05D001318 ORTHO05D001152 2.8e-08 60.8 40 75.0
Prupe.2G308500 Prunus persica HOM05D001318 ORTHO05D001152 1.4e-07 58.5 40 67.5
MSTRG.20899 Avicennia marina HOM05D001318 ORTHO05D001152 6.9e-07 56.2 40 70.0
Mapoly0042s0066 Marchantia polymorpha HOM05D001318 ORTHO05D001152 1.5e-06 55.1 39 69.2
MD07G1286500 Malus domestica HOM05D001318 ORTHO05D001152 2.0e-06 54.7 36 75.0
MD01G1216500 Malus domestica HOM05D001318 ORTHO05D001152 4.5e-06 53.5 36 72.2
Actinidia28122 Actinidia chinensis HOM05D001318 ORTHO05D001152 5.8e-06 53.1 49 61.2
Ca_29804_v3 Cicer arietinum L. HOM05D001318 ORTHO05D001152 7.6e-06 52.8 25 96.0
Hund11881 Selenicereus undatus HOM05D006177 ORTHO05D001152 7.6e-06 52.8 40 62.5


User provided reference genes

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