Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.9e-52 208.8 96 100.0
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 3.5e-46 188.0 97 91.8
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 6.6e-29 130.6 96 64.6
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 8.6e-29 130.2 94 58.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.9e-28 129.0 110 59.1
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.3e-21 106.3 94 52.1
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.3e-21 105.5 89 52.8
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 3.9e-21 104.8 96 51.0
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 5.1e-21 104.4 92 48.9
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 5.1e-21 104.4 92 48.9
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 8.6e-21 103.6 92 48.9
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.1e-20 103.2 92 52.2
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.9e-20 102.4 88 53.4
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 3.3e-20 101.7 96 52.1
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 4.3e-20 101.3 97 48.5
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 5.6e-20 100.9 101 48.5
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 5.6e-20 100.9 90 50.0
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 7.3e-20 100.5 101 49.5
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.2e-19 99.8 101 48.5
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.6e-19 99.4 100 48.0
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.1e-19 99.0 96 51.0
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 2.1e-19 99.0 99 50.5
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 2.8e-19 98.6 99 47.5
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 2.8e-19 98.6 92 51.1
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.8e-19 98.6 95 49.5
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.6e-19 98.2 96 50.0
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 3.6e-19 98.2 109 46.8
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.6e-19 98.2 95 47.4
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.7e-19 97.8 107 46.7
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 6.2e-19 97.4 93 50.5
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 6.2e-19 97.4 95 46.3
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 8.1e-19 97.1 102 45.1
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.1e-18 96.7 100 47.0
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.4e-18 96.3 93 46.2
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.4e-18 96.3 100 46.0
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.8e-18 95.9 97 47.4
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.8e-18 95.9 107 45.8
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.8e-18 95.9 102 47.1
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 2.3e-18 95.5 97 48.5
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 2.3e-18 95.5 96 49.0
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.3e-18 95.5 95 48.4
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.3e-18 95.5 95 48.4
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 3.1e-18 95.1 101 46.5
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 3.1e-18 95.1 95 48.4
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 4.0e-18 94.7 91 49.5
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.2e-18 94.4 89 48.3
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 5.2e-18 94.4 107 43.0
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 6.8e-18 94.0 98 50.0
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 8.9e-18 93.6 97 48.5
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.9e-18 93.6 98 44.9
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.9e-18 93.6 98 44.9
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 8.9e-18 93.6 98 44.9
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 8.9e-18 93.6 97 46.4
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 8.9e-18 93.6 99 46.5
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 8.9e-18 93.6 97 50.5
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.2e-17 93.2 103 48.5
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.2e-17 93.2 101 44.6
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.2e-17 93.2 101 44.6
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.2e-17 93.2 101 44.6
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.2e-17 93.2 98 49.0
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.2e-17 93.2 100 44.0
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.2e-17 93.2 91 47.3
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.5e-17 92.8 84 51.2
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.5e-17 92.8 105 43.8
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.0e-17 92.4 95 48.4
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.0e-17 92.4 95 48.4
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 2.0e-17 92.4 92 50.0
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.6e-17 92.0 106 42.5
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.6e-17 92.0 103 41.7
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 2.6e-17 92.0 100 45.0
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 3.4e-17 91.7 103 42.7
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 4.4e-17 91.3 98 44.9
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 7.6e-17 90.5 102 46.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 7.6e-17 90.5 112 41.1
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 9.9e-17 90.1 102 45.1
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 9.9e-17 90.1 110 40.9
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 9.9e-17 90.1 100 45.0
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.3e-16 89.7 102 43.1
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-16 89.7 102 43.1
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-16 89.7 102 43.1
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.3e-16 89.7 99 48.5
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.3e-16 89.7 101 44.6
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.3e-16 89.7 99 42.4
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.7e-16 89.4 103 43.7
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 2.2e-16 89.0 110 42.7
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 2.2e-16 89.0 104 45.2
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 2.2e-16 89.0 101 41.6
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 3.7e-16 88.2 104 43.3
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.7e-16 88.2 101 43.6
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 3.7e-16 88.2 100 48.0
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 3.7e-16 88.2 104 43.3
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 3.7e-16 88.2 103 44.7
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 6.4e-16 87.4 110 42.7
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 6.4e-16 87.4 110 43.6
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 8.3e-16 87.0 102 43.1
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 8.3e-16 87.0 107 43.0
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 8.3e-16 87.0 106 39.6
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 8.3e-16 87.0 106 39.6
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.1e-15 86.7 102 45.1
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.4e-15 86.3 110 42.7
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.9e-15 85.9 98 45.9
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.9e-15 85.9 103 45.6
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.4e-15 85.5 84 47.6
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.4e-15 85.5 101 42.6
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 2.4e-15 85.5 102 44.1
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 3.2e-15 85.1 103 42.7
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 3.2e-15 85.1 104 41.3
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 3.2e-15 85.1 107 39.3
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.2e-15 85.1 109 42.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 7.1e-15 84.0 100 42.0
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 7.1e-15 84.0 102 44.1
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.6e-14 82.8 103 45.6
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.6e-14 82.8 93 39.8
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 2.1e-14 82.4 106 41.5
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 2.7e-14 82.0 47 66.0
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.7e-14 82.0 117 40.2
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.7e-14 82.0 102 43.1
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 6.0e-14 80.9 111 41.4
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.3e-13 79.7 81 49.4
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.3e-13 79.7 86 40.7
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.9e-13 78.2 99 43.4
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.9e-13 78.2 82 43.9
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.9e-13 78.2 87 47.1
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.5e-12 75.5 86 39.5
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 5.6e-12 74.3 51 52.9
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 7.3e-12 73.9 88 40.9
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 7.3e-12 73.9 46 58.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 7.3e-12 73.9 92 34.8
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.6e-11 72.8 45 57.8
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.1e-11 72.4 104 37.5
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.8e-11 72.0 46 56.5
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.8e-11 72.0 45 60.0
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.2e-09 66.6 74 40.5
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.2e-09 66.6 93 39.8
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.5e-09 66.2 45 48.9
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.5e-09 66.2 77 42.9
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 2.0e-09 65.9 43 55.8
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 3.4e-09 65.1 45 53.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 7.6e-09 63.9 79 38.0
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 7.6e-09 63.9 70 44.3
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.9e-07 59.3 60 45.0
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.2e-07 58.5 43 48.8
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 7.1e-07 57.4 43 48.8
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 7.8e-06 53.9 49 44.9


User provided reference genes

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