Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8906 Trifolium pratense HOM05D002011 ORTHO05D001948 1.4e-79 299.7 159 100.0
TPR.G19169 Trifolium pratense HOM05D002011 ORTHO05D001948 2.9e-50 202.2 126 87.3
Lj3g0008755 Lotus japonicus HOM05D002011 ORTHO05D001948 4.0e-39 165.2 155 64.5
VMungo1080G1625 Vigna mungo HOM05D002011 ORTHO05D001948 1.2e-30 137.1 151 58.9
Phvul.005G181100 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 4.9e-29 131.7 150 55.3
Glyma.15G004800 Glycine max HOM05D002011 ORTHO05D001948 8.4e-29 131.0 151 58.9
Lalb_Chr24g0395351 Lupinus albus HOM05D002011 ORTHO05D001948 1.7e-26 123.2 140 55.0
Lalb_Chr22g0350711 Lupinus albus HOM05D002011 ORTHO05D001948 7.1e-20 101.3 142 47.2
Psat5g304320 Pisum sativum HOM05D002011 ORTHO05D001948 9.3e-20 100.9 143 51.7
arahy.Tifrunner.gnm1.ann1.H5ECBD Arachis hypogaea HOM05D002011 ORTHO05D001948 4.6e-19 98.6 150 46.7
arahy.Tifrunner.gnm1.ann1.W5XW0C Arachis hypogaea HOM05D002011 ORTHO05D001948 4.6e-19 98.6 150 46.7
Glyma.13G369000 Glycine max HOM05D002011 ORTHO05D001948 4.6e-19 98.6 118 54.2
MD09G1223300 Malus domestica HOM05D002011 ORTHO05D001948 8.7e-18 94.4 151 46.4
Prupe.3G095200 Prunus persica HOM05D002011 ORTHO05D001948 4.3e-17 92.0 149 47.0
QL05p034085 Quercus lobata HOM05D002011 ORTHO05D001948 5.6e-17 91.7 153 43.8
Cpa.g.sc10.124 Carica papaya HOM05D002011 ORTHO05D001948 7.3e-17 91.3 139 44.6
Dinv23313 Davidia involucrata HOM05D002011 ORTHO05D001948 1.3e-16 90.5 146 45.9
CiPaw.01G252000 Carya illinoinensis HOM05D002011 ORTHO05D001948 1.6e-16 90.1 141 42.6
Medtr2g104770 Medicago truncatula HOM05D002011 ORTHO05D001948 1.6e-16 90.1 148 44.6
MD17G1219700 Malus domestica HOM05D002011 ORTHO05D001948 8.1e-16 87.8 149 45.6
Ca_25896_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 2.4e-15 86.3 154 39.6
Oeu010089.1 Olea europaea HOM05D002011 ORTHO05D001948 9.0e-15 84.3 157 39.5
Actinidia08950 Actinidia chinensis HOM05D002011 ORTHO05D001948 1.2e-14 84.0 133 46.6
Ca_29512_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 1.5e-14 83.6 150 39.3
Potri.017G053900 Populus trichocarpa HOM05D002011 ORTHO05D001948 2.0e-14 83.2 140 44.3
Peaxi162Scf00332g00224 Petunia axillaris HOM05D002011 ORTHO05D001948 3.4e-14 82.4 140 43.6
Nn8g39727 Nelumbo nucifera HOM05D002011 ORTHO05D001948 5.8e-14 81.6 151 41.1
Sabra17G0040900 Salix brachista HOM05D002011 ORTHO05D001948 5.8e-14 81.6 140 45.7
Sabra17G0045900 Salix brachista HOM05D002011 ORTHO05D001948 5.8e-14 81.6 140 46.4
Hund03478 Selenicereus undatus HOM05D002011 ORTHO05D001948 9.9e-14 80.9 148 41.9
MSTRG.22780 Avicennia marina HOM05D002011 ORTHO05D001948 1.7e-13 80.1 141 39.0
Cfa001910 Carpinus fangiana HOM05D002011 ORTHO05D001948 1.7e-13 80.1 128 44.5
Ciclev10026302m.g Citrus clementina HOM05D002011 ORTHO05D001948 3.8e-13 79.0 141 42.6
