Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G896 Trifolium pratense HOM05D000481 ORTHO05D003804 1.4e-61 239.6 135 100.0
Medtr6g048290 Medicago truncatula HOM05D000481 ORTHO05D003804 1.1e-45 186.8 133 82.7
Lj2g0019584 Lotus japonicus HOM05D000481 ORTHO05D003804 3.9e-43 178.3 129 73.6
Psat0ss1860g0240 Pisum sativum HOM05D000481 ORTHO05D003804 1.1e-42 176.8 133 79.7
VMungo0464G1795 Vigna mungo HOM05D000481 ORTHO05D003804 7.3e-42 174.1 129 72.9
Ca_20084_v3 Cicer arietinum L. HOM05D000481 ORTHO05D003804 1.6e-41 172.9 134 72.4
Phvul.004G109400 Phaseolus vulgaris HOM05D000481 ORTHO05D003804 3.6e-41 171.8 129 71.3
Glyma.09G132800 Glycine max HOM05D000481 ORTHO05D003804 6.8e-40 167.5 127 73.2
Glyma.16G179500 Glycine max HOM05D000481 ORTHO05D003804 2.0e-39 166.0 122 73.8
Lalb_Chr19g0130681 Lupinus albus HOM05D000481 ORTHO05D003804 9.9e-39 163.7 130 71.5
arahy.Tifrunner.gnm1.ann1.AH10MI Arachis hypogaea HOM05D000481 ORTHO05D003804 1.2e-36 156.8 132 65.9
arahy.Tifrunner.gnm1.ann1.LAZQ16 Arachis hypogaea HOM05D000481 ORTHO05D003804 1.3e-35 153.3 136 65.4
Lalb_Chr03g0034801 Lupinus albus HOM05D000481 ORTHO05D003804 8.6e-35 150.6 112 73.2
Cpa.g.sc107.103 Carica papaya HOM05D000481 ORTHO05D003804 6.4e-30 134.4 127 63.0
ClCG05G008330 Citrullus lanatus HOM05D000481 ORTHO05D003804 4.2e-29 131.7 131 56.5
QL09p012968 Quercus lobata HOM05D000481 ORTHO05D003804 4.6e-28 128.3 132 58.3
CiPaw.06G003000 Carya illinoinensis HOM05D000481 ORTHO05D003804 1.0e-27 127.1 105 65.7
CsaV3_3G017420 Cucumis sativus L. HOM05D000481 ORTHO05D003804 1.7e-27 126.3 132 56.1
Atru.chr1.380 Acer truncatum HOM05D000481 ORTHO05D003804 2.3e-27 125.9 105 66.7
Cfa016282 Carpinus fangiana HOM05D000481 ORTHO05D003804 2.3e-27 125.9 131 55.7
GSVIVG01028868001 Vitis vinifera HOM05D000481 ORTHO05D003804 3.9e-27 125.2 120 60.0
Potri.004G079800 Populus trichocarpa HOM05D000481 ORTHO05D003804 6.6e-27 124.4 132 56.1
CANSAT21G1604 Cannabis sativa HOM05D000481 ORTHO05D003804 8.7e-27 124.0 129 55.8
CSS0027480 Camellia sinensis var. sinensis HOM05D000481 ORTHO05D003804 1.1e-26 123.6 117 59.0
Sabra17G0120000 Salix brachista HOM05D000041 ORTHO05D003804 1.1e-26 123.6 130 55.4
MELO3C006941.2 Cucumis melo HOM05D000481 ORTHO05D003804 1.5e-26 123.2 133 54.1
Sed0024355 Sechium edule HOM05D000481 ORTHO05D003804 1.5e-26 123.2 127 57.5
MD07G1278400 Malus domestica HOM05D000481 ORTHO05D003804 1.9e-26 122.9 126 57.1
TWI39G0643 Tripterygium wilfordii HOM05D000481 ORTHO05D003804 1.9e-26 122.9 123 56.1
MD07G1247400 Malus domestica HOM05D002430 ORTHO05D003804 2.5e-26 122.5 126 56.3
Rhsim03G0190600 Rhododendron simsii HOM05D000481 ORTHO05D003804 2.5e-26 122.5 126 54.8
Actinidia08575 Actinidia chinensis HOM05D000481 ORTHO05D003804 4.3e-26 121.7 108 62.0
MD01G1207800 Malus domestica HOM05D000481 ORTHO05D003804 4.3e-26 121.7 126 56.3
CSS0034028 Camellia sinensis var. sinensis HOM05D000481 ORTHO05D003804 5.6e-26 121.3 109 64.2
