Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 3.2e-81 305.1 157 100.0
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 1.5e-54 216.5 160 76.9
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 5.9e-51 204.5 166 72.3
Psat3g078880 Pisum sativum HOM05D002974 ORTHO05D002992 1.4e-31 140.2 107 70.1
Ca_08391_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 2.0e-30 136.3 113 70.8
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.5e-25 120.2 174 50.0
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.9e-25 119.8 149 53.0
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 6.1e-24 114.8 173 46.8
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.8e-23 113.2 160 49.4
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 8.8e-23 110.9 143 52.4
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 4.4e-22 108.6 170 47.6
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 4.1e-20 102.1 151 48.3
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 7.7e-19 97.8 147 49.0
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.2e-15 85.1 150 46.7
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.5e-14 83.6 141 44.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 3.4e-14 82.4 135 45.9
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.4e-14 82.4 135 43.0
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 5.7e-14 81.6 164 40.2
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 7.5e-14 81.3 129 43.4
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 9.8e-14 80.9 108 55.6
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 9.8e-14 80.9 161 42.9
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.3e-13 80.5 133 45.9
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 1.3e-13 80.5 134 41.0
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.7e-13 80.1 129 41.9
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 2.2e-13 79.7 157 39.5
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.9e-13 78.6 142 42.3
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.1e-12 77.4 152 37.5
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.1e-12 75.9 129 45.0
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.1e-12 75.5 140 40.7
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 5.4e-12 75.1 196 37.8
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 5.4e-12 75.1 163 38.7
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 7.0e-12 74.7 134 35.8
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 9.2e-12 74.3 139 39.6
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.6e-11 73.6 158 42.4
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.6e-11 73.6 134 41.8
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 2.7e-11 72.8 131 38.9
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 7.8e-11 71.2 109 47.7
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.0e-10 70.9 146 42.5
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 1.0e-10 70.9 125 44.8
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.0e-10 70.9 160 40.0
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 1.3e-10 70.5 135 41.5
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.7e-10 70.1 132 42.4
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 2.3e-10 69.7 166 37.3
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.3e-10 69.7 156 41.7
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 3.8e-10 68.9 147 38.8
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.8e-10 68.9 151 39.7
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 5.0e-10 68.6 148 41.2
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 6.6e-10 68.2 136 43.4
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 8.6e-10 67.8 107 48.6
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 8.6e-10 67.8 144 42.4
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 1.1e-09 67.4 139 39.6
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 1.5e-09 67.0 136 36.8
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 1.9e-09 66.6 57 68.4
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 2.5e-09 66.2 136 36.8
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 2.5e-09 66.2 136 36.8
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.5e-09 66.2 141 41.8
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 3.3e-09 65.9 120 40.0
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 4.3e-09 65.5 101 45.5
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 4.3e-09 65.5 128 40.6
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 4.3e-09 65.5 64 57.8
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 5.6e-09 65.1 69 60.9
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 5.6e-09 65.1 157 35.7
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 5.6e-09 65.1 129 41.1
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 7.3e-09 64.7 135 40.0
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 7.3e-09 64.7 160 40.0
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 9.5e-09 64.3 47 74.5
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 9.5e-09 64.3 143 32.9
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 9.5e-09 64.3 131 38.9
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.2e-08 63.9 141 36.2
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 1.2e-08 63.9 78 56.4
ECA248G1904 Erigeron canadensis HOM05D002974 ORTHO05D002992 2.8e-08 62.8 71 50.7
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 2.8e-08 62.8 119 37.0
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.7e-08 62.0 153 40.5
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 6.1e-08 61.6 119 38.7
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 6.1e-08 61.6 119 38.7
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 6.1e-08 61.6 119 38.7
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 6.1e-08 61.6 71 54.9
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.1e-08 61.6 70 57.1
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 6.1e-08 61.6 101 41.6
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 6.1e-08 61.6 69 52.2
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 6.1e-08 61.6 71 52.1
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 8.0e-08 61.2 147 35.4
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 8.0e-08 61.2 137 34.3
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 1.0e-07 60.8 155 35.5
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.0e-07 60.8 110 40.9
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.0e-07 60.8 145 31.7
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 1.8e-07 60.1 121 38.8
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.8e-07 60.1 113 41.6
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.8e-07 60.1 138 35.5
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 1.8e-07 60.1 125 39.2
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 2.3e-07 59.7 121 40.5
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 2.3e-07 59.7 121 40.5
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 3.0e-07 59.3 139 36.7
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 3.0e-07 59.3 138 34.1
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.0e-07 59.3 52 65.4
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.0e-07 58.9 70 54.3
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.2e-07 58.5 70 55.7
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 5.2e-07 58.5 137 33.6
SalBow1G0087 Salvia bowleyana HOM05D064831 ORTHO05D002992 6.8e-07 58.2 45 71.1
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.8e-07 58.2 142 38.0
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 8.9e-07 57.8 51 66.7
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 8.9e-07 57.8 73 54.8
SalBow1G1187 Salvia bowleyana HOM05D064831 ORTHO05D002992 8.9e-07 57.8 51 62.7
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 1.2e-06 57.4 46 69.6
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 1.2e-06 57.4 54 59.3
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.2e-06 57.4 76 47.4
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.2e-06 57.4 76 47.4
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 1.5e-06 57.0 35 80.0
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.5e-06 57.0 120 40.8
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 2.0e-06 56.6 44 68.2
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 2.0e-06 56.6 44 68.2
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 2.0e-06 56.6 43 67.4
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 2.6e-06 56.2 131 35.1
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 2.6e-06 56.2 137 38.0
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 2.6e-06 56.2 40 70.0
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 3.4e-06 55.8 132 37.9
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.4e-06 55.8 90 43.3
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 3.4e-06 55.8 65 55.4
Lsat_1_v5_gn_5_156980 Lactuca sativa HOM05D002974 ORTHO05D002992 3.4e-06 55.8 117 32.5
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 3.4e-06 55.8 54 61.1
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 4.4e-06 55.5 48 60.4
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 4.4e-06 55.5 48 60.4
SGA_v2.0_scaffold69G23150 Striga asiatica HOM05D002974 ORTHO05D002992 4.4e-06 55.5 76 50.0
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 5.8e-06 55.1 44 65.9
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.8e-06 55.1 74 45.9
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 5.8e-06 55.1 39 71.8
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 5.8e-06 55.1 39 71.8
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 7.5e-06 54.7 54 57.4
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 7.5e-06 54.7 147 34.7
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 7.5e-06 54.7 49 65.3
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 7.5e-06 54.7 71 53.5
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 7.5e-06 54.7 38 73.7
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 7.5e-06 54.7 43 65.1
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 7.5e-06 54.7 140 37.1
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.8e-06 54.3 59 54.2
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 9.8e-06 54.3 130 34.6
Os05g0491700 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 9.8e-06 54.3 43 65.1
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 9.8e-06 54.3 78 47.4
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 9.8e-06 54.3 38 73.7
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 9.8e-06 54.3 63 50.8


User provided reference genes

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