TWI63G1833 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 4.9e-13 78.6 137 40.9
Nitab4.5_0005934g0050 Nicotiana tabacum HOM05D002011 ORTHO05D001948 6.4e-13 78.2 152 39.5
VMungo1309G3164 Vigna mungo HOM05D002011 ORTHO05D001948 6.4e-13 78.2 161 39.8
Cc04_g04820 Coffea canephora HOM05D002011 ORTHO05D001948 1.1e-12 77.4 151 40.4
FvH4_6g29000 Fragaria vesca HOM05D002011 ORTHO05D001948 1.4e-12 77.0 151 41.1
Lj5C77G14 Lonicera japonica HOM05D002011 ORTHO05D001948 1.4e-12 77.0 136 41.2
PGSC0003DMG400014198 Solanum tuberosum HOM05D002011 ORTHO05D001948 1.4e-12 77.0 146 41.1
Ca_15760_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 2.4e-12 76.3 150 39.3
Glyma.04G063900 Glycine max HOM05D002011 ORTHO05D001948 5.4e-12 75.1 149 38.9
RcHm_v2.0_Chr2g0133521 Rosa chinensis HOM05D002011 ORTHO05D001948 5.4e-12 75.1 135 43.7
FAN14G4768 Fragaria x ananassa HOM05D002011 ORTHO05D001948 1.2e-11 73.9 151 40.4
SGA_v2.0_scaffold26G11326 Striga asiatica HOM05D002011 ORTHO05D001948 1.6e-11 73.6 144 38.9
PGR102G1217 Punica granatum HOM05D002011 ORTHO05D001948 2.1e-11 73.2 129 40.3
Sed0008145 Sechium edule HOM05D002011 ORTHO05D001948 2.1e-11 73.2 149 43.6
FAN09G3914 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.7e-11 72.8 147 40.1
Potri.001G313900 Populus trichocarpa HOM05D002011 ORTHO05D001948 3.5e-11 72.4 132 42.4
Rhsim12G0188600 Rhododendron simsii HOM05D002011 ORTHO05D001948 3.5e-11 72.4 125 44.0
CANSAT56G3958 Cannabis sativa HOM05D002011 ORTHO05D001948 4.6e-11 72.0 138 39.9
GSVIVG01017543001 Vitis vinifera HOM05D002011 ORTHO05D001948 4.6e-11 72.0 145 38.6
CSS0010574 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 6.0e-11 71.6 136 42.6
EL10Ac2g04150 Beta vulgaris HOM05D002011 ORTHO05D001948 7.9e-11 71.2 138 39.1
Medtr3g106340 Medicago truncatula HOM05D002011 ORTHO05D001948 7.9e-11 71.2 143 38.5
GSVIVG01035917001 Vitis vinifera HOM05D002011 ORTHO05D001948 7.9e-11 71.2 147 38.1
Haze_16633 Corylus avellana HOM05D002011 ORTHO05D001948 1.0e-10 70.9 125 39.2
Migut.D01093 Erythranthe guttata HOM05D002011 ORTHO05D001948 1.0e-10 70.9 148 39.2
Glyma.06G065100 Glycine max HOM05D002011 ORTHO05D001948 1.0e-10 70.9 150 38.7
Medtr4g009195 Medicago truncatula HOM05D002011 ORTHO05D001948 1.0e-10 70.9 158 36.7
TAR383G0822 Trochodendron aralioides HOM05D002011 ORTHO05D001948 1.0e-10 70.9 135 43.7
Manes.16G126300 Manihot esculenta HOM05D002011 ORTHO05D001948 1.3e-10 70.5 145 34.5
MSTRG.9415 Avicennia marina HOM05D002011 ORTHO05D001948 1.7e-10 70.1 138 36.2
CiPaw.02G160500 Carya illinoinensis HOM05D002011 ORTHO05D001948 1.7e-10 70.1 109 45.0
Eucgr.F03942 Eucalyptus grandis HOM05D002011 ORTHO05D001948 1.7e-10 70.1 131 42.0
FAN05G1371 Fragaria x ananassa HOM05D002011 ORTHO05D001948 1.7e-10 70.1 148 41.2