CSS0043947 Camellia sinensis var. sinensis HOM05D000481 ORTHO05D003804 5.6e-26 121.3 109 64.2
Prupe.2G300300 Prunus persica HOM05D000481 ORTHO05D003804 5.6e-26 121.3 132 55.3
Gohir.D09G043800 Gossypium hirsutum HOM05D000481 ORTHO05D003804 9.6e-26 120.6 125 57.6
Gorai.006G050800 Gossypium raimondii HOM05D000481 ORTHO05D003804 9.6e-26 120.6 125 57.6
Manes.06G152000 Manihot esculenta HOM05D000481 ORTHO05D003804 9.6e-26 120.6 104 64.4
Gorai.004G117500 Gossypium raimondii HOM05D000481 ORTHO05D003804 1.3e-25 120.2 125 54.4
RcHm_v2.0_Chr1g0378231 Rosa chinensis HOM05D000481 ORTHO05D003804 1.3e-25 120.2 117 57.3
Thecc.03G183500 Theobroma cacao HOM05D000481 ORTHO05D003804 1.3e-25 120.2 125 54.4
TAR374G1275 Trochodendron aralioides HOM05D000481 ORTHO05D003804 1.3e-25 120.2 124 57.3
Actinidia34153 Actinidia chinensis HOM05D000481 ORTHO05D003804 2.1e-25 119.4 125 52.0
Ciclev10005686m.g Citrus clementina HOM05D000481 ORTHO05D003804 2.1e-25 119.4 103 70.9
Gohir.D08G109900 Gossypium hirsutum HOM05D000481 ORTHO05D003804 2.1e-25 119.4 123 55.3
Hma1.2p1_0274F.1_g110190 Hydrangea macrophylla HOM05D000481 ORTHO05D003804 2.8e-25 119.0 126 54.8
Potri.017G143132 Populus trichocarpa HOM05D000481 ORTHO05D003804 2.8e-25 119.0 127 56.7
Sed0008621 Sechium edule HOM05D000481 ORTHO05D003804 2.8e-25 119.0 118 59.3
SGA_v2.0_scaffold10G05297 Striga asiatica HOM05D000481 ORTHO05D003804 3.6e-25 118.6 127 54.3
COL.COLO4_10061 Corchorus olitorius HOM05D000481 ORTHO05D003804 4.8e-25 118.2 125 54.4
Duzib084G1260 Durio zibethinus HOM05D000481 ORTHO05D003804 4.8e-25 118.2 121 56.2
Eucgr.K00293 Eucalyptus grandis HOM05D000481 ORTHO05D003804 4.8e-25 118.2 125 55.2
FAN10G0986 Fragaria x ananassa HOM05D000481 ORTHO05D003804 4.8e-25 118.2 117 56.4
Gohir.A09G043000 Gossypium hirsutum HOM05D000481 ORTHO05D003804 4.8e-25 118.2 107 62.6
MBI11_g04752_MAGBIO Magnolia biondii HOM05D000481 ORTHO05D003804 4.8e-25 118.2 103 62.1
SalBow4G1927 Salvia bowleyana HOM05D000481 ORTHO05D003804 4.8e-25 118.2 103 62.1
Dinv35248 Davidia involucrata HOM05D000481 ORTHO05D003804 6.2e-25 117.9 104 61.5
Migut.F01088 Erythranthe guttata HOM05D000481 ORTHO05D003804 6.2e-25 117.9 116 59.5
Sabra04G0053000 Salix brachista HOM05D000481 ORTHO05D003804 6.2e-25 117.9 127 55.1
TWI23G0935 Tripterygium wilfordii HOM05D000481 ORTHO05D003804 8.1e-25 117.5 105 61.0
FAN03G1133 Fragaria x ananassa HOM05D000481 ORTHO05D003804 1.4e-24 116.7 118 55.9
FAN03G1262 Fragaria x ananassa HOM05D000481 ORTHO05D003804 1.4e-24 116.7 118 55.9
FAN01G0907 Fragaria x ananassa HOM05D000481 ORTHO05D003804 1.8e-24 116.3 118 55.9
Actinidia03136 Actinidia chinensis HOM05D000481 ORTHO05D003804 3.1e-24 115.5 126 50.8
FAN10G2649 Fragaria x ananassa HOM05D000481 ORTHO05D003804 4.0e-24 115.2 117 55.6
Peaxi162Scf00444g00120 Petunia axillaris HOM05D000481 ORTHO05D003804 4.0e-24 115.2 126 53.2
DCAR_009392 Daucus carota HOM05D000481 ORTHO05D003804 5.3e-24 114.8 106 59.4
MSTRG.8475 Avicennia marina HOM05D000481 ORTHO05D003804 6.9e-24 114.4 118 55.9