FAN05G4451 Fragaria x ananassa HOM05D002011 ORTHO05D001948 1.7e-10 70.1 148 41.2
Oeu027834.1 Olea europaea HOM05D002011 ORTHO05D001948 1.7e-10 70.1 136 39.0
Sc23g0006520 Simmondsia chinensis HOM05D002011 ORTHO05D001948 1.7e-10 70.1 132 40.2
Solyc03g117210.4 Solanum lycopersicum HOM05D002011 ORTHO05D001948 1.7e-10 70.1 145 36.6
FAN02G4077 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.3e-10 69.7 148 41.2
Sc09g0010370 Simmondsia chinensis HOM05D002011 ORTHO05D001948 3.0e-10 69.3 134 35.8
Cpa.g.sc127.1 Carica papaya HOM05D002011 ORTHO05D001948 3.9e-10 68.9 145 36.6
AUR62012450 Chenopodium quinoa HOM05D002011 ORTHO05D001948 3.9e-10 68.9 139 38.1
TAR636G1642 Trochodendron aralioides HOM05D002011 ORTHO05D001948 3.9e-10 68.9 140 39.3
Nn2g12257 Nelumbo nucifera HOM05D002011 ORTHO05D001948 5.1e-10 68.6 133 39.1
Sopen03g036120 Solanum pennellii HOM05D002011 ORTHO05D001948 5.1e-10 68.6 145 36.6
vmacro19034 Vaccinium macrocarpon HOM05D002011 ORTHO05D001948 5.1e-10 68.6 146 39.7
Ah.16g104840 Amaranthus hybridus HOM05D002011 ORTHO05D001948 6.6e-10 68.2 131 40.5
MSTRG.11167 Avicennia marina HOM05D002011 ORTHO05D001948 6.6e-10 68.2 135 40.0
TWI32G0803 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 6.6e-10 68.2 142 36.6
TWI34G1253 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 6.6e-10 68.2 124 41.9
Actinidia22311 Actinidia chinensis HOM05D002011 ORTHO05D001948 8.7e-10 67.8 134 41.0
Dinv03417 Davidia involucrata HOM05D002011 ORTHO05D001948 8.7e-10 67.8 128 37.5
CSS0035080 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 1.1e-09 67.4 136 38.2
Nitab4.5_0008673g0020 Nicotiana tabacum HOM05D002011 ORTHO05D001948 1.1e-09 67.4 128 41.4
Actinidia23086 Actinidia chinensis HOM05D002011 ORTHO05D001948 1.5e-09 67.0 139 40.3
AUR62031573 Chenopodium quinoa HOM05D002011 ORTHO05D001948 1.5e-09 67.0 149 36.9
COL.COLO4_18921 Corchorus olitorius HOM05D002011 ORTHO05D001948 1.9e-09 66.6 146 35.6
Phvul.009G090200 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 1.9e-09 66.6 153 36.6
SalBow7G0591 Salvia bowleyana HOM05D002011 ORTHO05D001948 1.9e-09 66.6 137 35.8
Actinidia13206 Actinidia chinensis HOM05D002011 ORTHO05D001948 2.5e-09 66.2 135 41.5
PSO017G2943 Papaver somniferum HOM05D002011 ORTHO05D001948 2.5e-09 66.2 155 37.4
PSO170G6599 Papaver somniferum HOM05D002011 ORTHO05D001948 2.5e-09 66.2 155 37.4
Atru.chr10.2381 Acer truncatum HOM05D002011 ORTHO05D001948 3.3e-09 65.9 128 35.9
CAN.G407.39 Capsicum annuum HOM05D002011 ORTHO05D001948 3.3e-09 65.9 124 42.7
Lalb_Chr08g0244281 Lupinus albus HOM05D002011 ORTHO05D001948 3.3e-09 65.9 161 36.6
TPR.G3107 Trifolium pratense HOM05D002011 ORTHO05D001948 4.3e-09 65.5 153 36.6
ClCG05G016560 Citrullus lanatus HOM05D002011 ORTHO05D001948 5.6e-09 65.1 130 40.8
Haze_16635 Corylus avellana HOM05D002011 ORTHO05D001948 5.6e-09 65.1 119 37.8
Actinidia14104 Actinidia chinensis HOM05D002011 ORTHO05D001948 7.3e-09 64.7 131 37.4
Migut.I00725 Erythranthe guttata HOM05D002011 ORTHO05D001948 7.3e-09 64.7 143 34.3
Lalb_Chr23g0268371 Lupinus albus HOM05D002011 ORTHO05D001948 1.3e-08 63.9 160 38.1
Sabra16G0198400 Salix brachista HOM05D002011 ORTHO05D001948 1.3e-08 63.9 124 39.5
vmacro11223 Vaccinium macrocarpon HOM05D002011 ORTHO05D001948 1.3e-08 63.9 130 36.2
Gohir.D07G034500 Gossypium hirsutum HOM05D002011 ORTHO05D001948 1.6e-08 63.5 130 36.2
Gorai.001G036200 Gossypium raimondii HOM05D002011 ORTHO05D001948 1.6e-08 63.5 125 36.0
Lj1g0007627 Lotus japonicus HOM05D002011 ORTHO05D001948 1.6e-08 63.5 156 35.3
Hma1.2p1_0228F.1_g096600 Hydrangea macrophylla HOM05D002011 ORTHO05D001948 2.1e-08 63.2 157 35.0
SGA_v2.0_scaffold5G02744 Striga asiatica HOM05D002011 ORTHO05D001948 2.1e-08 63.2 137 35.8
Manes.03G011400 Manihot esculenta HOM05D002011 ORTHO05D001948 2.8e-08 62.8 160 35.6
Rhsim02G0206600 Rhododendron simsii HOM05D002011 ORTHO05D001948 2.8e-08 62.8 133 38.3
Hund29456 Selenicereus undatus HOM05D002011 ORTHO05D001948 3.6e-08 62.4 147 32.7
Hund29458 Selenicereus undatus HOM05D002011 ORTHO05D001948 3.6e-08 62.4 147 32.7
Prupe.1G486600 Prunus persica HOM05D002011 ORTHO05D001948 4.8e-08 62.0 143 35.0
Rhsim08G0208500 Rhododendron simsii HOM05D002011 ORTHO05D001948 6.2e-08 61.6 122 41.0
Hund19962 Selenicereus undatus HOM05D002011 ORTHO05D001948 6.2e-08 61.6 149 36.2
vmacro16866 Vaccinium macrocarpon HOM05D002011 ORTHO05D001948 6.2e-08 61.6 124 41.9
Sed0005888 Sechium edule HOM05D002011 ORTHO05D001948 1.4e-07 60.5 138 39.1
Duzib187G1916 Durio zibethinus HOM05D002011 ORTHO05D001948 1.8e-07 60.1 146 33.6
Gohir.A07G030600 Gossypium hirsutum HOM05D002011 ORTHO05D001948 2.4e-07 59.7 123 37.4
Psat5g036760 Pisum sativum HOM05D002011 ORTHO05D001948 2.4e-07 59.7 152 34.9
SHI11259 Sapria himalayana HOM05D002011 ORTHO05D001948 2.4e-07 59.7 133 35.3
CiPaw.08G008100 Carya illinoinensis HOM05D002011 ORTHO05D001948 3.1e-07 59.3 146 39.0
CsaV3_4G036820 Cucumis sativus L. HOM05D002011 ORTHO05D001948 3.1e-07 59.3 140 37.1
ECA247G3935 Erigeron canadensis HOM05D002011 ORTHO05D001948 3.1e-07 59.3 72 45.8
THA.LOC104813311 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 3.1e-07 59.3 56 58.9
C08p44770 Brassica napus HOM05D002011 ORTHO05D001948 4.0e-07 58.9 87 42.5
HanXRQChr02g0034871 Helianthus annuus HOM05D002011 ORTHO05D001948 4.0e-07 58.9 77 48.1
HanXRQChr04g0098231 Helianthus annuus HOM05D002011 ORTHO05D001948 4.0e-07 58.9 67 50.7
Cfa013098 Carpinus fangiana HOM05D002011 ORTHO05D001948 5.3e-07 58.5 148 35.8
SGA_v2.0_scaffold37G14736 Striga asiatica HOM05D002011 ORTHO05D001948 5.3e-07 58.5 81 49.4