FvH4_7g30180 Fragaria vesca HOM05D000481 ORTHO05D003804 6.9e-24 114.4 118 55.9
FAN06G0755 Fragaria x ananassa HOM05D000481 ORTHO05D003804 6.9e-24 114.4 118 55.9
FAN06G2535 Fragaria x ananassa HOM05D000481 ORTHO05D003804 6.9e-24 114.4 118 55.9
Hma1.2p1_0327F.1_g126400 Hydrangea macrophylla HOM05D000481 ORTHO05D003804 6.9e-24 114.4 111 57.7
PGR042G0787 Punica granatum HOM05D000481 ORTHO05D003804 6.9e-24 114.4 125 55.2
vmacro06630 Vaccinium macrocarpon HOM05D000481 ORTHO05D003804 9.0e-24 114.0 108 56.5
TAR629G2084 Trochodendron aralioides HOM05D000481 ORTHO05D003804 1.2e-23 113.6 104 61.5
AUR62021128 Chenopodium quinoa HOM05D000481 ORTHO05D003804 1.5e-23 113.2 105 59.0
Lj1A1004G78 Lonicera japonica HOM05D000481 ORTHO05D003804 1.5e-23 113.2 126 55.6
Nitab4.5_0000084g0370 Nicotiana tabacum HOM05D000481 ORTHO05D003804 1.5e-23 113.2 126 52.4
Oeu060464.1 Olea europaea HOM05D000481 ORTHO05D003804 1.5e-23 113.2 123 52.8
PGR142G2800 Punica granatum HOM05D000481 ORTHO05D003804 1.5e-23 113.2 125 52.8
EL10Ac3g05429 Beta vulgaris HOM05D000481 ORTHO05D003804 2.0e-23 112.8 120 55.0
Nn6g33308 Nelumbo nucifera HOM05D000481 ORTHO05D003804 2.6e-23 112.5 103 63.1
Nitab4.5_0000572g0090 Nicotiana tabacum HOM05D000481 ORTHO05D003804 3.4e-23 112.1 126 51.6
Dinv28391 Davidia involucrata HOM05D000481 ORTHO05D003804 4.5e-23 111.7 127 54.3
Cc02_g02430 Coffea canephora HOM05D000481 ORTHO05D003804 7.6e-23 110.9 128 53.1
MBI04_g39572_MAGBIO Magnolia biondii HOM05D000481 ORTHO05D003804 1.3e-22 110.2 105 55.2
ECA233G0680 Erigeron canadensis HOM05D000481 ORTHO05D003804 2.2e-22 109.4 104 58.7
Hund09776 Selenicereus undatus HOM05D000481 ORTHO05D003804 2.2e-22 109.4 105 57.1
PSO782G3050 Papaver somniferum HOM05D000481 ORTHO05D003804 3.8e-22 108.6 114 56.1
Sp7g23720 Schrenkiella parvula HOM05D000481 ORTHO05D003804 4.9e-22 108.2 130 48.5
Sp7g23700 Schrenkiella parvula HOM05D000481 ORTHO05D003804 6.4e-22 107.8 126 50.8
CAN.G126.11 Capsicum annuum HOM05D000481 ORTHO05D003804 8.4e-22 107.5 125 52.0
Lsat_1_v5_gn_2_131280 Lactuca sativa HOM05D000481 ORTHO05D003804 8.4e-22 107.5 107 60.7
THA.LOC104825111 Tarenaya hassleriana HOM05D000481 ORTHO05D003804 8.4e-22 107.5 119 53.8
Actinidia31837 Actinidia chinensis HOM05D000481 ORTHO05D003804 1.1e-21 107.1 126 50.0
ECA238G0271 Erigeron canadensis HOM05D000041 ORTHO05D000061 1.1e-21 107.1 130 48.5
Gohir.A08G098300 Gossypium hirsutum HOM05D000481 ORTHO05D003804 1.1e-21 107.1 103 61.2
HanXRQChr14g0462521 Helianthus annuus HOM05D000481 ORTHO05D003804 1.1e-21 107.1 104 58.7
MSTRG.75 Avicennia marina HOM05D000481 ORTHO05D003804 1.4e-21 106.7 100 58.0
Solyc03g008010.3 Solanum lycopersicum HOM05D000481 ORTHO05D003804 1.9e-21 106.3 102 57.8
Sopen03g003940 Solanum pennellii HOM05D000481 ORTHO05D003804 1.9e-21 106.3 102 57.8
THA.LOC104811960 Tarenaya hassleriana HOM05D000481 ORTHO05D003804 1.9e-21 106.3 104 56.7
DCAR_014518 Daucus carota HOM05D000481 ORTHO05D003804 3.2e-21 105.5 113 52.2