CSS0039956 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 6.9e-07 58.2 142 35.9
Oeu029907.1 Olea europaea HOM05D002011 ORTHO05D001948 6.9e-07 58.2 155 36.1
Actinidia18229 Actinidia chinensis HOM05D002011 ORTHO05D001948 9.0e-07 57.8 130 40.8
Psat7g258520 Pisum sativum HOM05D002011 ORTHO05D001948 9.0e-07 57.8 79 46.8
Sabra06G0202900 Salix brachista HOM05D002011 ORTHO05D001948 9.0e-07 57.8 126 36.5
BcaC07g41480 Brassica carinata HOM05D002011 ORTHO05D001948 1.2e-06 57.4 87 41.4
Duzib168G0584 Durio zibethinus HOM05D002011 ORTHO05D001948 1.2e-06 57.4 128 35.9
A09p61180 Brassica napus HOM05D002011 ORTHO05D001948 1.5e-06 57.0 87 41.4
BraA09t41492Z Brassica rapa HOM05D002011 ORTHO05D001948 1.5e-06 57.0 87 41.4
C05p14050 Brassica napus HOM05D002011 ORTHO05D001948 2.0e-06 56.6 84 44.0
BolC5t30136H Brassica oleracea HOM05D002011 ORTHO05D001948 2.0e-06 56.6 84 44.0
MELO3C016985.2 Cucumis melo HOM05D002011 ORTHO05D001948 2.0e-06 56.6 134 32.8
CsaV3_7G032000 Cucumis sativus L. HOM05D002011 ORTHO05D001948 2.0e-06 56.6 149 37.6
PGR044G0932 Punica granatum HOM05D002011 ORTHO05D001948 2.0e-06 56.6 72 52.8
BcaB03g14520 Brassica carinata HOM05D002011 ORTHO05D001948 2.6e-06 56.2 63 50.8
A06p11870 Brassica napus HOM05D002011 ORTHO05D001948 2.6e-06 56.2 84 42.9
Haze_21454 Corylus avellana HOM05D002011 ORTHO05D001948 2.6e-06 56.2 150 34.7
Sed0021865 Sechium edule HOM05D002011 ORTHO05D001948 2.6e-06 56.2 146 34.2
Glyma.07G026500 Glycine max HOM05D028899 ORTHO05D029786 3.4e-06 55.8 148 34.5
CSS0040463 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 4.5e-06 55.5 136 33.8
QL02p097021 Quercus lobata HOM05D002011 ORTHO05D001948 4.5e-06 55.5 47 68.1
Sp1g14100 Schrenkiella parvula HOM05D002011 ORTHO05D001948 4.5e-06 55.5 61 52.5
MELO3C023456.2 Cucumis melo HOM05D002011 ORTHO05D001948 5.8e-06 55.1 149 38.9
Aqoxy7G03522 Aquilegia oxysepala HOM05D002011 ORTHO05D001948 7.6e-06 54.7 134 35.1
Thhalv10008783m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 7.6e-06 54.7 60 53.3
Potri.006G259700 Populus trichocarpa HOM05D002011 ORTHO05D001948 7.6e-06 54.7 129 33.3
SalBow6G4661 Salvia bowleyana HOM05D002011 ORTHO05D001948 7.6e-06 54.7 63 50.8
Thecc.09G019200 Theobroma cacao HOM05D002011 ORTHO05D001948 7.6e-06 54.7 141 31.9
AL1G27950 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 9.9e-06 54.3 61 50.8
BraA06t24357Z Brassica rapa HOM05D002011 ORTHO05D001948 9.9e-06 54.3 84 41.7
CARHR016310 Cardamine hirsuta HOM05D002011 ORTHO05D001948 9.9e-06 54.3 65 50.8
Glyma.08G215900 Glycine max HOM05D028899 ORTHO05D029786 9.9e-06 54.3 151 29.8
THA.LOC104803640 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 9.9e-06 54.3 151 31.1


User provided reference genes

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