Duzib068G1295 Durio zibethinus HOM05D000481 ORTHO05D003804 3.2e-21 105.5 121 52.1
Zm00001eb021890 Zea mays HOM05D000481 ORTHO05D003804 3.2e-21 105.5 128 47.7
AT4G25680 Arabidopsis thaliana HOM05D000481 ORTHO05D003804 4.2e-21 105.1 126 51.6
SalBow2G3393 Salvia bowleyana HOM05D000481 ORTHO05D003804 4.2e-21 105.1 118 52.5
HanXRQChr05g0130131 Helianthus annuus HOM05D000481 ORTHO05D003804 5.4e-21 104.8 104 55.8
AT4G25660 Arabidopsis thaliana HOM05D000481 ORTHO05D003804 7.1e-21 104.4 126 53.2
Gohir.A09G182500 Gossypium hirsutum HOM05D000481 ORTHO05D003804 7.1e-21 104.4 126 49.2
Oeu034004.1 Olea europaea HOM05D000481 ORTHO05D003804 7.1e-21 104.4 121 52.9
PSO478G0109 Papaver somniferum HOM05D000481 ORTHO05D003804 7.1e-21 104.4 111 55.0
PGSC0003DMG400010126 Solanum tuberosum HOM05D000481 ORTHO05D003804 7.1e-21 104.4 102 56.9
ATR0661G151 Amborella trichopoda HOM05D000481 ORTHO05D003804 9.3e-21 104.0 117 53.8
AL7G27400 Arabidopsis lyrata HOM05D000481 ORTHO05D003804 1.2e-20 103.6 126 50.8
Os10g0533900 Oryza sativa ssp. japonica HOM05D000481 ORTHO05D003804 1.2e-20 103.6 105 52.4
Sc19g0001300 Simmondsia chinensis HOM05D000481 ORTHO05D003804 1.6e-20 103.2 128 50.0
Ah.07g206600 Amaranthus hybridus HOM05D000481 ORTHO05D003804 2.1e-20 102.8 120 50.0
Ah.13g069140 Amaranthus hybridus HOM05D000481 ORTHO05D003804 2.1e-20 102.8 125 49.6
AUR62031416 Chenopodium quinoa HOM05D000481 ORTHO05D003804 2.7e-20 102.4 89 60.7
Ca_10729_v3 Cicer arietinum L. HOM05D000481 ORTHO05D003804 3.5e-20 102.1 109 57.8
Thhalv10026034m.g Eutrema salsugineum HOM05D000481 ORTHO05D003804 3.5e-20 102.1 131 47.3
Gorai.006G199100 Gossypium raimondii HOM05D000481 ORTHO05D003804 3.5e-20 102.1 124 49.2
Aqoxy5G04090 Aquilegia oxysepala HOM05D000481 ORTHO05D003804 7.9e-20 100.9 122 53.3
BcaB03g12483 Brassica carinata HOM05D000481 ORTHO05D003804 7.9e-20 100.9 123 49.6
Gohir.D09G177100 Gossypium hirsutum HOM05D000481 ORTHO05D003804 7.9e-20 100.9 124 48.4
AL7G27420 Arabidopsis lyrata HOM05D000481 ORTHO05D003804 1.0e-19 100.5 127 55.9
C08p09610 Brassica napus HOM05D000481 ORTHO05D003804 1.0e-19 100.5 107 53.3
Psat6g196400 Pisum sativum HOM05D000481 ORTHO05D003804 1.0e-19 100.5 105 57.1
TAR375G0573 Trochodendron aralioides HOM05D000481 ORTHO05D003804 2.3e-19 99.4 96 56.2
BolC1t02048H Brassica oleracea HOM05D000481 ORTHO05D003804 3.0e-19 99.0 126 47.6
BraA01t01647Z Brassica rapa HOM05D000481 ORTHO05D003804 3.9e-19 98.6 126 46.8
Lsat_1_v5_gn_8_6621 Lactuca sativa HOM05D000481 ORTHO05D003804 3.9e-19 98.6 103 56.3
Carub.0007s1531 Capsella rubella HOM05D000481 ORTHO05D003804 5.1e-19 98.2 126 50.8
BraA08t34054Z Brassica rapa HOM05D000481 ORTHO05D003804 6.7e-19 97.8 123 48.8
Carub.0007s1528 Capsella rubella HOM05D000481 ORTHO05D003804 6.7e-19 97.8 126 47.6
Thhalv10026072m.g Eutrema salsugineum HOM05D000481 ORTHO05D003804 6.7e-19 97.8 126 46.8
A08p21020 Brassica napus HOM05D000481 ORTHO05D003804 8.7e-19 97.4 122 48.4
BcaC07g38206 Brassica carinata HOM05D000481 ORTHO05D003804 1.5e-18 96.7 106 51.9
BolC8t48629H Brassica oleracea HOM05D000481 ORTHO05D003804 1.5e-18 96.7 106 51.9
Aa31LG3G8910 Aethionema arabicum HOM05D000481 ORTHO05D003804 1.9e-18 96.3 124 48.4
Sc13g0009140 Simmondsia chinensis HOM05D000481 ORTHO05D003804 2.5e-18 95.9 105 52.4
Atru.ctg97_1.15 Acer truncatum HOM05D000481 ORTHO05D003804 4.3e-18 95.1 125 49.6
BraA01t01644Z Brassica rapa HOM05D000481 ORTHO05D003804 7.4e-18 94.4 106 50.0
unitig_22.g5221 Utricularia gibba HOM05D000368 ORTHO05D003804 1.3e-17 93.6 123 48.0
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 1.6e-17 93.2 119 45.4
BcaNung07308 Brassica carinata HOM05D000481 ORTHO05D003804 2.1e-17 92.8 106 49.1
BolC1t02045H Brassica oleracea HOM05D000481 ORTHO05D003804 2.1e-17 92.8 106 49.1
A01p16920 Brassica napus HOM05D000481 ORTHO05D003804 2.8e-17 92.4 106 49.1
C01p21200 Brassica napus HOM05D000481 ORTHO05D003804 2.8e-17 92.4 104 50.0
CDE04G0463 Ceratophyllum demersum HOM05D000481 ORTHO05D003804 3.6e-17 92.0 98 55.1
Medtr1g100100 Medicago truncatula HOM05D000481 ORTHO05D003804 1.1e-16 90.5 102 54.9
CDE07G1341 Ceratophyllum demersum HOM05D000481 ORTHO05D003804 5.3e-16 88.2 98 54.1
HPP92_008925 Vanilla planifolia HOM05D000481 ORTHO05D003804 3.4e-15 85.5 120 45.8
CSS0035045 Camellia sinensis var. sinensis HOM05D000481 ORTHO05D003804 9.9e-15 84.0 106 50.0
C01p21220 Brassica napus HOM05D000481 ORTHO05D003804 2.9e-14 82.4 89 51.7
A01p16940 Brassica napus HOM05D000481 ORTHO05D003804 3.8e-14 82.0 48 81.2
SEGI_00852 Sequoiadendron giganteum HOM05D000481 ORTHO05D003804 4.9e-14 81.6 131 46.6
Lj8C18G16 Lonicera japonica HOM05D000481 ORTHO05D003804 6.4e-14 81.3 48 81.2
Glyma.10G231400 Glycine max HOM05D000481 ORTHO05D003804 1.2e-12 77.0 118 47.5
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 1.6e-09 66.6 36 83.3
Mapoly0015s0018 Marchantia polymorpha HOM05D000481 ORTHO05D003804 2.8e-09 65.9 80 50.0
BcaB03g12479 Brassica carinata HOM05D008661 ORTHO05D010872 6.2e-09 64.7 48 62.5
Os06g0107000 Oryza sativa ssp. japonica HOM05D000481 ORTHO05D003804 1.1e-08 63.9 119 34.5
Zm00001eb379290 Zea mays HOM05D000481 ORTHO05D003804 2.4e-08 62.8 98 40.8
AagrBONN_evm.TU.Sc2ySwM_228.3080 Anthoceros agrestis HOM05D000481 ORTHO05D003804 4.0e-08 62.0 74 45.9
CARHR233100 Cardamine hirsuta HOM05D000481 ORTHO05D003804 6.9e-08 61.2 102 47.1
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 4.5e-07 58.5 97 37.1
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 4.5e-07 58.5 97 37.1
BcaNung07306 Brassica carinata HOM05D000481 ORTHO05D003804 7.6e-07 57.8 105 39.0
SMO119G0290 Selaginella moellendorffii HOM05D000481 ORTHO05D003804 1.0e-06 57.4 41 58.5
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 1.3e-06 57.0 98 37.8
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 4.9e-06 55.1 98 36.7


User provided reference genes

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